Published in BMC Evol Biol on January 25, 2009
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res (2010) 2.50
A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea. BMC Evol Biol (2011) 1.74
Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness. Nature (2010) 1.49
Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae). BMC Evol Biol (2009) 1.22
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One (2011) 1.17
Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evol Biol (2011) 1.07
Molecular evolution of dentin phosphoprotein among toothed and toothless animals. BMC Evol Biol (2009) 0.98
Fossil dolphin Otekaikea marplesi (latest Oligocene, New Zealand) expands the morphological and taxonomic diversity of Oligocene cetaceans. PLoS One (2014) 0.98
A new species of river dolphin from Brazil or: how little do we know our biodiversity. PLoS One (2014) 0.91
The occurrence of mtDNA heteroplasmy in multiple cetacean species. Curr Genet (2011) 0.84
Adaptive evolution and functional constraint at TLR4 during the secondary aquatic adaptation and diversification of cetaceans. BMC Evol Biol (2012) 0.84
Characterization of hairless (Hr) and FGF5 genes provides insights into the molecular basis of hair loss in cetaceans. BMC Evol Biol (2013) 0.83
Whale phylogeny and rapid radiation events revealed using novel retroposed elements and their flanking sequences. BMC Evol Biol (2011) 0.79
The loss of taste genes in cetaceans. BMC Evol Biol (2014) 0.79
Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)? BMC Evol Biol (2016) 0.78
Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans. Philos Trans R Soc Lond B Biol Sci (2016) 0.77
Sequence polymorphism and evolution of three cetacean MHC genes. J Mol Evol (2009) 0.77
Back to Water: Signature of Adaptive Evolution in Cetacean Mitochondrial tRNAs. PLoS One (2016) 0.76
Initial Evidence for Adaptive Selection on the NADH Subunit Two of Freshwater Dolphins by Analyses of Mitochondrial Genomes. PLoS One (2015) 0.76
Improving evolutionary models for mitochondrial protein data with site-class specific amino acid exchangeability matrices. PLoS One (2013) 0.75
Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins. PLoS One (2011) 0.75
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
Relaxed phylogenetics and dating with confidence. PLoS Biol (2006) 37.68
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Mol Biol Evol (1997) 8.66
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics (2007) 8.63
Bayesian phylogenetic analysis of combined data. Syst Biol (2004) 6.89
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol (2005) 6.77
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst Biol (2004) 5.01
Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol (1996) 4.95
Potential applications and pitfalls of Bayesian inference of phylogeny. Syst Biol (2002) 4.66
Chronology of fluctuating sea levels since the triassic. Science (1987) 4.43
Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst Biol (2005) 3.14
Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst Biol (2001) 2.62
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales. Proc Natl Acad Sci U S A (1999) 2.24
Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins. Proc Natl Acad Sci U S A (2001) 2.11
Skeletons of terrestrial cetaceans and the relationship of whales to artiodactyls. Nature (2001) 1.98
A small polyadenylated RNA (7 S RNA), containing a putative ribosome attachment site, maps near the origin of human mitochondrial DNA replication. J Mol Biol (1981) 1.71
Large temperature drop across the Eocene-Oligocene transition in central North America. Nature (2007) 1.70
Molecular phylogeny of cetaceans prompts revision of morphological transformations. Trends Ecol Evol (1995) 1.66
Morphology, molecules, and the phylogenetics of cetaceans. Syst Biol (1998) 1.60
Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards. Syst Biol (2004) 1.58
Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages. Proc Natl Acad Sci U S A (2000) 1.56
Phylogeny of mysticete whales based on mitochondrial and nuclear data. Mol Phylogenet Evol (2004) 1.52
Evidence from milk casein genes that cetaceans are close relatives of hippopotamid artiodactyls. Mol Biol Evol (1996) 1.48
Mitochondrial phylogenetics and evolution of mysticete whales. Syst Biol (2005) 1.44
Cytochrome b nucleotide sequences and the identification of five primary lineages of extant cetaceans. Mol Biol Evol (1996) 1.41
The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates. J Mol Evol (2000) 1.40
Birds in a bush: five genes indicate explosive evolution of avian orders. Evolution (2004) 1.38
Evolution of river dolphins. Proc Biol Sci (2001) 1.36
Mitogenomic analyses provide new insights into cetacean origin and evolution. Gene (2004) 1.34
Eocene/Oligocene ocean de-acidification linked to Antarctic glaciation by sea-level fall. Nature (2008) 1.30
The position of Hippopotamidae within Cetartiodactyla. Proc Natl Acad Sci U S A (2005) 1.26
Stability of cladistic relationships between Cetacea and higher-level artiodactyl taxa. Syst Biol (1999) 1.24
Cytochrome b and Bayesian inference of whale phylogeny. Mol Phylogenet Evol (2005) 1.22
Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae. Mol Phylogenet Evol (2007) 1.17
The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Mol Biol Evol (1995) 1.13
Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature. J Mol Evol (1993) 1.13
Mining the mammalian genome for artiodactyl systematics. Syst Biol (2001) 1.12
More DNA support for a Cetacea/Hippopotamidae clade: the blood-clotting protein gene gamma-fibrinogen. Mol Biol Evol (1997) 1.12
Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade. Proc Biol Sci (1998) 1.11
Mitochondrial DNA analysis of sympatric morphotypes of bottlenose dolphins (genus: Tursiops) in Chinese waters. Mol Ecol (1999) 1.05
Relationship of baleen whales established by cytochrome b gene sequence comparison. Nature (1994) 1.00
Molecular phylogenetic examination of the delphinoidea trichotomy: congruent evidence from three nuclear loci indicates that porpoises (Phocoenidae) share a more recent common ancestry with white whales (Monodontidae) than they do with true dolphins (Delphinidae). Mol Phylogenet Evol (2000) 0.97
Toothed whale monophyly reassessed by SINE insertion analysis: the absence of lineage sorting effects suggests a small population of a common ancestral species. Mol Phylogenet Evol (2006) 0.95
Consistency of SINE insertion topology and flanking sequence tree: quantifying relationships among cetartiodactyls. Mol Biol Evol (2000) 0.89
Molecular phylogenetics of 'river dolphins' and the baiji mitochondrial genome. Mol Phylogenet Evol (2005) 0.89
Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution. BMC Evol Biol (2006) 0.87
Phylogenetic relationships among cetaceans revealed by Y-chromosome sequences. Zoolog Sci (2007) 0.85
Phylogenetic position of Platanista gangetica: insights from the mitochondrial cytochrome b and nuclear interphotoreceptor retinoid-binding protein gene sequences. Mol Phylogenet Evol (2004) 0.81
ATP mediates rapid microglial response to local brain injury in vivo. Nat Neurosci (2005) 11.55
Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature (2013) 5.35
The P2Y12 receptor regulates microglial activation by extracellular nucleotides. Nat Neurosci (2006) 4.93
MYD88 L265P somatic mutation in Waldenström's macroglobulinemia. N Engl J Med (2012) 4.26
Choice of cranial window type for in vivo imaging affects dendritic spine turnover in the cortex. Nat Neurosci (2007) 3.92
Genetic interaction between NRAS and BRAF mutations and PTEN/MMAC1 inactivation in melanoma. J Invest Dermatol (2004) 3.80
