Recruitment of thioredoxin-like domains into prostaglandin synthases.

PubWeight™: 0.76‹?›

🔗 View Article (PMID 18307977)

Published in Biochem Biophys Res Commun on February 26, 2008

Authors

Hiromi Daiyasu1, Kikuko Watanabe, Hiroyuki Toh

Author Affiliations

1: Center for Advanced Medical Engineering and Informatics, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.

Articles by these authors

MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res (2005) 31.64

Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform (2008) 22.07

Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol (2009) 7.59

Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics (2010) 4.61

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. Bioinformatics (2006) 3.92

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics (2008) 3.55

Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell (2003) 2.11

Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization. Biochem Biophys Res Commun (2003) 2.09

Improvement in the accuracy of multiple sequence alignment program MAFFT. Genome Inform (2005) 1.83

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics (2005) 1.75

ASH structure alignment package: sensitivity and selectivity in domain classification. BMC Bioinformatics (2007) 1.73

GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinformatics (2005) 1.71

Cellular prostaglandin E2 production by membrane-bound prostaglandin E synthase-2 via both cyclooxygenases-1 and -2. J Biol Chem (2003) 1.69

Detecting local structural similarity in proteins by maximizing number of equivalent residues. Proteins (2004) 1.61

Identification and characterization of a novel type of membrane-associated prostaglandin E synthase. Biochem Biophys Res Commun (2002) 1.52

Loss of FBXW7, a cell cycle regulating gene, in colorectal cancer: clinical significance. Int J Cancer (2010) 1.49

A novel representation of protein sequences for prediction of subcellular location using support vector machines. Protein Sci (2005) 1.38

Identification of cryptochrome DASH from vertebrates. Genes Cells (2004) 1.36

DROP: an SVM domain linker predictor trained with optimal features selected by random forest. Bioinformatics (2010) 1.31

Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis. Cancer Res (2013) 1.29

Identification of rDNA-specific non-LTR retrotransposons in Cnidaria. Mol Biol Evol (2006) 1.25

ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res (2005) 1.25

Notch-Hes1 pathway is required for the development of IL-17-producing γδ T cells. Blood (2011) 1.14

Synthesis of prostaglandin F ethanolamide by prostaglandin F synthase and identification of Bimatoprost as a potent inhibitor of the enzyme: new enzyme assay method using LC/ESI/MS. Arch Biochem Biophys (2004) 1.09

Crystal structure of human prostaglandin F synthase (AKR1C3). Biochemistry (2004) 1.07

Mast cell maturation is driven via a group III phospholipase A2-prostaglandin D2-DP1 receptor paracrine axis. Nat Immunol (2013) 1.06

Protective role of the leukotriene B4 receptor BLT2 in murine inflammatory colitis. FASEB J (2010) 1.04

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics (2006) 1.03

Loop-length-dependent SVM prediction of domain linkers for high-throughput structural proteomics. Biopolymers (2009) 0.98

Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng (2002) 0.97

Crystal structure and possible catalytic mechanism of microsomal prostaglandin E synthase type 2 (mPGES-2). J Mol Biol (2005) 0.97

ASIAN: a website for network inference. Bioinformatics (2004) 0.95

Coordinate regulation of prostaglandin metabolism for induction of parturition in mice. Endocrinology (2002) 0.94

Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network. J Mol Biol (2009) 0.94

Prostaglandin F2alpha formation from prostaglandin H2 by prostaglandin F synthase (PGFS): crystal structure of PGFS containing bimatoprost. Biochemistry (2006) 0.93

Membrane interactive alpha-helices in GPCRs as a novel drug target. Curr Protein Pept Sci (2006) 0.92

VCIP135 deubiquitinase and its binding protein, WAC, in p97ATPase-mediated membrane fusion. EMBO J (2011) 0.92

A comparative study of conservation and variation scores. BMC Bioinformatics (2010) 0.91

SeSAW: balancing sequence and structural information in protein functional mapping. Bioinformatics (2010) 0.90

Molecular characterization of a novel type of prostamide/prostaglandin F synthase, belonging to the thioredoxin-like superfamily. J Biol Chem (2007) 0.90

The rs6983267 SNP is associated with MYC transcription efficiency, which promotes progression and worsens prognosis of colorectal cancer. Ann Surg Oncol (2012) 0.90

A study of archaeal enzymes involved in polar lipid synthesis linking amino acid sequence information, genomic contexts and lipid composition. Archaea (2005) 0.90

Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan. Proteins (2008) 0.87

Prostaglandin E2 induces hypertrophic changes and suppresses alpha-skeletal actin gene expression in rat cardiomyocytes. J Cardiovasc Pharmacol (2007) 0.87

