Published in Genes Cells on May 01, 2004
Cryptochromes and neuronal-activity markers colocalize in the retina of migratory birds during magnetic orientation. Proc Natl Acad Sci U S A (2004) 2.13
A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity. Proc Natl Acad Sci U S A (2006) 1.75
Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honey bee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock. Genome Res (2006) 1.68
Cryptochromes--a potential magnetoreceptor: what do we know and what do we want to know? J R Soc Interface (2009) 1.42
A glimpse into the basis of vision in the kingdom Mycota. Fungal Genet Biol (2010) 1.32
Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome. Proc Natl Acad Sci U S A (2008) 1.24
Direct observation of a photoinduced radical pair in a cryptochrome blue-light photoreceptor. Angew Chem Int Ed Engl (2009) 1.24
More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development. Mol Biol Cell (2008) 1.20
Common pathways in circadian and cell cycle clocks: light-dependent activation of Fos/AP-1 in zebrafish controls CRY-1a and WEE-1. Proc Natl Acad Sci U S A (2005) 1.16
Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity. Proc Natl Acad Sci U S A (2006) 1.15
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep (2009) 1.15
Light-dependent magnetic compass orientation in amphibians and insects: candidate receptors and candidate molecular mechanisms. J R Soc Interface (2010) 1.08
Role of the white collar 1 photoreceptor in carotenogenesis, UV resistance, hydrophobicity, and virulence of Fusarium oxysporum. Eukaryot Cell (2008) 1.06
Trichoderma atroviride PHR1, a fungal photolyase responsible for DNA repair, autoregulates its own photoinduction. Eukaryot Cell (2007) 1.00
Genetic and molecular characterization of a cryptochrome from the filamentous fungus Neurospora crassa. Eukaryot Cell (2010) 0.99
Variable electron transfer pathways in an amphibian cryptochrome: tryptophan versus tyrosine-based radical pairs. J Biol Chem (2013) 0.92
Origin of light-induced spin-correlated radical pairs in cryptochrome. J Phys Chem B (2010) 0.89
DNA repair by reversal of DNA damage. Cold Spring Harb Perspect Biol (2013) 0.88
Plant photoreceptors: phylogenetic overview. J Mol Evol (2005) 0.84
Crystallization and preliminary X-ray analysis of cryptochrome 3 from Arabidopsis thaliana. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.83
Key dynamics of conserved asparagine in a cryptochrome/photolyase family protein by fourier transform infrared spectroscopy. Biochemistry (2010) 0.83
A novel cryptochrome-dependent oscillator in Neurospora crassa. Genetics (2014) 0.82
Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue. Biophys J (2007) 0.80
Fungal cryptochrome with DNA repair activity reveals an early stage in cryptochrome evolution. Proc Natl Acad Sci U S A (2015) 0.77
Photoreduction of the folate cofactor in members of the photolyase family. J Biol Chem (2009) 0.77
dbCRY: a Web-based comparative and evolutionary genomics platform for blue-light receptors. Database (Oxford) (2014) 0.77
Myb transcription factors and light regulate sporulation in the oomycete Phytophthora infestans. PLoS One (2014) 0.76
Eumetazoan cryptochrome phylogeny and evolution. Genome Biol Evol (2015) 0.76
The Trichoderma reesei Cry1 protein is a member of the cryptochrome/photolyase family with 6-4 photoproduct repair activity. PLoS One (2014) 0.75
Photolyase: Dynamics and Mechanisms of Repair of Sun-Induced DNA Damage. Photochem Photobiol (2016) 0.75
Investigation of real-time photorepair activity on DNA via surface plasmon resonance. PLoS One (2012) 0.75
Photolyase: Dynamics and electron-transfer mechanisms of DNA repair. Arch Biochem Biophys (2017) 0.75
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res (2002) 47.62
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res (2005) 31.64
Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform (2008) 22.07
Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol (2009) 7.59
Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics (2010) 4.61
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. Bioinformatics (2006) 3.92
UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex. Cell (2005) 3.85
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics (2008) 3.55
Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. J Biol Chem (2003) 2.66