Long-term sensory deprivation prevents dendritic spine loss in primary somatosensory cortex. Nature (2005) 3.41
High levels of phosphorylated form of Akt-1 in prostate cancer and non-neoplastic prostate tissues are strong predictors of biochemical recurrence. Clin Cancer Res (2004) 2.75
A Smac mimetic rescue screen reveals roles for inhibitor of apoptosis proteins in tumor necrosis factor-alpha signaling. Cancer Res (2007) 2.52
Transforming growth factor-beta-regulated miR-24 promotes skeletal muscle differentiation. Nucleic Acids Res (2008) 2.44
Bruton tyrosine kinase inhibition is a novel therapeutic strategy targeting tumor in the bone marrow microenvironment in multiple myeloma. Blood (2012) 2.29
Conservation options for the Baiji: time for realism? Conserv Biol (2006) 2.25
Defective neuromuscular synapses in mice lacking amyloid precursor protein (APP) and APP-Like protein 2. J Neurosci (2005) 2.21
A heterozygous moth genome provides insights into herbivory and detoxification. Nat Genet (2013) 2.13
Heme oxygenase-1 protein localizes to the nucleus and activates transcription factors important in oxidative stress. J Biol Chem (2007) 2.08
Ibrutinib in previously treated Waldenström's macroglobulinemia. N Engl J Med (2015) 2.04
AML1-ETO and C-KIT mutation/overexpression in t(8;21) leukemia: implication in stepwise leukemogenesis and response to Gleevec. Proc Natl Acad Sci U S A (2005) 2.03
Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles. Evolution (2006) 1.98
Altered adipose and plasma sphingolipid metabolism in obesity: a potential mechanism for cardiovascular and metabolic risk. Diabetes (2006) 1.91
Somatic mutations in MYD88 and CXCR4 are determinants of clinical presentation and overall survival in Waldenstrom macroglobulinemia. Blood (2014) 1.89
Design and characterization of a spatially distributed multibeam field emission x-ray source for stationary digital breast tomosynthesis. Med Phys (2009) 1.80
The lectin-like domain of tumor necrosis factor improves lung function after rat lung transplantation--potential role for a reduction in reactive oxygen species generation. Crit Care Med (2010) 1.78
A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea. BMC Evol Biol (2011) 1.74
Single-stranded DNA aptamers that bind differentiated but not parental cells: subtractive systematic evolution of ligands by exponential enrichment. J Biotechnol (2003) 1.67
Herd behavior in a complex adaptive system. Proc Natl Acad Sci U S A (2011) 1.62
High resolution stationary digital breast tomosynthesis using distributed carbon nanotube x-ray source array. Med Phys (2012) 1.58
Protection from high fat diet-induced increase in ceramide in mice lacking plasminogen activator inhibitor 1. J Biol Chem (2008) 1.55
Transient maternal IL-6 mediates long-lasting changes in neural stem cell pools by deregulating an endogenous self-renewal pathway. Cell Stem Cell (2013) 1.55
Dynamic adipocyte phosphoproteome reveals that Akt directly regulates mTORC2. Cell Metab (2013) 1.54
Association between physical activity and urinary incontinence in a community-based elderly population aged 70 years and over. Eur Urol (2007) 1.49
[Effects of Rhaponticum uniforum polysaccharide on immune response of mice after antigen stimulation and their possible mechanisms]. Zhongguo Zhong Yao Za Zhi (2007) 1.44
The mitochondrial phylogeny of an ancient lineage of ray-finned fishes (Polypteridae) with implications for the evolution of body elongation, pelvic fin loss, and craniofacial morphology in Osteichthyes. BMC Evol Biol (2010) 1.39
Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2009-30 September 2009. Mol Ecol Resour (2010) 1.39
IL-17A and TNF-α exert synergistic effects on expression of CXCL5 by alveolar type II cells in vivo and in vitro. J Immunol (2011) 1.37
