Published in J Bacteriol on July 18, 2008
The novel two-component regulatory system BfiSR regulates biofilm development by controlling the small RNA rsmZ through CafA. J Bacteriol (2010) 1.29
Loss of RNase R induces competence development in Legionella pneumophila. J Bacteriol (2008) 1.08
Transcriptome dynamics of Pseudomonas putida KT2440 under water stress. Appl Environ Microbiol (2011) 0.86
rnr gene from the antarctic bacterium Pseudomonas syringae Lz4W, encoding a psychrophilic RNase R. Appl Environ Microbiol (2011) 0.82
Mediators of lipid A modification, RNA degradation, and central intermediary metabolism facilitate the growth of Legionella pneumophila at low temperatures. Curr Microbiol (2009) 0.82
Synergies between RNA degradation and trans-translation in Streptococcus pneumoniae: cross regulation and co-transcription of RNase R and SmpB. BMC Microbiol (2012) 0.80
Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli. BMC Genomics (2015) 0.79
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol (2004) 101.91
Normalization of cDNA microarray data. Methods (2003) 18.69
The growth of micro-organisms in relation to their energy supply. J Gen Microbiol (1960) 15.63
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol (1990) 14.38
Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc Natl Acad Sci U S A (1981) 8.20
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol (2002) 8.11
A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica. Gene (1991) 7.34
Analysis of Pseudomonas gene products using lacIq/Ptrp-lac plasmids and transposons that confer conditional phenotypes. Gene (1993) 5.14
Inorganic polyphosphate is needed for swimming, swarming, and twitching motilities of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A (2000) 4.82
Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res (2001) 3.88
A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa. Mol Microbiol (2003) 3.05
The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem (1998) 2.41
Transcription termination and anti-termination in E. coli. Genes Cells (2002) 2.37
An important role for RNase R in mRNA decay. Mol Cell (2005) 2.33
Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc Natl Acad Sci U S A (2003) 2.25
mRNA decay in Escherichia coli comes of age. J Bacteriol (2002) 2.20
Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA. Mol Microbiol (2003) 1.71
Emerging features of mRNA decay in bacteria. RNA (2000) 1.68
vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J Bacteriol (1992) 1.59
RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner. Mol Microbiol (2006) 1.57
Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci U S A (2001) 1.57
Participation of 3'-to-5' exoribonucleases in the turnover of Bacillus subtilis mRNA. J Bacteriol (2005) 1.52
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol (2003) 1.44
Elevation of RNase R in response to multiple stress conditions. J Biol Chem (2005) 1.38
fleQ, the gene encoding the major flagellar regulator of Pseudomonas aeruginosa, is sigma70 dependent and is downregulated by Vfr, a homolog of Escherichia coli cyclic AMP receptor protein. J Bacteriol (2002) 1.36
Interaction of the antiactivator FleN with the transcriptional activator FleQ regulates flagellar number in Pseudomonas aeruginosa. J Bacteriol (2001) 1.35
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
RNase R affects gene expression in stationary phase: regulation of ompA. Mol Microbiol (2006) 1.28
Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. J Biol Chem (2005) 1.23
Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Mol Microbiol (2005) 1.21
Species-specific repetitive extragenic palindromic (REP) sequences in Pseudomonas putida. Nucleic Acids Res (2002) 1.18
Exoribonuclease R in Pseudomonas syringae is essential for growth at low temperature and plays a novel role in the 3' end processing of 16 and 5 S ribosomal RNA. J Biol Chem (2007) 1.17
Cold shock exoribonuclease R (VacB) is involved in Aeromonas hydrophila pathogenesis. J Bacteriol (2008) 1.11
Functional genomics of stress response in Pseudomonas putida KT2440. J Bacteriol (2006) 1.09
Inactivation of the Pseudomonas putida cytochrome o ubiquinol oxidase leads to a significant change in the transcriptome and to increased expression of the CIO and cbb3-1 terminal oxidases. Environ Microbiol (2006) 1.06
REP code: defining bacterial identity in extragenic space. Environ Microbiol (2005) 1.03
Co-evolution of tRNA 3' trailer sequences with 3' processing enzymes in bacteria. RNA (2005) 0.95
Two small RNAs, CrcY and CrcZ, act in concert to sequester the Crc global regulator in Pseudomonas putida, modulating catabolite repression. Mol Microbiol (2011) 1.70
Population structure of Pseudomonas aeruginosa from five Mediterranean countries: evidence for frequent recombination and epidemic occurrence of CC235. PLoS One (2011) 1.48
Overexpression of the multidrug efflux pumps MexCD-OprJ and MexEF-OprN is associated with a reduction of type III secretion in Pseudomonas aeruginosa. J Bacteriol (2005) 1.33
The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds. J Bacteriol (2004) 1.29
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
Structure of Pseudomonas aeruginosa populations analyzed by single nucleotide polymorphism and pulsed-field gel electrophoresis genotyping. J Bacteriol (2004) 1.24
Complex regulation of the synthesis of the compatible solute ectoine in the halophilic bacterium Chromohalobacter salexigens DSM 3043T. Microbiology (2004) 1.24
