PubRank

Stefan Schuster

Author PubWeight™ 88.33‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Metabolic network structure determines key aspects of functionality and regulation. Nature 2002 6.64
2 Comparison of network-based pathway analysis methods. Trends Biotechnol 2004 2.78
3 Comparison of various approaches to calculating the optimal hematocrit in vertebrates. J Appl Physiol (1985) 2012 2.15
4 Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics 2006 2.12
5 Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol Bioeng 2002 1.74
6 Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics 2009 1.54
7 Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics 2009 1.53
8 Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics 2008 1.51
9 Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs. Mol Syst Biol 2011 1.45
10 Game-theoretical approaches to studying the evolution of biochemical systems. Trends Biochem Sci 2005 1.36
11 Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns. Genome Res 2009 1.36
12 Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics 2007 1.32
13 YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics 2005 1.24
14 Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. Nat Chem Biol 2013 1.23
15 In silico evidence for gluconeogenesis from fatty acids in humans. PLoS Comput Biol 2011 1.18
16 Structural robustness of metabolic networks with respect to multiple knockouts. J Theor Biol 2007 1.11
17 The predictive start of hunting archer fish: a flexible and precise motor pattern performed with the kinematics of an escape C-start. J Exp Biol 2007 1.11
18 Predicting three-dimensional target motion: how archer fish determine where to catch their dislodged prey. J Exp Biol 2002 1.08
19 Topological analysis of metabolic networks based on Petri net theory. In Silico Biol 2003 1.08
20 Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks. Curr Opin Biotechnol 2010 1.04
21 Modeling and performance analysis of SAW reader systems for delay-line sensors. IEEE Trans Ultrason Ferroelectr Freq Control 2009 1.04
22 Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst Biol 2010 1.02
23 Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section. Biosystems 2010 1.00
24 Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi. Front Microbiol 2012 0.99
25 Fruit-catching fish tune their fast starts to compensate for drift. Curr Biol 2008 0.97
26 TassDB: a database of alternative tandem splice sites. Nucleic Acids Res 2006 0.97
27 Small circuits for large tasks: high-speed decision-making in archerfish. Science 2008 0.96
28 TassDB2 - A comprehensive database of subtle alternative splicing events. BMC Bioinformatics 2010 0.93
29 Can single knockouts accurately single out gene functions? BMC Syst Biol 2008 0.93
30 Evolutionary game theory: cells as players. Mol Biosyst 2014 0.93
31 Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth. J Biol Chem 2011 0.91
32 Metabolic costs of amino acid and protein production in Escherichia coli. Biotechnol J 2013 0.91
33 A method for classifying metabolites in topological pathway analyses based on minimization of pathway number. Biosystems 2003 0.91
34 Photonic crystal light collectors in fish retina improve vision in turbid water. Science 2012 0.89
35 Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations. FEBS Lett 2005 0.89
36 Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study. DNA Res 2013 0.89
37 More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst Biol 2011 0.88
38 Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts. PLoS One 2012 0.88
39 Hunting archer fish match their take-off speed to distance from the future point of catch. J Exp Biol 2006 0.88
40 Comparative analysis of sequence features involved in the recognition of tandem splice sites. BMC Genomics 2008 0.88
41 Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism. Gene 2007 0.86
42 An example of the prisoner's dilemma in biochemistry. Naturwissenschaften 2003 0.86
43 Highly potent 5-aminotetrahydropyrazolopyridines: enantioselective dopamine D3 receptor binding, functional selectivity, and analysis of receptor-ligand interactions. J Med Chem 2011 0.86
44 NAD(+) biosynthesis and salvage--a phylogenetic perspective. FEBS J 2012 0.86
45 Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. Nat Commun 2013 0.86
46 Selection of human tissue-specific elementary flux modes using gene expression data. Bioinformatics 2013 0.85
47 Alternative splicing of mutually exclusive exons--a review. Biosystems 2013 0.85
