Published in Mol Microbiol on September 03, 2007
Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Appl Environ Microbiol (2008) 1.40
Genetics Techniques for Thermococcus kodakarensis. Front Microbiol (2012) 1.06
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res (2010) 1.04
Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One (2013) 1.01
Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy. Front Microbiol (2015) 0.97
The common ancestor of archaea and eukarya was not an archaeon. Archaea (2013) 0.95
Archaeal extrachromosomal genetic elements. Microbiol Mol Biol Rev (2015) 0.94
Defining components of the chromosomal origin of replication of the hyperthermophilic archaeon Pyrococcus furiosus needed for construction of a stable replicating shuttle vector. Appl Environ Microbiol (2011) 0.94
Genetic manipulations of the hyperthermophilic piezophilic archaeon Thermococcus barophilus. Appl Environ Microbiol (2014) 0.83
An archaeal histone is required for transformation of Thermococcus kodakarensis. J Bacteriol (2012) 0.83
Diversity of CRISPR systems in the euryarchaeal Pyrococcales. RNA Biol (2013) 0.82
Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1. Appl Environ Microbiol (2013) 0.81
Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis. Extremophiles (2012) 0.80
Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation. J Biol Chem (2010) 0.80
Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles. Genome Announc (2014) 0.78
Precise determination, cross-recognition, and functional analysis of the double-strand origins of the rolling-circle replication plasmids in haloarchaea. J Bacteriol (2008) 0.76
Analyses of in vivo interactions between transcription factors and the archaeal RNA polymerase. Methods (2015) 0.75
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol (2008) 5.31
The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments. Nature (2003) 5.17
The virophage as a unique parasite of the giant mimivirus. Nature (2008) 4.09
An alternative flavin-dependent mechanism for thymidylate synthesis. Science (2002) 3.82
Redefining viruses: lessons from Mimivirus. Nat Rev Microbiol (2008) 3.27
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75
Viruses of the Archaea: a unifying view. Nat Rev Microbiol (2006) 2.61
UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli. EMBO J (2004) 2.59
Archaeal phylogeny based on ribosomal proteins. Mol Biol Evol (2002) 1.92
Evolution of DNA polymerase families: evidences for multiple gene exchange between cellular and viral proteins. J Mol Evol (2002) 1.91
A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell (2007) 1.89
Nucleosome chiral transition under positive torsional stress in single chromatin fibers. Mol Cell (2007) 1.76
Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox. Genome Biol (2004) 1.71
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol (2009) 1.69
Phylogeny and evolution of the Archaea: one hundred genomes later. Curr Opin Microbiol (2011) 1.68
The archeoviruses. FEMS Microbiol Rev (2011) 1.62
The Srs2 helicase activity is stimulated by Rad51 filaments on dsDNA: implications for crossover incidence during mitotic recombination. Mol Cell (2008) 1.62
Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? Genome Biol (2005) 1.60
Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast. EMBO J (2003) 1.59
Pyrococcus genome comparison evidences chromosome shuffling-driven evolution. Nucleic Acids Res (2002) 1.58
A unique virus release mechanism in the Archaea. Proc Natl Acad Sci U S A (2009) 1.47
The role played by viruses in the evolution of their hosts: a view based on informational protein phylogenies. Res Microbiol (2003) 1.43
An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences. BMC Evol Biol (2005) 1.42
Phylogenomics of type II DNA topoisomerases. Bioessays (2003) 1.42
A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes. Genome Biol (2009) 1.41
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? Nat Rev Microbiol (2010) 1.40
Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin. EMBO Rep (2003) 1.39
An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro. Nucleic Acids Res (2007) 1.36
Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein. J Biol Chem (2002) 1.30
Adsorption of DNA to mica mediated by divalent counterions: a theoretical and experimental study. Biophys J (2003) 1.29
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol (2009) 1.27
Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi. Appl Environ Microbiol (2002) 1.26
NurA, a novel 5'-3' nuclease gene linked to rad50 and mre11 homologs of thermophilic Archaea. EMBO Rep (2002) 1.25
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity. BMC Biol (2014) 1.25
The C-terminal domain of the bacterial SSB protein acts as a DNA maintenance hub at active chromosome replication forks. PLoS Genet (2010) 1.24
High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein--DNA complexes. Nucleic Acids Res (2007) 1.21
Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex. EMBO J (2008) 1.21
Crystal structure of the yeast Phox homology (PX) domain protein Grd19p complexed to phosphatidylinositol-3-phosphate. J Biol Chem (2003) 1.20
Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers. Archaea (2007) 1.19
HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories. Acta Crystallogr D Biol Crystallogr (2005) 1.19
Microviridae goes temperate: microvirus-related proviruses reside in the genomes of Bacteroidetes. PLoS One (2011) 1.18
