Published in Genome Biol on August 24, 2012
Marine algae and land plants share conserved phytochrome signaling systems. Proc Natl Acad Sci U S A (2014) 1.30
Comparative genomics explains the evolutionary success of reef-forming corals. Elife (2016) 1.02
Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling. PLoS One (2012) 0.98
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants. Front Plant Sci (2015) 0.90
Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Front Plant Sci (2013) 0.90
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics (2014) 0.89
Algal photoreceptors: in vivo functions and potential applications. Planta (2013) 0.85
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat Commun (2016) 0.84
Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evol Biol (2014) 0.84
The long goodbye: the rise and fall of flavodoxin during plant evolution. J Exp Bot (2014) 0.83
Understanding nitrate assimilation and its regulation in microalgae. Front Plant Sci (2015) 0.81
Evolution of codon usage in the smallest photosynthetic eukaryotes and their giant viruses. Genome Biol Evol (2013) 0.81
Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Front Ecol Evol (2015) 0.81
The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution. Genome Biol Evol (2013) 0.81
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics (2016) 0.81
Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy. OMICS (2013) 0.80
Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean. Appl Environ Microbiol (2016) 0.79
A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri. PLoS Pathog (2016) 0.78
Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii. G3 (Bethesda) (2014) 0.78
Environmental selection pressures related to iron utilization are involved in the loss of the flavodoxin gene from the plant genome. Genome Biol Evol (2015) 0.78
Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome. ISME J (2017) 0.77
Diversity of Viruses Infecting the Green Microalga Ostreococcus lucimarinus. J Virol (2015) 0.77
Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. Mol Biol Evol (2014) 0.77
Survey of the green picoalga Bathycoccus genomes in the global ocean. Sci Rep (2016) 0.76
Fitness Effects of Spontaneous Mutations in Picoeukaryotic Marine Green Algae. G3 (Bethesda) (2016) 0.76
Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains. BMC Genomics (2015) 0.76
Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J (2016) 0.75
Spontaneous mutation rate in the smallest photosynthetic eukaryotes. Mol Biol Evol (2017) 0.75
Phylogenetic-Derived Insights into the Evolution of Sialylation in Eukaryotes: Comprehensive Analysis of Vertebrate β-Galactoside α2,3/6-Sialyltransferases (ST3Gal and ST6Gal). Int J Mol Sci (2016) 0.75
Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. PLoS One (2017) 0.75
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep (2017) 0.75
Marine Prasinoviruses and Their Tiny Plankton Hosts: A Review. Viruses (2017) 0.75
Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat Rev Microbiol (2016) 0.75
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages. ISME J (2015) 0.75
AS3MT-mediated tolerance to arsenic evolved by multiple independent horizontal gene transfers from bacteria to eukaryotes. PLoS One (2017) 0.75
Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes. Plant Cell Physiol (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res (2008) 27.83
ARACHNE: a whole-genome shotgun assembler. Genome Res (2002) 22.72
Primary production of the biosphere: integrating terrestrial and oceanic components Science (1998) 13.77
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
Global phytoplankton decline over the past century. Nature (2010) 6.66
Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet (2008) 6.21
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
Extraction of high molecular weight DNA from molluscs. Trends Genet (1993) 4.17
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (2010) 3.70
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58
Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science (2009) 3.31
Horizontal gene transfer: a critical view. Proc Natl Acad Sci U S A (2003) 3.27
Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature (2011) 2.60
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell (2010) 2.47
The natural history of group I introns. Trends Genet (2005) 2.45
The evolution of sex: a perspective from the fungal kingdom. Microbiol Mol Biol Rev (2010) 2.24
Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochem Biophys (2008) 1.95
Birth of a metabolic gene cluster in yeast by adaptive gene relocation. Nat Genet (2005) 1.86
The epigenetic landscape of plants. Science (2008) 1.78
Functional diversity of ankyrin repeats in microbial proteins. Trends Microbiol (2009) 1.58
Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiol Ecol (2004) 1.56
The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Glycobiology (2005) 1.54
i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets. Nucleic Acids Res (2011) 1.51
Do different surrogate methods detect lateral genetic transfer events of different relative ages? Trends Microbiol (2005) 1.48
SpliceMachine: predicting splice sites from high-dimensional local context representations. Bioinformatics (2004) 1.47