48 Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus. PLoS Comput Biol 2012 0.84
49 Pathway analysis of NAD+ metabolism. Biochem J 2011 0.84
50 Detecting and investigating substrate cycles in a genome-scale human metabolic network. FEBS J 2012 0.84
51 Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data. J Biol Chem 2013 0.83
52 A minimal model for decoding of time-limited Ca2+ oscillations. Biophys Chem 2005 0.82
53 Continuous model for the rock-scissors-paper game between bacteriocin producing bacteria. J Math Biol 2007 0.82
54 Visual search in hunting archerfish shares all hallmarks of human performance. J Exp Biol 2013 0.81
55 Effect of substrate competition in kinetic models of metabolic networks. FEBS Lett 2013 0.81
56 A theory of optimal differential gene expression. Biosystems 2004 0.81
57 Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete Mucor mucedo. J Theor Biol 2012 0.80
58 Topological analysis of metabolic networks based on petri net theory. Stud Health Technol Inform 2011 0.80
59 Commemorating the 1913 Michaelis-Menten paper Die Kinetik der Invertinwirkung: three perspectives. FEBS J 2013 0.80
60 Modeling signal transduction in enzyme cascades with the concept of elementary flux modes. J Comput Biol 2009 0.80
61 Evolutionary game theory: molecules as players. Mol Biosyst 2014 0.79
62 Theoretical model of the interactions between Ca2+, calmodulin and myosin light chain kinase. FEBS Lett 2005 0.79
63 Under what conditions signal transduction pathways are highly flexible in response to external forcing? A case study on calcium oscillations. J Theor Biol 2003 0.79
64 Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis. FEBS J 2010 0.79
65 Detecting structural invariants in biological reaction networks. Methods Mol Biol 2012 0.78
66 Dim light vision--morphological and functional adaptations of the eye of the mormyrid fish, Gnathonemus petersii. J Physiol Paris 2008 0.78
67 Biochemical frequency control by synchronisation of coupled repressilators: an in silico study of modules for circadian clock systems. Comput Intell Neurosci 2011 0.78
68 Exhaustive analysis of the modular structure of the spliceosomal assembly network: a Petri net approach. In Silico Biol 2010 0.78
69 Calculating as many fluxes as possible in underdetermined metabolic networks. Mol Biol Rep 2002 0.77
70 Combinatorics of aliphatic amino acids. Naturwissenschaften 2010 0.77
71 Hands-on metabolism analysis of complex biochemical networks using elementary flux modes. Methods Enzymol 2011 0.77
72 Archerfish shots are evolutionarily matched to prey adhesion. Curr Biol 2006 0.77
73 Precision of archerfish C-starts is fully temperature compensated. J Exp Biol 2013 0.77
74 Quantification of the interaction between biomaterial surfaces and bacteria by 3-D modeling. Acta Biomater 2013 0.77
75 GC content dependency of open reading frame prediction via stop codon frequencies. Gene 2012 0.76
76 Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics 2009 0.76
77 Jensen's inequality as a tool for explaining the effect of oscillations on the average cytosolic calcium concentration. Theory Biosci 2010 0.76
78 Special issue: integration of OMICs datasets into metabolic pathway analysis. Biosystems 2011 0.76
79 Dynamic modeling of cooperative protein secretion in microorganism populations. Theor Popul Biol 2011 0.76
80 Revisiting the thermodynamic theory of optimal ATP stoichiometries by analysis of various ATP-producing metabolic pathways. J Mol Evol 2010 0.76
81 Exhaustive analysis of the modular structure of the spliceosomal assembly network: a petri net approach. Stud Health Technol Inform 2011 0.76
82 Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions. Int J Circumpolar Health 2012 0.75
83 Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii. PLoS One 2011 0.75
84 Discrimination between random and non-random processes in early bacterial colonization on biomaterial surfaces: application of point pattern analysis. Biofouling 2014 0.75
85 Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii. J Biol Phys 2012 0.75
86 Identification of SAW ID-tags using an FSCW interrogation unit and model-based evaluation. IEEE Trans Ultrason Ferroelectr Freq Control 2004 0.75
87 Equality of average and steady-state levels in some nonlinear models of biological oscillations. Theory Biosci 2008 0.75
88 On the evolutionary significance of the size and planarity of the proline ring. Naturwissenschaften 2012 0.75