Published in J Biol Chem on November 11, 2008
Iduronic acid in chondroitin/dermatan sulfate: biosynthesis and biological function. J Histochem Cytochem (2012) 1.04
Using engineered 2-O-sulfotransferase to determine the activity of heparan sulfate C5-epimerase and its mutants. J Biol Chem (2010) 0.95
Fell-Muir Lecture: chondroitin sulphate glycosaminoglycans: fun for some and confusion for others. Int J Exp Pathol (2012) 0.91
Two dermatan sulfate epimerases form iduronic acid domains in dermatan sulfate. J Biol Chem (2009) 0.91
Dermatan sulfate is involved in the tumorigenic properties of esophagus squamous cell carcinoma. Cancer Res (2012) 0.88
N-glycosylation of carnosinase influences protein secretion and enzyme activity: implications for hyperglycemia. Diabetes (2010) 0.87
Chondroitin sulfate "wobble motifs" modulate maintenance and differentiation of neural stem cells and their progeny. J Biol Chem (2011) 0.85
Occurrence of L-iduronic acid and putative D-glucuronyl C5-epimerases in prokaryotes. Glycoconj J (2011) 0.84
Heparin and related polysaccharides: synthesis using recombinant enzymes and metabolic engineering. Appl Microbiol Biotechnol (2015) 0.80
Structural and functional study of D-glucuronyl C5-epimerase. J Biol Chem (2015) 0.79
Catalytic mechanism and mode of action of the periplasmic alginate epimerase AlgG. J Biol Chem (2014) 0.79
Musculocontractural Ehlers-Danlos syndrome and neurocristopathies: dermatan sulfate is required for Xenopus neural crest cells to migrate and adhere to fibronectin. Dis Model Mech (2016) 0.77
Deciphering the Mode of Action of the Processive Polysaccharide Modifying Enzyme Dermatan Sulfate Epimerase 1 by Hydrogen-Deuterium Exchange Mass Spectrometry. Chem Sci (2015) 0.76
A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria. Cell Host Microbe (2010) 4.98
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci U S A (2002) 4.96
Assigning function to yeast proteins by integration of technologies. Mol Cell (2003) 4.58
Automated prediction of CASP-5 structures using the Robetta server. Proteins (2003) 3.41
Genetic basis of proteome variation in yeast. Nat Genet (2007) 3.04
Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins (2007) 3.01
De novo prediction of three-dimensional structures for major protein families. J Mol Biol (2002) 2.88
Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients. Mol Microbiol (2007) 2.87
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol (2007) 2.68
A p53-p66Shc signalling pathway controls intracellular redox status, levels of oxidation-damaged DNA and oxidative stress-induced apoptosis. Oncogene (2002) 2.55
Experimental protein mixture for validating tandem mass spectral analysis. OMICS (2002) 2.54
The study of macromolecular complexes by quantitative proteomics. Nat Genet (2003) 2.44
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science (2012) 2.34
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Mol Cell Proteomics (2004) 2.22
Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology (2005) 2.21
Mass spectrometry based targeted protein quantification: methods and applications. J Proteome Res (2009) 2.20
The Yeast Resource Center Public Data Repository. Nucleic Acids Res (2005) 2.19
Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infect Immun (2006) 2.18
Free modeling with Rosetta in CASP6. Proteins (2005) 2.10
Transcription factor Foxp3 and its protein partners form a complex regulatory network. Nat Immunol (2012) 2.10
A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe (2012) 2.08
Genetic variation shapes protein networks mainly through non-transcriptional mechanisms. PLoS Biol (2011) 2.08
LPS remodeling is an evolved survival strategy for bacteria. Proc Natl Acad Sci U S A (2012) 2.05
Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal Chem (2009) 1.96
Prediction of CASP6 structures using automated Robetta protocols. Proteins (2005) 1.94
openBIS: a flexible framework for managing and analyzing complex data in biology research. BMC Bioinformatics (2011) 1.91
Quantitative proteomic analysis of Myc oncoprotein function. EMBO J (2002) 1.89
A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Commun Mass Spectrom (2003) 1.85
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. ISME J (2010) 1.80
The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. BMC Genomics (2011) 1.79
Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis (2002) 1.78
The secreted serine protease xHtrA1 stimulates long-range FGF signaling in the early Xenopus embryo. Dev Cell (2007) 1.75
Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities. Cell Microbiol (2009) 1.66
Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. Proteomics (2003) 1.62
Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry. Anal Chem (2006) 1.61
Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Mol Cell Proteomics (2007) 1.58
Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique. Anal Chem (2010) 1.58
A Francisella mutant in lipid A carbohydrate modification elicits protective immunity. PLoS Pathog (2008) 1.58
Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Anal Chem (2008) 1.56
Salivary α-synuclein and DJ-1: potential biomarkers for Parkinson's disease. Brain (2011) 1.53
Protein identification using top-down. Mol Cell Proteomics (2011) 1.50
A computational tool to detect and avoid redundancy in selected reaction monitoring. Mol Cell Proteomics (2012) 1.46
Proteomic analysis of human prostasomes. Prostate (2003) 1.45
Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Anal Chem (2008) 1.44
Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiol Aging (2005) 1.39
Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proc Natl Acad Sci U S A (2003) 1.39
Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Res (2005) 1.39
An automated pipeline for high-throughput label-free quantitative proteomics. J Proteome Res (2013) 1.39
A tandem mass spectrometric approach to determination of chondroitin/dermatan sulfate oligosaccharide glycoforms. Glycobiology (2006) 1.38
Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. J Cell Biol (2004) 1.38
Structural heterogeneity and environmentally regulated remodeling of Francisella tularensis subspecies novicida lipid A characterized by tandem mass spectrometry. J Am Soc Mass Spectrom (2007) 1.37
Xwalk: computing and visualizing distances in cross-linking experiments. Bioinformatics (2011) 1.37
Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis. Pancreas (2007) 1.35
A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry. Proteomics (2007) 1.31
A Review of Tandem Mass Spectrometry Characterization of Adenosine Diphosphate-Ribosylated Peptides. Int J Mass Spectrom (2011) 1.29
Rules governing protein identification by mass spectrometry. Rapid Commun Mass Spectrom (2005) 1.29
Analysis of alpha-synuclein-associated proteins by quantitative proteomics. J Biol Chem (2004) 1.27
Tissue fibrocytes in patients with mild asthma: a possible link to thickness of reticular basement membrane? Respir Res (2006) 1.25
Quantitative proteomic profiling of pancreatic cancer juice. Proteomics (2006) 1.25
Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics (2008) 1.23
Multiplexed and data-independent tandem mass spectrometry for global proteome profiling. Mass Spectrom Rev (2013) 1.23
xComb: a cross-linked peptide database approach to protein-protein interaction analysis. J Proteome Res (2010) 1.22
Genetically distinct pathways guide effector export through the type VI secretion system. Mol Microbiol (2014) 1.20
Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach. Proc Natl Acad Sci U S A (2008) 1.18
Cross-link guided molecular modeling with ROSETTA. PLoS One (2013) 1.18
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Mol Cell Proteomics (2007) 1.18
MglA regulates Francisella tularensis subsp. novicida (Francisella novicida) response to starvation and oxidative stress. J Bacteriol (2007) 1.17
Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. Proteins (2005) 1.17
On the benefits of acquiring peptide fragment ions at high measured mass accuracy. J Am Soc Mass Spectrom (2008) 1.17
Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury. Am J Pathol (2006) 1.16
Biosynthesis of dermatan sulfate: chondroitin-glucuronate C5-epimerase is identical to SART2. J Biol Chem (2006) 1.15
Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis. J Biol Chem (2006) 1.15
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol Cell Proteomics (2003) 1.15
Improving mass and liquid chromatography based identification of proteins using bayesian scoring. J Proteome Res (2005) 1.14
Precursor ion independent algorithm for top-down shotgun proteomics. J Am Soc Mass Spectrom (2009) 1.14
Stromal mesenchyme cell genes of the human prostate and bladder. BMC Urol (2005) 1.13
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. J Bacteriol (2003) 1.13
Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. J Proteome Res (2013) 1.11
Faster, quantitative, and accurate precursor acquisition independent from ion count. Anal Chem (2011) 1.11
Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs. J Proteome Res (2010) 1.09
Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Res (2004) 1.09
System-based proteomic analysis of the interferon response in human liver cells. Genome Biol (2004) 1.09
Identification and type III-dependent secretion of the Yersinia pestis insecticidal-like proteins. Mol Microbiol (2007) 1.09
Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes. Nat Commun (2012) 1.09
Interactions between CusF and CusB identified by NMR spectroscopy and chemical cross-linking coupled to mass spectrometry. Biochemistry (2011) 1.08
Plasticity of cytochrome P450 2B4 as investigated by hydrogen-deuterium exchange mass spectrometry and X-ray crystallography. J Biol Chem (2010) 1.08
Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis (2009) 1.08
Lack of L-iduronic acid in heparan sulfate affects interaction with growth factors and cell signaling. J Biol Chem (2009) 1.07
A cryptic targeting signal induces isoform-specific localization of p46Shc to mitochondria. J Biol Chem (2003) 1.06
Quantitative proteomic analysis of chromatin-associated factors. J Am Soc Mass Spectrom (2003) 1.06
Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study. J Proteome Res (2012) 1.06
Presence of activated mobile fibroblasts in bronchoalveolar lavage from patients with mild asthma. Am J Respir Crit Care Med (2004) 1.05
Dermatan sulfate epimerase 1-deficient mice have reduced content and changed distribution of iduronic acids in dermatan sulfate and an altered collagen structure in skin. Mol Cell Biol (2009) 1.05
Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress. J Biol Chem (2009) 1.04
Transferrin receptor-dependent cytotoxicity of artemisinin-transferrin conjugates on prostate cancer cells and induction of apoptosis. Cancer Lett (2008) 1.04
Iduronic acid in chondroitin/dermatan sulfate: biosynthesis and biological function. J Histochem Cytochem (2012) 1.04
Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method. Cancer Inform (2008) 1.02
Proteomic analysis of the intestinal epithelial cell response to enteropathogenic Escherichia coli. J Biol Chem (2004) 1.02