Published in Nucleic Acids Res on July 01, 2006
Ikaros represses the transcriptional response to Notch signaling in T-cell development. Mol Cell Biol (2008) 1.33
PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Res (2007) 1.11
The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina. Hum Mol Genet (2009) 0.97
Transcriptional activation of REST by Sp1 in Huntington's disease models. PLoS One (2010) 0.87
Phylogeny disambiguates the evolution of heat-shock cis-regulatory elements in Drosophila. PLoS One (2010) 0.84
Functional promoter testing using a modified lentiviral transfer vector. Mol Vis (2007) 0.81
Contrasting patterns of transposable element insertions in Drosophila heat-shock promoters. PLoS One (2009) 0.79
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets. Nucleic Acids Res (2007) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
Prediction of complete gene structures in human genomic DNA. J Mol Biol (1997) 58.76
Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res (2004) 24.52
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res (2003) 23.03
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res (2006) 22.20
DNA binding sites: representation and discovery. Bioinformatics (2000) 16.01
Human-mouse genome comparisons to locate regulatory sites. Nat Genet (2000) 8.08
Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res (2002) 7.89
Computational identification of promoters and first exons in the human genome. Nat Genet (2001) 5.88
Identification of conserved regulatory elements by comparative genome analysis. J Biol (2003) 5.11
ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res (2004) 4.99
rVISTA 2.0: evolutionary analysis of transcription factor binding sites. Nucleic Acids Res (2004) 4.93
Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J Mol Biol (1988) 4.75
Scoring residue conservation. Proteins (2002) 4.66
Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. Neuron (1997) 4.33
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res (2006) 4.32
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res (2006) 2.52
EPD in its twentieth year: towards complete promoter coverage of selected model organisms. Nucleic Acids Res (2006) 2.49
The leucine zipper of NRL interacts with the CRX homeodomain. A possible mechanism of transcriptional synergy in rhodopsin regulation. J Biol Chem (2000) 1.76
CONREAL web server: identification and visualization of conserved transcription factor binding sites. Nucleic Acids Res (2005) 1.25
FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting. Nucleic Acids Res (2005) 0.99
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins (2005) 6.57
EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy. Nat Med (2011) 6.21
Seven new loci associated with age-related macular degeneration. Nat Genet (2013) 3.81
Interim results from the international trial of Second Sight's visual prosthesis. Ophthalmology (2012) 3.35
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75
BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus. Nat Genet (2006) 2.68
Identification and characterization of rod-derived cone viability factor. Nat Genet (2004) 2.63
Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome. Am J Hum Genet (2006) 2.44
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res (2002) 2.24
MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics (2006) 2.23
Using spectral-domain optical coherence tomography imaging to identify the presence of retinal silicone oil emulsification after silicone oil tamponade. Retina (2013) 2.22
Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene (2004) 2.19
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol (2008) 2.16
Role of hyaluronidase in diplopia after peribulbar anesthesia for cataract surgery. Ophthalmology (2005) 2.10
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. Nucleic Acids Res (2010) 2.05
ADCK3, an ancestral kinase, is mutated in a form of recessive ataxia associated with coenzyme Q10 deficiency. Am J Hum Genet (2008) 2.04
TRPM1 is mutated in patients with autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2009) 1.93
NMNAT1 mutations cause Leber congenital amaurosis. Nat Genet (2012) 1.86
Panretinal, high-resolution color photography of the mouse fundus. Invest Ophthalmol Vis Sci (2007) 1.82
Development and application of a next-generation-sequencing (NGS) approach to detect known and novel gene defects underlying retinal diseases. Orphanet J Rare Dis (2012) 1.79
PipeAlign: A new toolkit for protein family analysis. Nucleic Acids Res (2003) 1.78
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PLoS One (2011) 1.65
Role of miR-34c microRNA in the late steps of spermatogenesis. RNA (2010) 1.60
High resolution fundus imaging by confocal scanning laser ophthalmoscopy in the mouse. Vision Res (2005) 1.59
Complete exon sequencing of all known Usher syndrome genes greatly improves molecular diagnosis. Orphanet J Rare Dis (2011) 1.57
Foveal damage in habitual poppers users. Arch Ophthalmol (2011) 1.56
Poppers-associated retinal toxicity. N Engl J Med (2010) 1.54
Functional cone rescue by RdCVF protein in a dominant model of retinitis pigmentosa. Mol Ther (2009) 1.53