Structural characterization of filaments formed by human Xrcc4-Cernunnos/XLF complex involved in nonhomologous DNA end-joining. Proc Natl Acad Sci U S A (2011) 1.18
Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance. Nucleic Acids Res (2009) 1.17
On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes. Res Microbiol (2010) 1.16
Structure of protein phosphatase methyltransferase 1 (PPM1), a leucine carboxyl methyltransferase involved in the regulation of protein phosphatase 2A activity. J Biol Chem (2003) 1.15
DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus. Nucleic Acids Res (2002) 1.14
The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea. Virology (2010) 1.13
A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya. Biol Direct (2008) 1.13
A new alpha-helical extension promotes RNA binding by the dsRBD of Rnt1p RNAse III. EMBO J (2004) 1.12
Diversity of virus-host systems in hypersaline Lake Retba, Senegal. Environ Microbiol (2010) 1.12
Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales. Res Microbiol (2008) 1.12
Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J Mol Biol (2010) 1.12
Crystal structure and functional characterization of yeast YLR011wp, an enzyme with NAD(P)H-FMN and ferric iron reductase activities. J Biol Chem (2004) 1.10
Crystal structure of the YDR533c S. cerevisiae protein, a class II member of the Hsp31 family. Structure (2004) 1.10
The Mre11 protein interacts with both Rad50 and the HerA bipolar helicase and is recruited to DNA following gamma irradiation in the archaeon Sulfolobus acidocaldarius. BMC Mol Biol (2008) 1.10
A type IV pilus mediates DNA binding during natural transformation in Streptococcus pneumoniae. PLoS Pathog (2013) 1.09
Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: a solution to DNA imaging by atomic force microscopy under high ionic strengths. Langmuir (2006) 1.08
Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation. Int J Syst Evol Microbiol (2003) 1.07
Structural characterization of Set1 RNA recognition motifs and their role in histone H3 lysine 4 methylation. J Mol Biol (2006) 1.07
The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol Biol Evol (2010) 1.07
Crystal structure of the PP2A phosphatase activator: implications for its PP2A-specific PPIase activity. Mol Cell (2006) 1.04
Simple and elegant design of a virion egress structure in Archaea. Proc Natl Acad Sci U S A (2011) 1.04
Viral proteins functioning in organelles: a cryptic origin? Trends Microbiol (2005) 1.04
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res (2010) 1.04
Massive activation of archaeal defense genes during viral infection. J Virol (2013) 1.03
Plasmids, viruses and virus-like membrane vesicles from Thermococcales. Biochem Soc Trans (2011) 1.03
Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea. Genome Biol Evol (2014) 1.03
Srs2 removes deadly recombination intermediates independently of its interaction with SUMO-modified PCNA. Nucleic Acids Res (2008) 1.03
In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya. Nucleic Acids Res (2012) 1.03
Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nat Commun (2013) 1.02
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol (2013) 1.02
Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi. J Biol Chem (2003) 1.01
Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One (2013) 1.01
Evidence for a Xer/dif system for chromosome resolution in archaea. PLoS Genet (2010) 1.01
Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome. Proc Natl Acad Sci U S A (2012) 1.01
The box H/ACA RNP assembly factor Naf1p contains a domain homologous to Gar1p mediating its interaction with Cbf5p. J Mol Biol (2007) 0.99
Functional assignment of KEOPS/EKC complex subunits in the biosynthesis of the universal t6A tRNA modification. Nucleic Acids Res (2013) 0.99
Unification of the globally distributed spindle-shaped viruses of the Archaea. J Virol (2013) 0.99
Hyperthermophilic archaea produce membrane vesicles that can transfer DNA. Environ Microbiol Rep (2012) 0.98
Postcards from the edge: structural genomics of archaeal viruses. Adv Virus Res (2012) 0.98
Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB. PLoS One (2011) 0.98
Transmission electron microscopy reveals an optimal HIV-1 nucleocapsid aggregation with single-stranded nucleic acids and the mature HIV-1 nucleocapsid protein. J Mol Biol (2006) 0.98
Targeting the deregulated spliceosome core machinery in cancer cells triggers mTOR blockade and autophagy. Cancer Res (2013) 0.98
G-quartets assembly within a G-rich DNA flap. A possible event at the center of the HIV-1 genome. Nucleic Acids Res (2002) 0.97
Structure of the yeast Pml1 splicing factor and its integration into the RES complex. Nucleic Acids Res (2008) 0.97
Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl Environ Microbiol (2004) 0.97
HIV-1 protease and reverse transcriptase control the architecture of their nucleocapsid partner. PLoS One (2007) 0.97
Structural insights into a new homodimeric self-activated GTPase family. EMBO Rep (2007) 0.97
High-throughput crystal-optimization strategies in the South Paris Yeast Structural Genomics Project: one size fits all? Acta Crystallogr D Biol Crystallogr (2005) 0.97
Acidianus filamentous virus 1 coat proteins display a helical fold spanning the filamentous archaeal viruses lineage. Proc Natl Acad Sci U S A (2009) 0.97