Tumor cell-secreted caveolin-1 has proangiogenic activities in prostate cancer. Cancer Res (2008) 1.37
Tissue factor-protease-activated receptor 2 signaling promotes diet-induced obesity and adipose inflammation. Nat Med (2011) 1.31
Covalent bulk functionalization of graphene. Nat Chem (2011) 1.28
RTVP-1, a tumor suppressor inactivated by methylation in prostate cancer. Cancer Res (2004) 1.25
Glioma pathogenesis-related protein 1 exerts tumor suppressor activities through proapoptotic reactive oxygen species-c-Jun-NH2 kinase signaling. Cancer Res (2008) 1.24
Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling. EMBO J (2006) 1.22
Transthyretin constitutes a functional component in pancreatic beta-cell stimulus-secretion coupling. Proc Natl Acad Sci U S A (2005) 1.22
Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea). Mol Biol Evol (2011) 1.21
An autoreactive antibody from an SLE/HIV-1 individual broadly neutralizes HIV-1. J Clin Invest (2014) 1.19
Influence of decellularized matrix derived from human mesenchymal stem cells on their proliferation, migration and multi-lineage differentiation potential. Biomaterials (2012) 1.18
Chlamydial CT441 is a PDZ domain-containing tail-specific protease that interferes with the NF-kappaB pathway of immune response. J Bacteriol (2007) 1.17
Disruption of the caveolin-1 gene impairs renal calcium reabsorption and leads to hypercalciuria and urolithiasis. Am J Pathol (2003) 1.16
Haff disease after eating crayfish in east China. Intern Med (2012) 1.16
MicroRNA-200b regulates cyclin D1 expression and promotes S-phase entry by targeting RND3 in HeLa cells. Mol Cell Biochem (2010) 1.15
Agonist of growth hormone-releasing hormone reduces pneumolysin-induced pulmonary permeability edema. Proc Natl Acad Sci U S A (2012) 1.14
Asiatic acid inhibits liver fibrosis by blocking TGF-beta/Smad signaling in vivo and in vitro. PLoS One (2012) 1.14
N-(3,3a,4,4a,5,5a,6,6a-Octahydro-1,3-dioxo-4,6- ethenocycloprop[f]isoindol-2-(1H)-yl)carboxamides: Identification of novel orthopoxvirus egress inhibitors. J Med Chem (2007) 1.13
Risk-return relationship in a complex adaptive system. PLoS One (2012) 1.13
Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the laurasiatherian mammals. Syst Biol (2011) 1.12
Lack of association of two common polymorphisms rs2910164 and rs11614913 with susceptibility to hepatocellular carcinoma: a meta-analysis. PLoS One (2012) 1.12
Delay in initiation and termination of muscle contraction, motor impairment, and physical disability in upper limb hemiparesis. Muscle Nerve (2002) 1.12
Identification of testis development and spermatogenesis-related genes in human and mouse testes using cDNA arrays. Mol Hum Reprod (2002) 1.12
Developmental and insecticide-resistant insights from the de novo assembled transcriptome of the diamondback moth, Plutella xylostella. Genomics (2012) 1.11
Muscle weakness and cocontraction in upper limb hemiparesis: relationship to motor impairment and physical disability. Neurorehabil Neural Repair (2002) 1.11
Boom and bust: ancient and recent diversification in bichirs (Polypteridae: Actinopterygii), a relictual lineage of ray-finned fishes. Evolution (2014) 1.10
Hfq is a global regulator that controls the pathogenicity of Staphylococcus aureus. PLoS One (2010) 1.09
VCP/p97, down-regulated by microRNA-129-5p, could regulate the progression of hepatocellular carcinoma. PLoS One (2012) 1.08
When a case is not a case: effects of phenotype misclassification on power and sample size requirements for the transmission disequilibrium test with affected child trios. Hum Hered (2009) 1.08
Malonyl coenzyme a decarboxylase inhibition protects the ischemic heart by inhibiting fatty acid oxidation and stimulating glucose oxidation. Circ Res (2004) 1.08
