TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II.

PubWeight™: 0.85‹?›

🔗 View Article (PMC 2666558)

Published in J Biol Chem on February 04, 2009

Authors

Benjamin Gilman1, Linda F Drullinger, Jennifer F Kugel, James A Goodrich

Author Affiliations

1: Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, USA.

Articles cited by this

The RNA polymerase II core promoter. Annu Rev Biochem (2003) 9.37

Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem (2006) 8.66

The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol (2006) 5.52

Transcriptional coactivator complexes. Annu Rev Biochem (2001) 3.97

Recycling of the general transcription factors during RNA polymerase II transcription. Genes Dev (1995) 3.88

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell (2004) 3.82

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell (1993) 3.77

Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell (1994) 3.61

Nucleosome displacement in transcription. Genes Dev (2006) 3.16

Mechanism of ATP-dependent promoter melting by transcription factor IIH. Science (2000) 2.62

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J Biol Chem (2000) 2.35

The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol Cell (2005) 2.31

Three transitions in the RNA polymerase II transcription complex during initiation. EMBO J (1997) 2.27

Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J (1996) 2.13

Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site. J Biol Chem (1994) 1.78

Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter. J Biol Chem (1987) 1.69

Promoter escape by RNA polymerase II. Biochim Biophys Acta (2002) 1.65

TFIIB and the regulation of transcription by RNA polymerase II. Chromosoma (2007) 1.53

Promoter escape limits the rate of RNA polymerase II transcription and is enhanced by TFIIE, TFIIH, and ATP on negatively supercoiled DNA. Proc Natl Acad Sci U S A (1998) 1.19

Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA. Mol Cell Biol (2002) 1.12

The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro. J Biol Chem (2005) 1.08

Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape. Mol Cell Biol (2002) 1.07

The initiation-elongation transition: lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23. Proc Natl Acad Sci U S A (2003) 1.03

Initially transcribed sequences strongly affect the extent of abortive initiation by RNA polymerase II. J Biol Chem (1999) 1.00

A kinetic model for the early steps of RNA synthesis by human RNA polymerase II. J Biol Chem (2000) 0.97

An 8 nt RNA triggers a rate-limiting shift of RNA polymerase II complexes into elongation. EMBO J (2006) 0.90

Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter. J Biol Chem (1991) 0.87

Articles by these authors

Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell (2008) 4.24

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration. Nature (2011) 3.90

Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II. Nat Cell Biol (2004) 3.43

DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88. Cell (2012) 2.81

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock. Nat Struct Mol Biol (2004) 2.71

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat Struct Mol Biol (2004) 2.59

XPB, a subunit of TFIIH, is a target of the natural product triptolide. Nat Chem Biol (2011) 1.89

Non-coding-RNA regulators of RNA polymerase II transcription. Nat Rev Mol Cell Biol (2006) 1.70

RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA. EMBO J (2013) 1.68

B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes. Proc Natl Acad Sci U S A (2009) 1.65

Phosphatase inhibition leads to histone deacetylases 1 and 2 phosphorylation and disruption of corepressor interactions. J Biol Chem (2002) 1.52

Genomic gems: SINE RNAs regulate mRNA production. Curr Opin Genet Dev (2010) 1.39

Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. RNA (2007) 1.34

InvAluable junk: the cellular impact and function of Alu and B2 RNAs. IUBMB Life (2009) 1.24

From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription. Crit Rev Biochem Mol Biol (2009) 1.23

Non-coding RNAs: key regulators of mammalian transcription. Trends Biochem Sci (2012) 1.17

Protein-protein interaction assays: eliminating false positive interactions. Nat Methods (2006) 1.10

The basic leucine zipper domain of c-Jun functions in transcriptional activation through interaction with the N terminus of human TATA-binding protein-associated factor-1 (human TAF(II)250). J Biol Chem (2004) 1.08

The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro. J Biol Chem (2005) 1.08

Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape. Mol Cell Biol (2002) 1.07

TFIIF facilitates dissociation of RNA polymerase II from noncoding RNAs that lack a repression domain. Mol Cell Biol (2010) 1.03

TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability. J Mol Biol (2007) 1.00

Real-time contaminant detection and classification in a drinking water pipe using conventional water quality sensors: techniques and experimental results. J Environ Manage (2009) 1.00

ERK1/2 activation is a therapeutic target in age-related macular degeneration. Proc Natl Acad Sci U S A (2012) 0.99

Nuclear myosin I is necessary for the formation of the first phosphodiester bond during transcription initiation by RNA polymerase II. J Cell Biochem (2006) 0.99

Promoter scanning for transcription inhibition with DNA-binding polyamides. Mol Cell Biol (2002) 0.96

Structural insights into transcriptional repression by noncoding RNAs that bind to human Pol II. J Mol Biol (2012) 0.93

An 8 nt RNA triggers a rate-limiting shift of RNA polymerase II complexes into elongation. EMBO J (2006) 0.90

An RNA transcriptional regulator templates its own regulatory RNA. Nat Chem Biol (2007) 0.88

RNA polymerase II and TAFs undergo a slow isomerization after the polymerase is recruited to promoter-bound TFIID. J Mol Biol (2010) 0.88

Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics. Biochemistry (2012) 0.87

Characterization of the sequence and architectural constraints of the regulatory and core regions of the human interleukin-2 promoter. Mol Immunol (2007) 0.86

B2 RNA represses TFIIH phosphorylation of RNA polymerase II. Transcription (2012) 0.84

The C-terminal region of human NFATc2 binds cJun to synergistically activate interleukin-2 transcription. Mol Immunol (2010) 0.83

The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II. J Mol Biol (2013) 0.83

NFATc2 recruits cJun homodimers to an NFAT site to synergistically activate interleukin-2 transcription. Mol Immunol (2013) 0.83

The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts. Epigenomics (2013) 0.83

In vitro studies of the early steps of RNA synthesis by human RNA polymerase II. Methods Enzymol (2003) 0.81

Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system. Methods Mol Biol (2013) 0.80

Beating the heat: A translation factor and an RNA mobilize the heat shock transcription factor HSF1. Mol Cell (2006) 0.80

Dampening DNA binding: a common mechanism of transcriptional repression for both ncRNAs and protein domains. RNA Biol (2010) 0.80

Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4-p53 binding DNA as a model system. Biochem Mol Biol Educ (2012) 0.78

In new company: U1 snRNA associates with TAF15. EMBO Rep (2009) 0.76

Modeling and testing of reactive contaminant transport in drinking water pipes: chlorine response and implications for online contaminant detection. Water Res (2007) 0.75

Single molecule studies of RNA polymerase II transcription in vitro. Transcription (2014) 0.75

A new twist on cell growth control. Cell Cycle (2014) 0.75

Studying the affinity, kinetic stability, and specificity of RNA/protein interactions: SINE ncRNA/Pol II complexes as a model system. Methods Mol Biol (2015) 0.75

Genome-wide insights into eukaryotic transcriptional control. Genome Biol (2010) 0.75

Development of the Metropolitan Water Availability Index (MWAI) and short-term assessment with multi-scale remote sensing technologies. J Environ Manage (2010) 0.75