PubRank

Claude W dePamphilis

Author PubWeight™ 70.12‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Ancestral polyploidy in seed plants and angiosperms. Nature 2011 7.00
2 The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 2008 5.54
3 Widespread genome duplications throughout the history of flowering plants. Genome Res 2006 4.07
4 Methods for obtaining and analyzing whole chloroplast genome sequences. Methods Enzymol 2005 2.86
5 The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol 2011 2.68
6 Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics 2009 2.60
7 Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol 2010 2.50
8 The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 2002 2.36
9 Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol 2005 2.18
10 The evolution of parasitism in plants. Trends Plant Sci 2010 2.16
11 PlantTribes: a gene and gene family resource for comparative genomics in plants. Nucleic Acids Res 2007 1.65
12 Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol 2013 1.59
13 Conservation and divergence in the AGAMOUS subfamily of MADS-box genes: evidence of independent sub- and neofunctionalization events. Evol Dev 2006 1.57
14 EST clustering error evaluation and correction. Bioinformatics 2004 1.54
15 Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science 2013 1.48
16 Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol 2006 1.46
17 De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. BMC Genomics 2011 1.45
18 Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. Plant J 2007 1.44
19 ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Res 2006 1.39
20 Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. BMC Bioinformatics 2005 1.35
21 The impact of multiple protein sequence alignment on phylogenetic estimation. IEEE/ACM Trans Comput Biol Bioinform 2011 1.31
22 Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science 2013 1.31
23 Missing links: the genetic architecture of flowers [correction of flower] and floral diversification. Trends Plant Sci 2002 1.29
24 Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol 2003 1.24
25 Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications. Mol Biol Evol 2003 1.08
26 Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis. Curr Biol 2011 1.08
27 Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). Am J Bot 2012 1.08
28 EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot. Plant Mol Biol 2006 1.07
29 Parallel loss of plastid introns and their maturase in the genus Cuscuta. PLoS One 2009 1.02
30 Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. BMC Evol Biol 2006 0.98
31 Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages. PLoS One 2013 0.95
32 The Amborella genome: an evolutionary reference for plant biology. Genome Biol 2008 0.95
33 Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proc Natl Acad Sci U S A 2010 0.94
34 A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol 2011 0.93
35 Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function. BMC Evol Biol 2005 0.92
36 Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae. Mol Biol Evol 2013 0.92
37 Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. BMC Genomics 2008 0.88
38 Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression. BMC Plant Biol 2013 0.88
39 Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. J Integr Plant Biol 2008 0.84
40 The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiol 2011 0.83
41 Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls. BMC Plant Biol 2014 0.83
42 Chasing the hare - evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae). BMC Evol Biol 2011 0.83
43 Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1. J Exp Bot 2011 0.80
44 Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies. BMC Plant Biol 2013 0.78