Published in Brief Bioinform on October 29, 2008
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Seven new loci associated with age-related macular degeneration. Nat Genet (2013) 3.81
Protein subfamily assignment using the Conserved Domain Database. BMC Res Notes (2008) 3.62
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75
BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus. Nat Genet (2006) 2.68
Identification and characterization of rod-derived cone viability factor. Nat Genet (2004) 2.63
Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome. Am J Hum Genet (2006) 2.44
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res (2002) 2.24
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Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene (2004) 2.19
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res (2011) 2.06
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ADCK3, an ancestral kinase, is mutated in a form of recessive ataxia associated with coenzyme Q10 deficiency. Am J Hum Genet (2008) 2.04
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Annotation of functional sites with the Conserved Domain Database. Database (Oxford) (2012) 1.81
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Identification of a subunit of a novel Kleisin-beta/SMC complex as a potential substrate of protein phosphatase 2A. Curr Biol (2003) 1.41
The evolutionary origin of peroxisomes: an ER-peroxisome connection. Mol Biol Evol (2006) 1.39
Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. Genome Res (2008) 1.36
Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18). J Med Genet (2013) 1.32
Cell-specific interaction of retinoic acid receptors with target genes in mouse embryonic fibroblasts and embryonic stem cells. Mol Cell Biol (2010) 1.30
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures. BMC Bioinformatics (2012) 1.29
Sequence and comparative genomic analysis of actin-related proteins. Mol Biol Cell (2005) 1.28
TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes Dev (2009) 1.27
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Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.25
Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential. BMC Mol Biol (2007) 1.24
Identification and functional characterization of a new member of the human Mcm protein family: hMcm8. Nucleic Acids Res (2003) 1.23
Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.18
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A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. BMC Genomics (2007) 1.17
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinformatics (2010) 1.16
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Res (2011) 1.16
Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization. G3 (Bethesda) (2012) 1.12
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res (2006) 1.08
Signature of the oligomeric behaviour of nuclear receptors at the sequence and structural level. EMBO Rep (2004) 1.08
Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection. BMC Genomics (2008) 1.08
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RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts. PLoS One (2012) 1.06
Spectrum of rhodopsin mutations in French autosomal dominant rod-cone dystrophy patients. Invest Ophthalmol Vis Sci (2010) 1.05
Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program. Hum Mol Genet (2006) 1.05
ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res (2006) 1.04
LEON: multiple aLignment Evaluation Of Neighbours. Nucleic Acids Res (2004) 1.04
Next generation sequencing for molecular diagnosis of neuromuscular diseases. Acta Neuropathol (2012) 1.03
Mitochondrial genome evolution in a single protoploid yeast species. G3 (Bethesda) (2012) 1.02
Defining and characterizing protein surface using alpha shapes. Proteins (2009) 1.01
A new protein linear motif benchmark for multiple sequence alignment software. BMC Bioinformatics (2008) 0.99
Pitfalls of homozygosity mapping: an extended consanguineous Bardet-Biedl syndrome family with two mutant genes (BBS2, BBS10), three mutations, but no triallelism. Eur J Hum Genet (2006) 0.98
Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription. Nucleic Acids Res (2010) 0.97
RReportGenerator: automatic reports from routine statistical analysis using R. Bioinformatics (2007) 0.97
The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina. Hum Mol Genet (2009) 0.97
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. Nucleic Acids Res (2005) 0.97
Insights into metazoan evolution from Alvinella pompejana cDNAs. BMC Genomics (2010) 0.97
The thioredoxin-like protein rod-derived cone viability factor (RdCVFL) interacts with TAU and inhibits its phosphorylation in the retina. Mol Cell Proteomics (2009) 0.96
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinformatics (2009) 0.95
Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp). J Biol Chem (2011) 0.94
Density of points clustering, application to transcriptomic data analysis. Nucleic Acids Res (2002) 0.94
Phosphorylation by PKA potentiates retinoic acid receptor alpha activity by means of increasing interaction with and phosphorylation by cyclin H/cdk7. Proc Natl Acad Sci U S A (2006) 0.93
Homozygosity mapping and candidate prioritization identify mutations, missed by whole-exome sequencing, in SMOC2, causing major dental developmental defects. Am J Hum Genet (2011) 0.93
In vivo topoisomerase I inhibition attenuates the expression of hypoxia-inducible factor 1α target genes and decreases tumor angiogenesis. Mol Med (2012) 0.92
MSV3d: database of human MisSense Variants mapped to 3D protein structure. Database (Oxford) (2012) 0.92
Controversies in modern evolutionary biology: the imperative for error detection and quality control. BMC Genomics (2012) 0.90
Nonrandom variations in human cancer ESTs indicate that mRNA heterogeneity increases during carcinogenesis. Proc Natl Acad Sci U S A (2007) 0.89
Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse. Mol Cell Proteomics (2003) 0.89
M13 endopeptidases: New conserved motifs correlated with structure, and simultaneous phylogenetic occurrence of PHEX and the bony fish. Proteins (2002) 0.88
Proteome adaptation to high temperatures in the ectothermic hydrothermal vent Pompeii worm. PLoS One (2012) 0.88
Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism. BMC Genomics (2012) 0.88
Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26. Genome Biol Evol (2013) 0.88
Transcriptomic analysis of human retinal detachment reveals both inflammatory response and photoreceptor death. PLoS One (2011) 0.88
Surface properties and intracellular speciation revealed an original adaptive mechanism to arsenic in the acid mine drainage bio-indicator Euglena mutabilis. Appl Microbiol Biotechnol (2011) 0.87
PromAn: an integrated knowledge-based web server dedicated to promoter analysis. Nucleic Acids Res (2006) 0.87
Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species. Curr Genet (2010) 0.86
RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina. BMC Genomics (2008) 0.86
SM2PH-db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases. Hum Mutat (2010) 0.85
M-ORBIS: mapping of molecular binding sites and surfaces. Nucleic Acids Res (2010) 0.85
KD4v: Comprehensible Knowledge Discovery System for Missense Variant. Nucleic Acids Res (2012) 0.85
Prebiotic-like chemistry on Titan. Chem Soc Rev (2012) 0.84
Amylases without known homologues discovered in an acid mine drainage: significance and impact. Sci Rep (2012) 0.84
Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family. PLoS One (2009) 0.83
Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences. BMC Evol Biol (2008) 0.83
vALId: validation of protein sequence quality based on multiple alignment data. J Bioinform Comput Biol (2005) 0.83
℮-conome: an automated tissue counting platform of cone photoreceptors for rodent models of retinitis pigmentosa. BMC Ophthalmol (2011) 0.82
Genome-wide analysis of intraspecific transposon diversity in yeast. BMC Genomics (2013) 0.82
Strategies for reliable exploitation of evolutionary concepts in high throughput biology. Evol Bioinform Online (2008) 0.81
An unusual retinal phenotype associated with a novel mutation in RHO. Arch Ophthalmol (2010) 0.81