Adenoviral vector-mediated mRTVP-1 gene therapy for prostate cancer. Hum Gene Ther (2003) 1.08
Down-regulation of BMI-1 cooperates with artemisinin on growth inhibition of nasopharyngeal carcinoma cells. J Cell Biochem (2011) 1.08
Curcumin induces apoptosis through mitochondrial hyperpolarization and mtDNA damage in human hepatoma G2 cells. Free Radic Biol Med (2007) 1.08
Vibrational spectra of copper sulfate hydrates investigated with low-temperature Raman spectroscopy and terahertz time domain spectroscopy. J Phys Chem A (2012) 1.07
Nuclear factor-kappaB activation in neonatal mouse lung protects against lipopolysaccharide-induced inflammation. Am J Respir Crit Care Med (2007) 1.07
Highly potent inhibitors of methionine aminopeptidase-2 based on a 1,2,4-triazole pharmacophore. J Med Chem (2007) 1.06
A review of organic and inorganic biomaterials for neural interfaces. Adv Mater (2014) 1.05
Effects of IL-6 and AG490 on regulation of Stat3 signaling pathway and invasion of human pancreatic cancer cells in vitro. J Exp Clin Cancer Res (2010) 1.05
Converting stem cells to dendritic cells by agonist antibodies from unbiased morphogenic selections. Proc Natl Acad Sci U S A (2013) 1.05
Aberrant splicing of Hugl-1 is associated with hepatocellular carcinoma progression. Clin Cancer Res (2009) 1.04
The lectin-like domain of TNF protects from listeriolysin-induced hyperpermeability in human pulmonary microvascular endothelial cells - a crucial role for protein kinase C-alpha inhibition. Vascul Pharmacol (2010) 1.04
Identification of an aptamer targeting hnRNP A1 by tissue slide-based SELEX. J Pathol (2009) 1.04
Vaccinia virus p37 interacts with host proteins associated with LE-derived transport vesicle biogenesis. Virol J (2009) 1.03
Resistance to hyperoxia with heme oxygenase-1 disruption: role of iron. Free Radic Biol Med (2003) 1.02
Phylogeography and demographic history of Chinese black-spotted frog populations (Pelophylax nigromaculata): evidence for independent refugia expansion and secondary contact. BMC Evol Biol (2008) 1.02
DBM-DB: the diamondback moth genome database. Database (Oxford) (2014) 1.02
The vaccinia virus F13L YPPL motif is required for efficient release of extracellular enveloped virus. J Virol (2007) 1.02
Abnormal mitoferrin-1 expression in patients with erythropoietic protoporphyria. Exp Hematol (2011) 1.01
Differential expression of Axl in hepatocellular carcinoma and correlation with tumor lymphatic metastasis. Mol Carcinog (2010) 1.01
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat Commun (2013) 1.01
Distribution and conservation of the Indo-Pacific humpback dolphin in China. Integr Zool (2009) 1.01
Multi-stimulus-responsive shape-memory polymer nanocomposite network cross-linked by cellulose nanocrystals. ACS Appl Mater Interfaces (2015) 1.01
Loss of caveolin-1 expression is associated with disruption of muscarinic cholinergic activities in the urinary bladder. Neurochem Int (2004) 1.01
Application of visible light-based projection stereolithography for live cell-scaffold fabrication with designed architecture. Biomaterials (2012) 1.00
Cell polarity protein Par3 complexes with DNA-PK via Ku70 and regulates DNA double-strand break repair. Cell Res (2007) 1.00
Earlier onset of motor deficits in mice with double mutations in Dyt1 and Sgce. J Biochem (2010) 1.00
Computed tomography-based Three-Column Classification in tibial plateau fractures: introduction of its utility and assessment of its reproducibility. J Trauma Acute Care Surg (2012) 1.00
Liposomal honokiol, a potent anti-angiogenesis agent, in combination with radiotherapy produces a synergistic antitumor efficacy without increasing toxicity. Exp Mol Med (2008) 1.00
The phylogenetic position of the zokors (Myospalacinae) and comments on the families of muroids (Rodentia). Mol Phylogenet Evol (2004) 0.99