Copy number loss of FBXW7 is related to gene expression and poor prognosis in esophageal squamous cell carcinoma. Int J Oncol (2012) 0.87

Regulation of prostaglandin biosynthesis by interleukin-1 in cultured bovine endometrial cells. J Endocrinol (2008) 0.87

GRIP: a server for predicting interfaces for GPCR oligomerization. J Recept Signal Transduct Res (2009) 0.85

Membrane-associated prostaglandin E synthase-1 is required for neuropathic pain. Neuroreport (2004) 0.84

Evolutionary Analysis of Functional Divergence among Chemokine Receptors, Decoy Receptors, and Viral Receptors. Front Microbiol (2012) 0.83

Prediction of interfaces for oligomerizations of G-protein coupled receptors. Proteins (2005) 0.82

Localization of cyclooxygenases-1 and -2, and prostaglandin F synthase in human kidney and renal cell carcinoma. Biochem Biophys Res Commun (2005) 0.82

Two pathways for prostaglandin F2 alpha synthesis by the primate periovulatory follicle. Reproduction (2008) 0.82

Preferential localization of prostamide/prostaglandin F synthase in myelin sheaths of the central nervous system. Brain Res (2010) 0.81

Relative von Neumann entropy for evaluating amino acid conservation. J Bioinform Comput Biol (2010) 0.80

Positive selection in the ComC-ComD system of Streptococcal Species. J Bacteriol (2006) 0.80

Molecular cloning and spatiotemporal expression of prostaglandin F synthase and microsomal prostaglandin E synthase-1 in porcine endometrium. Endocrinology (2005) 0.79

Gtr1p differentially associates with Gtr2p and Ego1p. Gene (2009) 0.79

Functional region prediction with a set of appropriate homologous sequences--an index for sequence selection by integrating structure and sequence information with spatial statistics. BMC Struct Biol (2012) 0.79

Overexpression of SUGT1 in human colorectal cancer and its clinicopathological significance. Int J Oncol (2010) 0.78

A comprehensive immunohistochemistry of prostaglandins F2α and E2 synthetic enzymes in rat ovary and uterus around parturition. Prostaglandins Other Lipid Mediat (2013) 0.77

Genomics and computational science for virus research. Front Microbiol (2013) 0.77

Computational and experimental analyses of furcatin hydrolase for substrate specificity studies of disaccharide-specific glycosidases. J Biochem (2008) 0.77

FANCD2 mRNA overexpression is a bona fide indicator of lymph node metastasis in human colorectal cancer. Ann Surg Oncol (2010) 0.77

Expression of key prostaglandin synthases in equine endometrium during late diestrus and early pregnancy. Biol Reprod (2003) 0.77

Increased risk for CRC in diabetic patients with the nonrisk allele of SNPs at 8q24. Ann Surg Oncol (2012) 0.76

Two novel genes expressed in Xenopus germ line: characteristic features of putative protein structures, their gene expression profiles and their possible roles in gametogenesis and embryogenesis. Mol Reprod Dev (2002) 0.76

How does a topological inversion change the evolutionary constraints on membrane proteins? Protein Eng Des Sel (2004) 0.76

GRIPDB - G protein coupled Receptor Interaction Partners DataBase. J Recept Signal Transduct Res (2011) 0.76

[Interface prediction for class A GPCR oligomers]. Tanpakushitsu Kakusan Koso (2005) 0.75

[Bioinformatics]. Nihon Yakurigaku Zasshi (2005) 0.75

Functional expression of single-chain antibody to leukotriene C(4). Biochem Biophys Res Commun (2010) 0.75

[Interface re-engineering as an evolutionary mechanism of protein function]. Tanpakushitsu Kakusan Koso (2002) 0.75

[Structural bioinformatics]. Tanpakushitsu Kakusan Koso (2009) 0.75

Accumulation of S-2-hydroxyethyl derivatives of L-cysteine and L-homocysteine by a methionine auxotroph of Escherichia coli with the addition of 2-mercaptoethanol to the culture. J Biosci Bioeng (2004) 0.75

A novel type of membrane-associated prostaglandin E synthase. Adv Exp Med Biol (2003) 0.75

[Extraction of information about protein interaction using evolutionary trace]. Tanpakushitsu Kakusan Koso (2002) 0.75

cDNA cloning and mutagenesis study of liver-type prostaglandin F synthase, and identification of the prostaglandin F producing cells in the liver. Adv Exp Med Biol (2002) 0.75