Published in Evol Dev on September 22, 2008
Genomic expression dominance in allopolyploids. BMC Biol (2009) 1.71
DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton. PLoS Genet (2016) 1.39
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. BMC Genomics (2012) 1.36
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). BMC Genomics (2009) 1.05
Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome. PLoS Genet (2014) 1.02
A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.). BMC Genomics (2011) 0.94
Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton. G3 (Bethesda) (2012) 0.93
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Aberrant phenotype and transcriptome expression during fiber cell wall thickening caused by the mutation of the Im gene in immature fiber (im) mutant in Gossypium hirsutum L. BMC Genomics (2014) 0.90
Mapping Fusarium wilt race 1 resistance genes in cotton by inheritance, QTL and sequencing composition. Mol Genet Genomics (2011) 0.89
Comparative transcriptome analysis of short fiber mutants Ligon-lintless 1 and 2 reveals common mechanisms pertinent to fiber elongation in cotton (Gossypium hirsutum L.). PLoS One (2014) 0.85
Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. PLoS One (2011) 0.85
Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. BMC Genomics (2015) 0.84
An integrative analysis of four CESA isoforms specific for fiber cellulose production between Gossypium hirsutum and Gossypium barbadense. Planta (2013) 0.84
Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta (2014) 0.83
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proc Natl Acad Sci U S A (2011) 0.82
Plant domestication and resistance to herbivory. Int J Plant Genomics (2013) 0.80
Cotton domestication: dramatic changes in a single cell. BMC Biol (2010) 0.80
Comparative proteome analysis of the response of ramie under N, P and K deficiency. Planta (2014) 0.80
Transcriptomic analysis of fiber strength in upland cotton chromosome introgression lines carrying different Gossypium barbadense chromosomal segments. PLoS One (2014) 0.79
Analyzing serial cDNA libraries revealed reactive oxygen species and gibberellins signaling pathways in the salt response of Upland cotton (Gossypium hirsutum L.). Plant Cell Rep (2015) 0.79
Genomics of fungal disease resistance in tomato. Curr Genomics (2010) 0.77
Identification of Multiple Stress Responsive Genes by Sequencing a Normalized cDNA Library from Sea-Land Cotton (Gossypium barbadense L.). PLoS One (2016) 0.77
Domestication-driven Gossypium profilin 1 (GhPRF1) gene transduces early flowering phenotype in tobacco by spatial alteration of apical/floral-meristem related gene expression. BMC Plant Biol (2016) 0.75
Elucidation of Nuclear and Organellar Genomes of Gossypium hirsutum: Furthering Studies of Species Evolution and Applications for Crop Improvement. Biology (Basel) (2013) 0.75
Polyploidy and genome evolution in plants. Curr Opin Plant Biol (2005) 5.30
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci U S A (2003) 4.62
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00
Evolutionary genetics of genome merger and doubling in plants. Annu Rev Genet (2008) 3.45
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics (2004) 2.84
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res (2006) 2.69
Rate variation among nuclear genes and the age of polyploidy in Gossypium. Mol Biol Evol (2003) 2.64
Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol (2005) 2.53
Gene duplication and evolutionary novelty in plants. New Phytol (2009) 2.46
Novel patterns of gene expression in polyploid plants. Trends Genet (2005) 2.24
A global assembly of cotton ESTs. Genome Res (2006) 2.18
Toward sequencing cotton (Gossypium) genomes. Plant Physiol (2007) 2.16
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics (2004) 2.08
Epigenetic phenomena and the evolution of plant allopolyploids. Mol Phylogenet Evol (2003) 1.95
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. Am J Bot (2002) 1.90
Epigenetics and plant evolution. New Phytol (2005) 1.87
Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics (2007) 1.84
Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics (2009) 1.71
Genomic expression dominance in allopolyploids. BMC Biol (2009) 1.71
Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytol (2009) 1.66
A bountiful harvest: genomic insights into crop domestication phenotypes. Annu Rev Plant Biol (2013) 1.52
A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics (2006) 1.51
Development and mapping of SNP assays in allotetraploid cotton. Theor Appl Genet (2012) 1.43
Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proc Natl Acad Sci U S A (2008) 1.38
A majority of cotton genes are expressed in single-celled fiber. Planta (2007) 1.38