Expression of the Pseudomonas putida OCT plasmid alkane degradation pathway is modulated by two different global control signals: evidence from continuous cultures. J Bacteriol (2003) 1.21
Metabolic regulation of antibiotic resistance. FEMS Microbiol Rev (2011) 1.19
The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation. Nucleic Acids Res (2009) 1.14
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ Microbiol (2004) 1.11
The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator. Mol Microbiol (2007) 1.10
Inactivation of cytochrome o ubiquinol oxidase relieves catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway. J Bacteriol (2002) 1.07
Inactivation of the Pseudomonas putida cytochrome o ubiquinol oxidase leads to a significant change in the transcriptome and to increased expression of the CIO and cbb3-1 terminal oxidases. Environ Microbiol (2006) 1.06
Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa. J Bacteriol (2003) 1.06
The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses. Proteomics (2009) 1.04
The global regulator Crc modulates metabolism, susceptibility to antibiotics and virulence in Pseudomonas aeruginosa. Environ Microbiol (2010) 1.04
Structural and functional analysis of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF. J Biol Chem (2009) 1.03
Transcriptional regulation of mexR, the repressor of Pseudomonas aeruginosa mexAB-oprM multidrug efflux pump. FEMS Microbiol Lett (2002) 1.02
Overproduction of the multidrug efflux pump MexEF-OprN does not impair Pseudomonas aeruginosa fitness in competition tests, but produces specific changes in bacterial regulatory networks. Environ Microbiol (2012) 1.01
The target for the Pseudomonas putida Crc global regulator in the benzoate degradation pathway is the BenR transcriptional regulator. J Bacteriol (2007) 1.00
The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator. Environ Microbiol (2008) 0.99
A cytochrome c encoded by the nar operon is required for the synthesis of active respiratory nitrate reductase in Thermus thermophilus. FEBS Lett (2002) 0.92
Levels and activity of the Pseudomonas putida global regulatory protein Crc vary according to growth conditions. J Bacteriol (2005) 0.91
Thermus thermophilus as a cell factory for the production of a thermophilic Mn-dependent catalase which fails to be synthesized in an active form in Escherichia coli. Appl Environ Microbiol (2004) 0.91
Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain). Microb Ecol (2011) 0.91
Cohabitation of two different lexA regulons in Pseudomonas putida. J Bacteriol (2007) 0.90
Bacteria incorporation in deep-eutectic solvents through freeze-drying. Angew Chem Int Ed Engl (2010) 0.90
Growth of Pseudomonas putida at low temperature: global transcriptomic and proteomic analyses. Environ Microbiol Rep (2011) 0.90
High-level overproduction of Thermus enzymes in Streptomyces lividans. Appl Microbiol Biotechnol (2008) 0.88
The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes. J Biol Chem (2010) 0.87
The periplasmic space in Thermus thermophilus: evidence from a regulation-defective S-layer mutant overexpressing an alkaline phosphatase. Extremophiles (2002) 0.87
Synapsis and strand exchange in the resolution and DNA inversion reactions catalysed by the beta recombinase. Nucleic Acids Res (2003) 0.83
The Crc and Hfq proteins of Pseudomonas putida cooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs. Environ Microbiol (2014) 0.83
Glass-(nAg, nCu) biocide coatings on ceramic oxide substrates. PLoS One (2012) 0.82
The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy. Environ Microbiol (2012) 0.81
Pseudomonas putida growing at low temperature shows increased levels of CrcZ and CrcY sRNAs, leading to reduced Crc-dependent catabolite repression. Environ Microbiol (2012) 0.81
The phi29 transcriptional regulator contacts the nucleoid protein p6 to organize a repression complex. EMBO J (2002) 0.81
Efficient trans-cleavage by the Schistosoma mansoni SMalpha1 hammerhead ribozyme in the extreme thermophile Thermus thermophilus. Nucleic Acids Res (2002) 0.81
The contribution of proteomics to the unveiling of the survival strategies used by Pseudomonas putida in changing and hostile environments. Proteomics (2013) 0.81
The Crc protein inhibits the production of polyhydroxyalkanoates in Pseudomonas putida under balanced carbon/nitrogen growth conditions. Environ Microbiol (2013) 0.79
Deep eutectic solvent-assisted synthesis of biodegradable polyesters with antibacterial properties. Langmuir (2013) 0.78
Transcriptional and translational control through the 5'-leader region of the dmpR master regulatory gene of phenol metabolism. Environ Microbiol (2014) 0.77
Vascular cognitive impairment and dementia expenditures: 7-year inpatient cost description in community dwellers. Postgrad Med (2012) 0.76
The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain. Environ Microbiol Rep (2012) 0.76
Features of pseudomonads growing at low temperatures: another facet of their versatility. Environ Microbiol Rep (2014) 0.76
Are nonlethal targets useful for developing novel antimicrobials? Future Microbiol (2011) 0.76
The Pseudomonas putida HskA hybrid sensor kinase responds to redox signals and contributes to the adaptation of the electron transport chain composition in response to oxygen availability. Environ Microbiol Rep (2013) 0.76
Purification of a catalase from Thermus thermophilus via IMAC chromatography: effect of the support. Biotechnol Prog (2004) 0.75
Nanocomposites of silver nanoparticles embedded in glass nanofibres obtained by laser spinning. Nanoscale (2013) 0.75