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell (2008) 2.47
Preferential cis-syn thymine dimer bypass by DNA polymerase eta occurs with biased fidelity. Nature (2004) 2.40
Salt-sensitive hypertension in circadian clock-deficient Cry-null mice involves dysregulated adrenal Hsd3b6. Nat Med (2009) 2.30
The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair. DNA Repair (Amst) (2007) 2.26
Human villous trophoblasts express and secrete placenta-specific microRNAs into maternal circulation via exosomes. Biol Reprod (2009) 2.17
The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation. Cell (2011) 2.16
Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Mol Cell (2006) 2.13
Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell (2003) 2.11
Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization. Biochem Biophys Res Commun (2003) 2.09
High-efficiency bypass of DNA damage by human DNA polymerase Q. EMBO J (2004) 2.07
The cryptochromes. Genome Biol (2005) 2.02
Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity. Mol Cell Biol (2004) 1.85
Improvement in the accuracy of multiple sequence alignment program MAFFT. Genome Inform (2005) 1.83
Infrared laser-mediated gene induction in targeted single cells in vivo. Nat Methods (2008) 1.78
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics (2005) 1.75
Involvement of urinary bladder Connexin43 and the circadian clock in coordination of diurnal micturition rhythm. Nat Commun (2012) 1.74
ASH structure alignment package: sensitivity and selectivity in domain classification. BMC Bioinformatics (2007) 1.73
GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinformatics (2005) 1.71
Translesion synthesis by human DNA polymerase eta across thymine glycol lesions. Biochemistry (2002) 1.71
Cryptochrome is present in the compound eyes and a subset of Drosophila's clock neurons. J Comp Neurol (2008) 1.67
A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes. Mech Dev (2004) 1.65
Detecting local structural similarity in proteins by maximizing number of equivalent residues. Proteins (2004) 1.61
Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease. Structure (2007) 1.59
Centrin 2 stimulates nucleotide excision repair by interacting with xeroderma pigmentosum group C protein. Mol Cell Biol (2005) 1.58
Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions. J Biol Chem (2004) 1.53
Role of Gln1029 in the photoactivation processes of the LOV2 domain in adiantum phytochrome3. Biochemistry (2004) 1.53
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair (Amst) (2002) 1.53
Human DNA polymerase N (POLN) is a low fidelity enzyme capable of error-free bypass of 5S-thymine glycol. J Biol Chem (2006) 1.49
Loss of FBXW7, a cell cycle regulating gene, in colorectal cancer: clinical significance. Int J Cancer (2010) 1.49
Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro. Genes Cells (2003) 1.48
MicroRNA (miRNA) cloning analysis reveals sex differences in miRNA expression profiles between adult mouse testis and ovary. Reproduction (2008) 1.44
DDB1-DDB2 (xeroderma pigmentosum group E) protein complex recognizes a cyclobutane pyrimidine dimer, mismatches, apurinic/apyrimidinic sites, and compound lesions in DNA. J Biol Chem (2005) 1.38
A novel representation of protein sequences for prediction of subcellular location using support vector machines. Protein Sci (2005) 1.38
Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning. Mol Cell (2009) 1.37
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Serine phosphorylation of mCRY1 and mCRY2 by mitogen-activated protein kinase. Genes Cells (2004) 1.34
Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution. Nat Biotechnol (2004) 1.34
DROP: an SVM domain linker predictor trained with optimal features selected by random forest. Bioinformatics (2010) 1.31
Generation of medaka gene knockout models by target-selected mutagenesis. Genome Biol (2006) 1.30
An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress. J Biol Chem (2003) 1.30
Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis. Cancer Res (2013) 1.29
The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay. Biochemistry (2002) 1.26
Identification of rDNA-specific non-LTR retrotransposons in Cnidaria. Mol Biol Evol (2006) 1.25
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res (2005) 1.25
