Published in Appl Environ Microbiol on March 31, 2008
Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases. Appl Environ Microbiol (2011) 1.81
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii. Appl Environ Microbiol (2010) 1.54
Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius. Front Microbiol (2012) 1.32
Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Appl Environ Microbiol (2009) 1.16
Archaeal intrinsic transcription termination in vivo. J Bacteriol (2009) 1.15
Shuttle vector-based transformation system for Pyrococcus furiosus. Appl Environ Microbiol (2010) 1.13
Distinct physiological roles of the three [NiFe]-hydrogenase orthologs in the hyperthermophilic archaeon Thermococcus kodakarensis. J Bacteriol (2011) 1.08
Genetics Techniques for Thermococcus kodakarensis. Front Microbiol (2012) 1.06
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res (2010) 1.04
Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive. Mol Microbiol (2008) 1.02
Deletion of alternative pathways for reductant recycling in Thermococcus kodakarensis increases hydrogen production. Mol Microbiol (2011) 1.00
Genetic tool development underpins recent advances in thermophilic whole-cell biocatalysts. Microb Biotechnol (2011) 0.97
A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus. Appl Environ Microbiol (2012) 0.96
Physiological characteristics of the extreme thermophile Caldicellulosiruptor saccharolyticus: an efficient hydrogen cell factory. Microb Cell Fact (2010) 0.96
Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis. RNA Biol (2013) 0.96
Thermococcus kodakarensis mutants deficient in di-myo-inositol phosphate use aspartate to cope with heat stress. J Bacteriol (2010) 0.96
Defining components of the chromosomal origin of replication of the hyperthermophilic archaeon Pyrococcus furiosus needed for construction of a stable replicating shuttle vector. Appl Environ Microbiol (2011) 0.94
Overview of the genetic tools in the Archaea. Front Microbiol (2012) 0.93
How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions. Extremophiles (2013) 0.90
Genetic examination of initial amino acid oxidation and glutamate catabolism in the hyperthermophilic archaeon Thermococcus kodakarensis. J Bacteriol (2013) 0.88
Characterization of NADH oxidase/NADPH polysulfide oxidoreductase and its unexpected participation in oxygen sensitivity in an anaerobic hyperthermophilic archaeon. J Bacteriol (2010) 0.84
Genetic manipulations of the hyperthermophilic piezophilic archaeon Thermococcus barophilus. Appl Environ Microbiol (2014) 0.83
Association of a multi-synthetase complex with translating ribosomes in the archaeon Thermococcus kodakarensis. FEBS Lett (2012) 0.83
An archaeal histone is required for transformation of Thermococcus kodakarensis. J Bacteriol (2012) 0.83
Genetic analyses of the functions of [NiFe]-hydrogenase maturation endopeptidases in the hyperthermophilic archaeon Thermococcus kodakarensis. Extremophiles (2016) 0.81
Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1. Appl Environ Microbiol (2013) 0.81
Biochemical characterization of pantoate kinase, a novel enzyme necessary for coenzyme A biosynthesis in the Archaea. J Bacteriol (2012) 0.80
Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation. J Biol Chem (2010) 0.80
Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles. Genome Announc (2014) 0.78
Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes. J Mol Evol (2015) 0.76
Analyses of in vivo interactions between transcription factors and the archaeal RNA polymerase. Methods (2015) 0.75
Mechanisms of gene flow in archaea. Nat Rev Microbiol (2017) 0.75
Flipping chromosomes in deep-sea archaea. PLoS Genet (2017) 0.75
Engineering of a hyperthermophilic archaeon, Thermococcus kodakarensis, that displays chitin-dependent hydrogen production. Appl Environ Microbiol (2017) 0.75
An in vitro enzyme system for the production of myo-inositol from starch. Appl Environ Microbiol (2017) 0.75
Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res (2005) 3.68
Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes. J Bacteriol (2005) 3.04
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes. Nucleic Acids Res (2007) 2.93
Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol (2003) 2.85
Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea (2004) 2.41
Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl Environ Microbiol (2005) 2.12
Archaeal type III RuBisCOs function in a pathway for AMP metabolism. Science (2007) 1.99
Divergent transcriptional and translational signals in Archaea. Environ Microbiol (2005) 1.76
Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea. PLoS Genet (2007) 1.63
Genetic evidence identifying the true gluconeogenic fructose-1,6-bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles. J Bacteriol (2004) 1.56
Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance. J Bacteriol (2007) 1.54
Evolution of translational initiation: new insights from the archaea. FEMS Microbiol Rev (2005) 1.49
Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile. J Bacteriol (1996) 1.41
TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. J Mol Biol (2006) 1.36
Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation. Mol Microbiol (2003) 1.32
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis. J Bacteriol (2006) 1.31
Cis-acting signals controlling translational initiation in the thermophilic archaeon Sulfolobus solfataricus. Mol Microbiol (1999) 1.30
Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi. Appl Environ Microbiol (2002) 1.26
Functional molecular mapping of archaeal translation initiation factor 2. J Biol Chem (2004) 1.24
A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. J Biol Chem (2007) 1.22
The first archaeal ATP-dependent glucokinase, from the hyperthermophilic crenarchaeon Aeropyrum pernix, represents a monomeric, extremely thermophilic ROK glucokinase with broad hexose specificity. J Bacteriol (2002) 1.21