goCluster integrates statistical analysis and functional interpretation of microarray expression data. Bioinformatics (2005) 1.50
Inherited retinal degenerations: therapeutic prospects. Biol Cell (2004) 1.44
CCR2(+) monocytes infiltrate atrophic lesions in age-related macular disease and mediate photoreceptor degeneration in experimental subretinal inflammation in Cx3cr1 deficient mice. EMBO Mol Med (2013) 1.42
En Face OCT Imaging for the Diagnosis of Outer Retinal Tubulations in Age-Related Macular Degeneration. J Ophthalmol (2012) 1.39
The evolutionary origin of peroxisomes: an ER-peroxisome connection. Mol Biol Evol (2006) 1.39
Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6. Proc Natl Acad Sci U S A (2010) 1.39
EYS is a major gene for rod-cone dystrophies in France. Hum Mutat (2010) 1.39
Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. Genome Res (2008) 1.36
Optical coherence tomography findings in tamoxifen retinopathy. Am J Ophthalmol (2005) 1.36
CRB1 mutations in inherited retinal dystrophies. Hum Mutat (2011) 1.34
Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18). J Med Genet (2013) 1.32
Foveal shape and structure in a normal population. Invest Ophthalmol Vis Sci (2011) 1.32
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. Database (Oxford) (2010) 1.31
Cell-specific interaction of retinoic acid receptors with target genes in mouse embryonic fibroblasts and embryonic stem cells. Mol Cell Biol (2010) 1.30
Sequence and comparative genomic analysis of actin-related proteins. Mol Biol Cell (2005) 1.28
TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes Dev (2009) 1.27
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinformatics (2011) 1.25
Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.25
Anxiety and depression prevalence rates in age-related macular degeneration. Invest Ophthalmol Vis Sci (2007) 1.25
Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential. BMC Mol Biol (2007) 1.24
Identification and functional characterization of a new member of the human Mcm protein family: hMcm8. Nucleic Acids Res (2003) 1.23
Rod-derived cone viability factor for treating blinding diseases: from clinic to redox signaling. Sci Transl Med (2010) 1.20
Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.18
Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3. Hum Mol Genet (2012) 1.18
PtdIns5P regulation through evolution: roles in membrane trafficking? Trends Biochem Sci (2008) 1.17
A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. BMC Genomics (2007) 1.17
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinformatics (2010) 1.16
Localization of Usher 1 proteins to the photoreceptor calyceal processes, which are absent from mice. J Cell Biol (2012) 1.16
Retinal degenerations: from cell signaling to cell therapy; pre-clinical and clinical issues. Curr Gene Ther (2007) 1.15
The glutamate transporter EAAT5 works as a presynaptic receptor in mouse rod bipolar cells. J Physiol (2006) 1.15
Rhodopsin maturation defects induce photoreceptor death by apoptosis: a fly model for RhodopsinPro23His human retinitis pigmentosa. Hum Mol Genet (2005) 1.14
Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes. Trends Genet (2005) 1.13
Retinal inner nuclear layer microcystic changes in optic nerve atrophy: a novel spectral-domain OCT finding. Retina (2013) 1.11
Genotyping microarray for CSNB-associated genes. Invest Ophthalmol Vis Sci (2009) 1.10
Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection. BMC Genomics (2008) 1.08
Signature of the oligomeric behaviour of nuclear receptors at the sequence and structural level. EMBO Rep (2004) 1.08
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res (2006) 1.08
Adaptive optics imaging of geographic atrophy. Invest Ophthalmol Vis Sci (2013) 1.07
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? Genome Biol (2007) 1.07
RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts. PLoS One (2012) 1.06
Spectrum of rhodopsin mutations in French autosomal dominant rod-cone dystrophy patients. Invest Ophthalmol Vis Sci (2010) 1.05
Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program. Hum Mol Genet (2006) 1.05
LEON: multiple aLignment Evaluation Of Neighbours. Nucleic Acids Res (2004) 1.04
ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res (2006) 1.04
Prevalence and novelty of PRPF31 mutations in French autosomal dominant rod-cone dystrophy patients and a review of published reports. BMC Med Genet (2010) 1.03
Retinal-cell-conditioned medium prevents TNF-alpha-induced apoptosis of purified ganglion cells. Invest Ophthalmol Vis Sci (2005) 1.02
Evidence for glutamate-mediated excitotoxic mechanisms during photoreceptor degeneration in the rd1 mouse retina. Mol Vis (2005) 1.01
Viral-mediated RdCVF and RdCVFL expression protects cone and rod photoreceptors in retinal degeneration. J Clin Invest (2014) 1.01
The aging of the retina. Exp Gerontol (2003) 1.01
Defining and characterizing protein surface using alpha shapes. Proteins (2009) 1.01
Cross-platform gene expression signature of human spermatogenic failure reveals inflammatory-like response. Hum Reprod (2007) 1.00