Published in Bioinformatics on June 09, 2004
Widespread genome duplications throughout the history of flowering plants. Genome Res (2006) 4.07
Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics (2009) 2.60
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. BMC Bioinformatics (2008) 2.17
Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics (2007) 1.77
Transcriptomics of the bed bug (Cimex lectularius). PLoS One (2011) 1.76
Consistent annotation of gene expression arrays. BMC Genomics (2010) 1.62
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. BMC Bioinformatics (2005) 1.35
Transcriptomics of a giant freshwater prawn (Macrobrachium rosenbergii): de novo assembly, annotation and marker discovery. PLoS One (2011) 1.30
Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol (2007) 1.16
High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. PLoS One (2012) 1.08
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiol (2005) 0.98
A Bayesian nonparametric method for prediction in EST analysis. BMC Bioinformatics (2007) 0.96
Transcriptome analysis of the Portunus trituberculatus: de novo assembly, growth-related gene identification and marker discovery. PLoS One (2014) 0.94
A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica. Plant Physiol (2010) 0.92
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. BMC Bioinformatics (2009) 0.92
Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies. Genome Biol (2010) 0.92
Orthology, function and evolution of accessory gland proteins in the Drosophila repleta group. Genetics (2008) 0.90
Role of conserved non-coding regulatory elements in LMW glutenin gene expression. PLoS One (2011) 0.86
Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. PLoS One (2016) 0.84
Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids. PLoS One (2013) 0.84
Transcriptomics and identification of the chemoreceptor superfamily of the pupal parasitoid of the oriental fruit fly, Spalangia endius Walker (Hymenoptera: Pteromalidae). PLoS One (2014) 0.83
XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics (2005) 0.81
PEACE: Parallel Environment for Assembly and Clustering of Gene Expression. Nucleic Acids Res (2010) 0.80
A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers. BMC Plant Biol (2008) 0.80
Quantitative gene expression profiles in real time from expressed sequence tag databases. Gene Expr (2010) 0.79
Analysis of genome survey sequences and SSR marker development for Siamese Mud Carp, Henicorhynchus siamensis, using 454 pyrosequencing. Int J Mol Sci (2012) 0.78
The use of EST expression matrixes for the quality control of gene expression data. PLoS One (2012) 0.78
De novo transcriptome sequencing analysis and comparison of differentially expressed genes (DEGs) in Macrobrachium rosenbergii in China. PLoS One (2014) 0.78
De novo RNA-Seq analysis of the venus clam, Cyclina sinensis, and the identification of immune-related genes. PLoS One (2015) 0.76
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut. PLoS One (2017) 0.75
Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology. BMC Genomics (2016) 0.75
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads. BMC Bioinformatics (2014) 0.75
k-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage. Bioinformatics (2009) 0.75
Transcriptome Analysis for Identification of Genes Related to Gonad Differentiation, Growth, Immune Response and Marker Discovery in The Turbot (Scophthalmus maximus). PLoS One (2016) 0.75
Transcriptome analysis of sika deer in China. Mol Genet Genomics (2016) 0.75
Clopidogrel with aspirin in acute minor stroke or transient ischemic attack. N Engl J Med (2013) 8.76
Ancestral polyploidy in seed plants and angiosperms. Nature (2011) 7.00
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature (2008) 5.54
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci U S A (2007) 4.47
The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Front Plant Sci (2011) 4.16
Widespread genome duplications throughout the history of flowering plants. Genome Res (2006) 4.07
Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function. Proc Natl Acad Sci U S A (2008) 3.08
Methods for obtaining and analyzing whole chloroplast genome sequences. Methods Enzymol (2005) 2.86
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol (2011) 2.68
Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics (2009) 2.60
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS (2006) 2.57
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol (2010) 2.50
The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell (2002) 2.36
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Mol Biol Evol (2005) 2.23
Endocytic trafficking routes of wild type and DeltaF508 cystic fibrosis transmembrane conductance regulator. Mol Biol Cell (2004) 2.21
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol (2005) 2.18
The evolution of parasitism in plants. Trends Plant Sci (2010) 2.16
The China National Stroke Registry for patients with acute cerebrovascular events: design, rationale, and baseline patient characteristics. Int J Stroke (2011) 1.90
F508del CFTR with two altered RXR motifs escapes from ER quality control but its channel activity is thermally sensitive. Biochim Biophys Acta (2006) 1.87
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One (2012) 1.82
PlantTribes: a gene and gene family resource for comparative genomics in plants. Nucleic Acids Res (2007) 1.65
Multiple membrane-cytoplasmic domain contacts in the cystic fibrosis transmembrane conductance regulator (CFTR) mediate regulation of channel gating. J Biol Chem (2008) 1.62
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol (2013) 1.59
Conservation and divergence in the AGAMOUS subfamily of MADS-box genes: evidence of independent sub- and neofunctionalization events. Evol Dev (2006) 1.57
Phylogeny and domain evolution in the APETALA2-like gene family. Mol Biol Evol (2005) 1.55
Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science (2013) 1.48
Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol (2006) 1.46