In vivo studies on putative Shine-Dalgarno sequences of the halophilic archaeon Halobacterium salinarum. Mol Microbiol (2004) 1.15
Polarity in archaeal operon transcription in Thermococcus kodakaraensis. J Bacteriol (2008) 1.11
Phosphoenolpyruvate synthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis. Mol Microbiol (2006) 1.09
Structural insights on the translation initiation complex: ghosts of a universal initiation complex. Mol Microbiol (2007) 1.09
The rolling-circle plasmid pTN1 from the hyperthermophilic archaeon Thermococcus nautilus. Mol Microbiol (2007) 0.97
Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. Mol Cell Proteomics (2006) 0.97
New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA. J Mol Biol (2007) 0.90
Protein biogenesis in Archaea: addressing translation initiation using an in vitro protein synthesis system for Haloferax volcanii. FEMS Microbiol Lett (2007) 0.84
Translation initiation with GUC codon in the archaeon Halobacterium salinarum: implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA. Mol Microbiol (2006) 0.84
Sulfolobus solfataricus translation initiation factor 1 stimulates translation initiation complex formation. RNA (2006) 0.82
The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res (2002) 4.58
Molecular identification of bacteria and Eukarya inhabiting an Antarctic cryoconite hole. Extremophiles (2003) 1.47
Archaeal chromatin proteins: different structures but common function? Curr Opin Microbiol (2005) 1.40
TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. J Mol Biol (2006) 1.36
Affinity purification of an archaeal DNA replication protein network. MBio (2010) 1.35
Archaeal histones and the origin of the histone fold. Curr Opin Microbiol (2006) 1.29
Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences. J Mol Biol (2005) 1.29
Bacterial recovery from ancient glacial ice. Environ Microbiol (2003) 1.23
A novel DNA nuclease is stimulated by association with the GINS complex. Nucleic Acids Res (2011) 1.19
Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Appl Environ Microbiol (2009) 1.16
Archaeal intrinsic transcription termination in vivo. J Bacteriol (2009) 1.15
Histones in crenarchaea. J Bacteriol (2005) 1.15
Polarity in archaeal operon transcription in Thermococcus kodakaraensis. J Bacteriol (2008) 1.11
Archaeal histone tetramerization determines DNA affinity and the direction of DNA supercoiling. J Biol Chem (2002) 1.10
Transcription and translation are coupled in Archaea. Mol Biol Evol (2007) 1.10
Thermococcus kodakarensis encodes three MCM homologs but only one is essential. Nucleic Acids Res (2011) 1.02
Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive. Mol Microbiol (2008) 1.02
Archaeal DNA polymerase D but not DNA polymerase B is required for genome replication in Thermococcus kodakarensis. J Bacteriol (2013) 1.01
Transcription by an archaeal RNA polymerase is slowed but not blocked by an archaeal nucleosome. J Bacteriol (2004) 1.00
Deletion of alternative pathways for reductant recycling in Thermococcus kodakarensis increases hydrogen production. Mol Microbiol (2011) 1.00
Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermautotrophicus. J Bacteriol (2005) 0.97
Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and eIF2B regulation. J Mol Biol (2009) 0.92
Both DNA and histone fold sequences contribute to archaeal nucleosome stability. J Biol Chem (2001) 0.91
Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis. BMC Genomics (2014) 0.90
Deletion of the archaeal histone in Methanosarcina mazei Gö1 results in reduced growth and genomic transcription. Mol Microbiol (2007) 0.90
Archaeal minichromosome maintenance (MCM) helicase can unwind DNA bound by archaeal histones and transcription factors. J Biol Chem (2006) 0.87
Nanoarchaeal origin of histone H3? J Bacteriol (2008) 0.86
TrpY regulation of trpB2 transcription in Methanothermobacter thermautotrophicus. J Bacteriol (2008) 0.86
In vitro transcription assays using components from Methanothermobacter thermautotrophicus. Methods Enzymol (2003) 0.85
Thermococcus kodakarensis has two functional PCNA homologs but only one is required for viability. Extremophiles (2013) 0.85
Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator. J Bacteriol (2007) 0.85
Use of a restriction enzyme-digested PCR product as substrate for helicase assays. Nucleic Acids Res (2005) 0.84
An archaeal histone is required for transformation of Thermococcus kodakarensis. J Bacteriol (2012) 0.83
Transcription by Methanothermobacter thermautotrophicus RNA polymerase in vitro releases archaeal transcription factor B but not TATA-box binding protein from the template DNA. J Bacteriol (2004) 0.83
Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs. BMC Genomics (2013) 0.83
The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeon Thermococcus kodakaraensis. FEMS Microbiol Lett (2009) 0.80
Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation. J Biol Chem (2010) 0.80
Biology, biochemistry and the molecular machinery of Archaea. Curr Opin Microbiol (2005) 0.78
Isolation and characterization of an amiloride-resistant mutant of Methanothermobacter thermautotrophicus possessing a defective Na+/H+ antiport. FEMS Microbiol Lett (2007) 0.77
Archaea: very diverse, often different but never bad? Curr Opin Microbiol (2011) 0.76
Archaeal chromatin proteins histone HMtB and Alba have lost DNA-binding ability in laboratory strains of Methanothermobacter thermautotrophicus. Extremophiles (2008) 0.76
Conserved eukaryotic histone-fold residues substituted into an archaeal histone increase DNA affinity but reduce complex flexibility. J Bacteriol (2003) 0.75
Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.75
Biochemical analysis of neomycin-resistance in the methanoarchaeon Methanothermobacter thermautotrophicus and some implications for energetic processes in this strain. Anaerobe (2003) 0.75