Reduced alpha-adrenoceptor responsiveness and enhanced baroreflex sensitivity in Cry-deficient mice lacking a biological clock. J Physiol (2005) 1.22
Hydroxysteroid (17-β) dehydrogenase 1 is dysregulated by miR-210 and miR-518c that are aberrantly expressed in preeclamptic placentas: a novel marker for predicting preeclampsia. Hypertension (2011) 1.19
REV1 restrains DNA polymerase zeta to ensure frame fidelity during translesion synthesis of UV photoproducts in vivo. Nucleic Acids Res (2008) 1.15
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep (2009) 1.15
The activity of bisphenol A depends on both the estrogen receptor subtype and the cell type. Endocr J (2002) 1.15
Notch-Hes1 pathway is required for the development of IL-17-producing γδ T cells. Blood (2011) 1.14
Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair. Nucleic Acids Res (2003) 1.14
Zebrafish CRY represses transcription mediated by CLOCK-BMAL heterodimer without inhibiting its binding to DNA. Genes Cells (2002) 1.14
Evolutionary history and functional implications of protein domains and their combinations in eukaryotes. Genome Biol (2007) 1.09
Circadian and circalunar clock interactions in a marine annelid. Cell Rep (2013) 1.08
In vivo destabilization and functional defects of the xeroderma pigmentosum C protein caused by a pathogenic missense mutation. Mol Cell Biol (2007) 1.06
Simultaneous disruption of two DNA polymerases, Polη and Polζ, in Avian DT40 cells unmasks the role of Polη in cellular response to various DNA lesions. PLoS Genet (2010) 1.06
Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase. EMBO J (2003) 1.05
A role for DNA polymerase beta in mutagenic UV lesion bypass. J Biol Chem (2002) 1.04
Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase. J Biol Chem (2006) 1.04
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes. Plant Cell Environ (2010) 1.04
Protective role of the leukotriene B4 receptor BLT2 in murine inflammatory colitis. FASEB J (2010) 1.04
Functional and structural analyses of cryptochrome. Vertebrate CRY regions responsible for interaction with the CLOCK:BMAL1 heterodimer and its nuclear localization. J Biol Chem (2003) 1.03
Photoreaction cycle of the light, oxygen, and voltage domain in FKF1 determined by low-temperature absorption spectroscopy. Biochemistry (2006) 1.03
Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase iota. DNA Repair (Amst) (2003) 1.03
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics (2006) 1.03
Roles of the polymerase and BRCT domains of Rev1 protein in translesion DNA synthesis in yeast in vivo. Mutat Res (2005) 1.03
A molecular basis for the selective recognition of 2-hydroxy-dATP and 8-oxo-dGTP by human MTH1. J Biol Chem (2001) 1.02
Photoactivation of the flavin cofactor in Xenopus laevis (6 - 4) photolyase: observation of a transient tyrosyl radical by time-resolved electron paramagnetic resonance. Proc Natl Acad Sci U S A (2002) 1.01
Dmrt1 mutation causes a male-to-female sex reversal after the sex determination by Dmy in the medaka. Chromosome Res (2012) 1.01
Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates. J Biol Chem (2004) 1.01
High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library. BMC Mol Biol (2010) 1.00
Circadian intraocular pressure rhythm is generated by clock genes. Invest Ophthalmol Vis Sci (2006) 0.99
Blockage of RNA polymerase II at a cyclobutane pyrimidine dimer and 6-4 photoproduct. Biochem Biophys Res Commun (2004) 0.99
DNA binding properties of human DNA polymerase eta: implications for fidelity and polymerase switching of translesion synthesis. Genes Cells (2004) 0.99
Loop-length-dependent SVM prediction of domain linkers for high-throughput structural proteomics. Biopolymers (2009) 0.98
Human papillomavirus and p53 mutations in head and neck squamous cell carcinoma among Japanese population. Cancer Sci (2014) 0.98
Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng (2002) 0.97
TEX101 is shed from the surface of sperm located in the caput epididymidis of the mouse. Zygote (2005) 0.97
Infrared laser-mediated local gene induction in medaka, zebrafish and Arabidopsis thaliana. Dev Growth Differ (2009) 0.96
ASIAN: a website for network inference. Bioinformatics (2004) 0.95
Lesion bypass by S. cerevisiae Pol ζ alone. DNA Repair (Amst) (2011) 0.95
Quantitative analysis of isolated and clustered DNA damage induced by gamma-rays, carbon ion beams, and iron ion beams. J Radiat Res (2008) 0.94