Published in Science on April 25, 2008
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol (2009) 2.86
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res (2009) 2.46
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol (2010) 2.03
Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA (2009) 1.97
Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep (2010) 1.92
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell (2012) 1.91
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci U S A (2011) 1.82
Coordinated histone modifications are associated with gene expression variation within and between species. Genome Res (2011) 1.49
Epigenetic variation in mangrove plants occurring in contrasting natural environment. PLoS One (2010) 1.43
Stable epigenetic effects impact adaptation in allopolyploid orchids (Dactylorhiza: Orchidaceae). Mol Biol Evol (2010) 1.42
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res (2012) 1.36
Computational identification and functional predictions of long noncoding RNA in Zea mays. PLoS One (2012) 1.25
Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation. J Virol (2009) 1.25
Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis. Genome Biol (2012) 1.16
RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci (2009) 1.14
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res (2008) 1.12
SET DOMAIN GROUP2 is the major histone H3 lysine [corrected] 4 trimethyltransferase in Arabidopsis. Proc Natl Acad Sci U S A (2010) 1.11
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biol (2012) 1.10
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. BMC Genomics (2012) 1.10
Gene expression analysis, proteomics, and network discovery. Plant Physiol (2009) 1.09
Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum. Plant Physiol (2011) 1.03
Co-evolution between transposable elements and their hosts: a major factor in genome size evolution? Chromosome Res (2011) 1.01
Control of transposon activity by a histone H3K4 demethylase in rice. Proc Natl Acad Sci U S A (2013) 1.00
Chromatin and DNA modifications in the Opaque2-mediated regulation of gene transcription during maize endosperm development. Plant Cell (2009) 0.95
High-throughput approaches for plant epigenomic studies. Curr Opin Plant Biol (2011) 0.95
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice. Proc Natl Acad Sci U S A (2014) 0.94
Exploring giant plant genomes with next-generation sequencing technology. Chromosome Res (2011) 0.91
Genomic basis for light control of plant development. Protein Cell (2012) 0.91
Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality. Proc Natl Acad Sci U S A (2014) 0.91
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. BMC Plant Biol (2012) 0.91
Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot. Chromosoma (2010) 0.91
Epigenetics and its implications for ecotoxicology. Ecotoxicology (2011) 0.89
Identification of maize long non-coding RNAs responsive to drought stress. PLoS One (2014) 0.89
A Common histone modification code on C4 genes in maize and its conservation in Sorghum and Setaria italica. Plant Physiol (2013) 0.86
Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use. Plant Physiol (2010) 0.86
Epigenetic profiling of heterochromatic satellite DNA. Chromosoma (2011) 0.85
Compromised telomere maintenance in hypomethylated Arabidopsis thaliana plants. Nucleic Acids Res (2013) 0.85
Global changes in DNA methylation in seeds and seedlings of Pyrus communis after seed desiccation and storage. PLoS One (2013) 0.85
Epigenetics in traditional chinese pharmacy: a bioinformatic study at pharmacopoeia scale. Evid Based Complement Alternat Med (2011) 0.85
Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics (2014) 0.84
Environmental heterogeneity and phenotypic divergence: can heritable epigenetic variation aid speciation? Genet Res Int (2012) 0.84
Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis. J Exp Bot (2015) 0.84
Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications. BMC Plant Biol (2009) 0.82
Atypical epigenetic mark in an atypical location: cytosine methylation at asymmetric (CNN) sites within the body of a non-repetitive tomato gene. BMC Plant Biol (2011) 0.81
Cytosine methylation alteration in natural populations of Leymus chinensis induced by multiple abiotic stresses. PLoS One (2013) 0.81
Promoter variation and transcript divergence in Brassicaceae lineages of FLOWERING LOCUS T. PLoS One (2012) 0.81
Promoting gene expression in plants by permissive histone lysine methylation. Plant Signal Behav (2009) 0.81
Photosynthetic Genes and Genes Associated with the C4 Trait in Maize Are Characterized by a Unique Class of Highly Regulated Histone Acetylation Peaks on Upstream Promoters. Plant Physiol (2015) 0.81
Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes. PLoS One (2010) 0.80
Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq. Front Plant Sci (2015) 0.80
Hepatoprotective Effects of Chinese Medicinal Herbs: A Focus on Anti-Inflammatory and Anti-Oxidative Activities. Int J Mol Sci (2016) 0.80
Epigenetic marks in an adaptive water stress-responsive gene in tomato roots under normal and drought conditions. Epigenetics (2013) 0.79
Chilling-Mediated DNA Methylation Changes during Dormancy and Its Release Reveal the Importance of Epigenetic Regulation during Winter Dormancy in Apple (Malus x domestica Borkh.). PLoS One (2016) 0.79
Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes. Planta (2016) 0.78
Interconnection between flowering time control and activation of systemic acquired resistance. Front Plant Sci (2015) 0.78
Genetic, epigenetic, and HPLC fingerprint differentiation between natural and ex situ populations of Rhodiola sachalinensis from Changbai Mountain, China. PLoS One (2014) 0.77
Histone Modifications Define Expression Bias of Homoeologous Genomes in Allotetraploid Cotton. Plant Physiol (2016) 0.75
Chromatin-Based Epigenetic Regulation of Plant Abiotic Stress Response. Curr Genomics (2016) 0.75
BABA-primed defense responses to Phytophthora infestans in the next vegetative progeny of potato. Front Plant Sci (2015) 0.75
A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice. Nat Commun (2017) 0.75
Development and Characterization of Somatic Hybrids of Ulva reticulata Forsskål (×) Monostroma oxyspermum (Kutz.)Doty. Front Plant Sci (2015) 0.75
Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima. Mol Ecol (2017) 0.75