Homoeologous nonreciprocal recombination in polyploid cotton. New Phytol (2009) 1.37
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. BMC Genomics (2012) 1.36
Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 1. Identification of genomic regions from winter germplasm. Theor Appl Genet (2006) 1.36
PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms. G3 (Bethesda) (2013) 1.34
A draft physical map of a D-genome cotton species (Gossypium raimondii). BMC Genomics (2010) 1.32
Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.). Theor Appl Genet (2013) 1.31
Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata). BMC Genomics (2011) 1.30
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theor Appl Genet (2005) 1.29
The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. PLoS Genet (2008) 1.28
Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae). Am J Bot (2004) 1.24
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proc Natl Acad Sci U S A (2009) 1.17
Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). Plant J (2007) 1.17
Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. J Integr Plant Biol (2010) 1.15
Quantitative trait loci for resistance to Sclerotinia sclerotiorum and its association with a homeologous non-reciprocal transposition in Brassica napus L. Theor Appl Genet (2005) 1.14
Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics (2005) 1.13
Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics (2007) 1.12
Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered (2006) 1.12
Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biol Evol (2011) 1.10
Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution (2003) 1.09
Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation. Plant Mol Biol (2011) 1.08
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. G3 (Bethesda) (2013) 1.07
Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics (2008) 1.06
Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). BMC Genomics (2009) 1.05
Intron size and genome size in plants. Mol Biol Evol (2002) 1.05
Pelvic hydatidosis mimicking a malignant multicystic ovarian tumor. Korean J Parasitol (2010) 1.03
Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theor Appl Genet (2005) 1.00
Targeted sequence capture as a powerful tool for evolutionary analysis. Am J Bot (2012) 0.98
Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium). Mol Biol Evol (2002) 0.96
Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. J Hered (2009) 0.95
Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. New Phytol (2013) 0.94
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence. Genome Biol Evol (2014) 0.94
Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium. Genome (2008) 0.94
Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton. G3 (Bethesda) (2012) 0.93
A phylogenetic analysis of indel dynamics in the cotton genus. Mol Biol Evol (2008) 0.92
BamBam: genome sequence analysis tools for biologists. BMC Res Notes (2014) 0.91
Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea. Am J Bot (2008) 0.91
Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies. Mol Biol Evol (2014) 0.90
The history and disposition of transposable elements in polyploid Gossypium. Genome (2010) 0.90
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. Genome Biol Evol (2013) 0.89
Multiple patterns of rDNA evolution following polyploidy in Oryza. Mol Phylogenet Evol (2009) 0.89
Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts. BMC Genomics (2014) 0.88
Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Genetics (2011) 0.87
PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS. Econ Bot (2006) 0.85
Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium. BMC Plant Biol (2014) 0.84
Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L. Planta Med (2007) 0.83
Cycloheximide treatment of cotton ovules alters the abundance of specific classes of mRNAs and generates novel ESTs for microarray expression profiling. Mol Genet Genomics (2005) 0.83
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress. PLoS One (2013) 0.83
Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta (2014) 0.83
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proc Natl Acad Sci U S A (2011) 0.82
CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol (2014) 0.81
Tobacco genomes quickly go up in smoke. New Phytol (2007) 0.80
Methods for mapping and categorization of DNA sequence reads from allopolyploid organisms. BMC Genet (2015) 0.80
The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco. Mol Biol Evol (2012) 0.79
Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton. BMC Res Notes (2014) 0.78
The hairy problem of epigenetics in evolution. New Phytol (2011) 0.78