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res (2009) 1.44
Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing. ISME J (2010) 1.38
Identifying clusters of functionally related genes in genomes. Bioinformatics (2007) 1.37
Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist (2009) 1.36
Possible role of horizontal gene transfer in the colonization of sea ice by algae. PLoS One (2012) 1.31
Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri. PLoS One (2008) 1.25
Anterograde transport of algal scales through the Golgi complex is not mediated by vesicles. Trends Cell Biol (1995) 1.23
Structure-function analysis of the human sialyltransferase ST3Gal I: role of n-glycosylation and a novel conserved sialylmotif. J Biol Chem (2004) 1.21
Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel. FEMS Microbiol Ecol (2010) 1.13
Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. ISME J (2011) 1.07
Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environ Microbiol (2011) 1.06
Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR). FEMS Microbiol Ecol (2006) 1.03
Marine prasinovirus genomes show low evolutionary divergence and acquisition of protein metabolism genes by horizontal gene transfer. J Virol (2010) 1.03
Scale formation in algae. J Electron Microsc Tech (1991) 1.03
Clues about the genetic basis of adaptation emerge from comparing the proteomes of two Ostreococcus ecotypes (Chlorophyta, Prasinophyceae). Mol Biol Evol (2008) 1.01
A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer. BMC Evol Biol (2007) 0.98
Acquisition and maintenance of resistance to viruses in eukaryotic phytoplankton populations. Environ Microbiol (2011) 0.95
Pond scum genomics: the genomes of Chlamydomonas and Ostreococcus. Plant Cell (2008) 0.94
Abundance, spatial distribution and genetic diversity of Ostreococcus tauri viruses in two different environments. Environ Microbiol Rep (2010) 0.83
Genome diversity in the smallest marine photosynthetic eukaryotes. Res Microbiol (2011) 0.82
Chromulina pusilla Butcher; a dominant member of the ultraplankton. Nature (1951) 0.79
N-linked glycoproteins associated with flagellar scales in a flagellate green alga: characterization of interactions. Eur J Cell Biol (1992) 0.79
Studies on scale morphogenesis in the Golgi apparatus of Pyramimonas tetrarhynchus (Prasinophyceae). J Cell Sci (1979) 0.79
Enterotypes of the human gut microbiome. Nature (2011) 24.36
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature (2007) 18.04
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Genome evolution in yeasts. Nature (2004) 10.50
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (2002) 9.43
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet (2010) 8.07
The European database on small subunit ribosomal RNA. Nucleic Acids Res (2002) 7.80
Annotating genomes with massive-scale RNA sequencing. Genome Biol (2008) 7.73
Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol (2005) 7.19
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res (2002) 6.43
Phylogenomics revives traditional views on deep animal relationships. Curr Biol (2009) 5.89
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature (2006) 5.06
The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2002) 5.00
Modeling gene and genome duplications in eukaryotes. Proc Natl Acad Sci U S A (2005) 5.00
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics (2004) 4.95
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (2007) 4.89
The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
ROS signaling: the new wave? Trends Plant Sci (2011) 4.45
A role for RNAi in the selective correction of DNA methylation defects. Science (2009) 4.30
Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res (2003) 4.19
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res (2004) 4.19
Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature (2006) 4.06
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J Comput Biol (2002) 4.05
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A (2004) 3.97
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS One (2008) 3.94
Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell (2002) 3.91
From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays (2005) 3.91
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (2010) 3.60
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res (2006) 3.53
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature (2012) 3.53
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet (2011) 3.52
The genome of Theobroma cacao. Nat Genet (2010) 3.47
Genome duplication and the origin of angiosperms. Trends Ecol Evol (2005) 3.46
The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature (2011) 3.29
Polydnaviruses of braconid wasps derive from an ancestral nudivirus. Science (2009) 3.29
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci U S A (2009) 3.13
Mapping the epigenetic basis of complex traits. Science (2014) 3.13
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci U S A (2004) 3.13
Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res (2002) 3.12
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J Mol Biol (2009) 3.10
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res (2004) 3.02