De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. BMC Genomics (2011) 1.45
Association of interleukin-1 gene cluster polymorphisms with ischemic stroke in a Chinese population. Neurol India (2006) 1.45
Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. Plant J (2007) 1.44
F-wave latencies in patients with diabetes mellitus. Muscle Nerve (2014) 1.42
ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Res (2006) 1.39
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. BMC Bioinformatics (2005) 1.35
The impact of multiple protein sequence alignment on phylogenetic estimation. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.31
Regulatory insertion removal restores maturation, stability and function of DeltaF508 CFTR. J Mol Biol (2010) 1.31
Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (2013) 1.31
Missing links: the genetic architecture of flowers [correction of flower] and floral diversification. Trends Plant Sci (2002) 1.29
Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J (2007) 1.28
The PDZ-binding chloride channel ClC-3B localizes to the Golgi and associates with cystic fibrosis transmembrane conductance regulator-interacting PDZ proteins. J Biol Chem (2002) 1.28
Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol (2003) 1.24
Restoration of domain folding and interdomain assembly by second-site suppressors of the DeltaF508 mutation in CFTR. FASEB J (2010) 1.18
Allosteric modulation balances thermodynamic stability and restores function of ΔF508 CFTR. J Mol Biol (2012) 1.18
Correctors of ΔF508 CFTR restore global conformational maturation without thermally stabilizing the mutant protein. FASEB J (2012) 1.17
Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification. Proc Biol Sci (2008) 1.10
Role of N-linked oligosaccharides in the biosynthetic processing of the cystic fibrosis membrane conductance regulator. J Cell Sci (2008) 1.10
Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae. Am J Bot (2012) 1.09
Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications. Mol Biol Evol (2003) 1.08
Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). Am J Bot (2012) 1.08
Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis. Curr Biol (2011) 1.08
Orchid phylogenomics and multiple drivers of their extraordinary diversification. Proc Biol Sci (2015) 1.07
EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot. Plant Mol Biol (2006) 1.07
Relationship between nucleotide binding and ion channel gating in cystic fibrosis transmembrane conductance regulator. J Physiol (2009) 1.06
Parallel loss of plastid introns and their maturase in the genus Cuscuta. PLoS One (2009) 1.02
Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome. J Bioinform Comput Biol (2009) 1.00
Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. BMC Evol Biol (2006) 0.98
Fabrication of silicon/polymer composite nanopost arrays and their sensing applications. Small (2011) 0.96
ATP binding to the first nucleotide-binding domain of multidrug resistance protein MRP1 increases binding and hydrolysis of ATP and trapping of ADP at the second domain. J Biol Chem (2001) 0.95
Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages. PLoS One (2013) 0.95
The Amborella genome: an evolutionary reference for plant biology. Genome Biol (2008) 0.95
Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proc Natl Acad Sci U S A (2010) 0.94
Geographic isolation trumps coevolution as a driver of yucca and yucca moth diversification. Mol Phylogenet Evol (2011) 0.93
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol (2011) 0.93
Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function. BMC Evol Biol (2005) 0.92
Role of individual R domain phosphorylation sites in CFTR regulation by protein kinase A. Biochim Biophys Acta (2009) 0.92
Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae. Mol Biol Evol (2013) 0.92
The phylogeny of yuccas. Mol Phylogenet Evol (2006) 0.91
The plasmid genome database. Microbiology (2003) 0.91
Patterns of speciation in the Yucca moths: parallel species radiations within the Tegeticula yuccasella species complex. Syst Biol (2006) 0.89
Comparative genomic analyses in Asparagus. Genome (2005) 0.89
Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. BMC Genomics (2008) 0.88
Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression. BMC Plant Biol (2013) 0.88
Implementation of a structured guideline-based program for the secondary prevention of ischemic stroke in China. Stroke (2014) 0.88
Efficacy of pregabalin for peripheral neuropathic pain: results of an 8-week, flexible-dose, double-blind, placebo-controlled study conducted in China. Clin Ther (2011) 0.87
SOD1 aggregation in astrocytes following ischemia/reperfusion injury: a role of NO-mediated S-nitrosylation of protein disulfide isomerase (PDI). J Neuroinflammation (2012) 0.87
Bcr (breakpoint cluster region) protein binds to PDZ-domains of scaffold protein PDZK1 and vesicle coat protein Mint3. J Cell Sci (2004) 0.86
DL-3-n-butylphthalide extends survival by attenuating glial activation in a mouse model of amyotrophic lateral sclerosis. Neuropharmacology (2011) 0.86
Oxidative modification of cysteine 111 promotes disulfide bond-independent aggregation of SOD1. Neurochem Res (2012) 0.85
Standard medical management in secondary prevention of ischemic stroke in China (SMART). Int J Stroke (2011) 0.84
Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. J Integr Plant Biol (2008) 0.84
Chasing the hare - evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae). BMC Evol Biol (2011) 0.83
The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiol (2011) 0.83
Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls. BMC Plant Biol (2014) 0.83
Morvan syndrome plus thyroid dysfunction: a case with chronic mercury exposure. Neurol India (2014) 0.82
Color-oscillating photonic crystal hydrogel. Macromol Rapid Commun (2009) 0.82
S-nitrosylated protein disulfide isomerase contributes to mutant SOD1 aggregates in amyotrophic lateral sclerosis. J Neurochem (2012) 0.81
Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1. J Exp Bot (2011) 0.80