Published in Trends Plant Sci on February 18, 2009
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Evolutionary history of GS3, a gene conferring grain length in rice. Genetics (2009) 2.33
Diversity of global rice markets and the science required for consumer-targeted rice breeding. PLoS One (2014) 1.66
The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A (2009) 1.61
NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proc Natl Acad Sci U S A (2013) 1.42
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol (2010) 1.41
Neglecting rice milling yield and quality underestimates economic losses from high-temperature stress. PLoS One (2013) 1.27
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Boosting crop yields with plant steroids. Plant Cell (2012) 1.26
Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Sci Rep (2014) 1.08
OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm. J Exp Bot (2013) 1.04
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Biofortification and bioavailability of rice grain zinc as affected by different forms of foliar zinc fertilization. PLoS One (2012) 0.95
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A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight. BMC Plant Biol (2015) 0.94
Designing climate-resilient rice with ideal grain quality suited for high-temperature stress. J Exp Bot (2015) 0.93
Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly. BMC Plant Biol (2014) 0.90
Characterization and expression patterns of microRNAs involved in rice grain filling. PLoS One (2013) 0.90
Analysis of metal element distributions in rice (Oryza sativa L.) seeds and relocation during germination based on X-ray fluorescence imaging of Zn, Fe, K, Ca, and Mn. PLoS One (2013) 0.87
OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice. Nat Commun (2014) 0.87
Phenotypic characters of rice landraces reveal independent lineages of short-grain aromatic indica rice. AoB Plants (2013) 0.85
Proteomics of rice in response to heat stress and advances in genetic engineering for heat tolerance in rice. Plant Cell Rep (2011) 0.85
Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea). Rice (N Y) (2014) 0.83
Comparative mapping of chalkiness components in rice using five populations across two environments. BMC Genet (2014) 0.83
Supplementation of 2-Ap, Zn and La Improves 2-Acetyl-1-Pyrroline Concentrations in Detached Aromatic Rice Panicles In Vitro. PLoS One (2016) 0.82
Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice. BMC Plant Biol (2014) 0.82
Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice. PLoS One (2015) 0.82
The Usefulness of Known Genes/Qtls for Grain Quality Traits in an Indica Population of Diverse Breeding Lines Tested using Association Analysis. Rice (N Y) (2015) 0.82
Natural Variations in SLG7 Regulate Grain Shape in Rice. Genetics (2015) 0.81
Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics. Metabolomics (2016) 0.81
Improved yield and Zn accumulation for rice grain by Zn fertilization and optimized water management. J Zhejiang Univ Sci B (2014) 0.81
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Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions. PLoS One (2016) 0.79
Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. BMC Syst Biol (2011) 0.79
Genomic prediction of biological shape: elliptic Fourier analysis and kernel partial least squares (PLS) regression applied to grain shape prediction in rice (Oryza sativa L.). PLoS One (2015) 0.78
Leaf morphology and ultrastructure responses to elevated O3 in transgenic Bt (cry1Ab/cry1Ac) rice and conventional rice under fully open-air field conditions. PLoS One (2013) 0.77
Effects of allelic variations in starch synthesis-related genes on grain quality traits of Korean nonglutinous rice varieties under different temperature conditions. Breed Sci (2014) 0.77
Effect of germinated brown rice extracts on pancreatic lipase, adipogenesis and lipolysis in 3T3-L1 adipocytes. Lipids Health Dis (2014) 0.77
Chalky part differs in chemical composition from translucent part of japonica rice grains as revealed by a notched-belly mutant with white-belly. J Sci Food Agric (2016) 0.77
Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding. PLoS One (2016) 0.76
Fortune telling: metabolic markers of plant performance. Metabolomics (2016) 0.76
Delving deeper into technological innovations to understand differences in rice quality. Rice (N Y) (2015) 0.76
Integrated metabolomics and phytochemical genomics approaches for studies on rice. Gigascience (2016) 0.76
Tools and databases of the KOMICS web portal for preprocessing, mining, and dissemination of metabolomics data. Biomed Res Int (2014) 0.76
Proteome Profile of Starch Granules Purified from Rice (Oryza sativa) Endosperm. PLoS One (2016) 0.75
Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics. Curr Genomics (2016) 0.75
OsKinesin-13A is an active microtubule depolymerase involved in glume length regulation via affecting cell elongation. Sci Rep (2015) 0.75
High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice. Rice (N Y) (2016) 0.75
Metabolomic analysis of pathways related to rice grain chalkiness by a notched-belly mutant with high occurrence of white-belly grains. BMC Plant Biol (2017) 0.75
Review of functional markers for improving cooking, eating, and the nutritional qualities of rice. Front Plant Sci (2015) 0.75
Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos. PLoS One (2017) 0.75
Genetic dissection of grain traits in Yamadanishiki, an excellent sake-brewing rice cultivar. Theor Appl Genet (2017) 0.75
A Multidisciplinary Phenotyping and Genotyping Analysis of a Mapping Population Enables Quality to Be Combined with Yield in Rice. Front Mol Biosci (2017) 0.75
Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice. Plant Biotechnol J (2016) 0.75
Comparison of Structural and Functional Properties of Wheat Starch Under Different Soil Drought Conditions. Sci Rep (2017) 0.75
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
The genetics of plant metabolism. Nat Genet (2006) 4.28
Potential of metabolomics as a functional genomics tool. Trends Plant Sci (2004) 4.10
Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet (2007) 3.83
Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol (2011) 3.50
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nat Protoc (2007) 3.41
An active DNA transposon family in rice. Nature (2003) 3.24
Gramene, a tool for grass genomics. Plant Physiol (2002) 3.14
Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors. Nat Biotechnol (2008) 3.04
A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiol (2005) 2.95
New insights into the history of rice domestication. Trends Genet (2007) 2.88
Gramene database in 2010: updates and extensions. Nucleic Acids Res (2010) 2.70
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics (2003) 2.58
Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genet (2007) 2.45
Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet (2011) 2.34
Plant molecular stress responses face climate change. Trends Plant Sci (2010) 2.04
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol (2006) 2.03
Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet (2004) 1.65
The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome. New Phytol (2005) 1.63
The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol Plant Microbe Interact (2004) 1.62
The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A (2009) 1.61
High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environ (2012) 1.53
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics (2002) 1.51
Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor Appl Genet (2006) 1.46
Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiol (2010) 1.44
A graph-theoretic approach to comparing and integrating genetic, physical and sequence-based maps. Genetics (2003) 1.41
Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics (2004) 1.40
QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome (2004) 1.29
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol (2014) 1.24
Tissue specialization at the metabolite level is perceived during the development of tomato fruit. J Exp Bot (2007) 1.22
A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach. Plant Physiol (2009) 1.21
Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. PLoS Genet (2006) 1.18
Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes. Genetics (2006) 1.17
Sucrose prevents up-regulation of senescence-associated genes in carnation petals. J Exp Bot (2007) 1.17
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinformatics (2010) 1.16
Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross. Theor Appl Genet (2007) 1.15
Tuber on a chip: differential gene expression during potato tuber development. Plant Biotechnol J (2005) 1.15
De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae. Microb Cell Fact (2012) 1.13
Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics (2006) 1.10
Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping. Theor Appl Genet (2009) 1.07
Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. Mol Plant Microbe Interact (2007) 1.02
Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytol (2011) 1.01
Antioxidants in raspberry: on-line analysis links antioxidant activity to a diversity of individual metabolites. J Agric Food Chem (2005) 0.99
Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice. Plant J (2009) 0.99
High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.). Theor Appl Genet (2003) 0.98
How can we use genomics to improve cereals with rice as a reference genome? Plant Mol Biol (2005) 0.98
The effect of industrial food processing on potentially health-beneficial tomato antioxidants. Crit Rev Food Sci Nutr (2010) 0.97
Comparative performance and complementarity of four sampling methods and arthropod preference tests from human and porcine remains at the Forensic Anthropology Center in Knoxville, Tennessee. J Med Entomol (2007) 0.94
Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC-MS. Proteomics (2006) 0.94
Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proc Natl Acad Sci U S A (2014) 0.93
A universal core genetic map for rice. Theor Appl Genet (2009) 0.93
Microbial production of natural raspberry ketone. Biotechnol J (2007) 0.93
Non-smoky glycosyltransferase1 prevents the release of smoky aroma from tomato fruit. Plant Cell (2013) 0.92
Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus. Appl Environ Microbiol (2009) 0.89
Carcass enrichment does not alter decay rates or arthropod community structure: a test of the arthropod saturation hypothesis at the anthropology research facility in Knoxville, Tennessee. J Med Entomol (2003) 0.89
Plant metabolomics and its potential for systems biology research background concepts, technology, and methodology. Methods Enzymol (2011) 0.88
Factors influencing cDNA microarray hybridization on silylated glass slides. Anal Biochem (2002) 0.88
Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance. Proc Natl Acad Sci U S A (2014) 0.87
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics (2011) 0.87
Solid phase micro-extraction GC-MS analysis of natural volatile components in melon and rice. Methods Mol Biol (2012) 0.86
Identification and dietary relevance of antioxidants from raspberry. Biofactors (2005) 0.83
Does carcass enrichment alter community structure of predaceous and parasitic arthropods? A second test of the arthropod saturation hypothesis at the Anthropology Research Facility in Knoxville, Tennessee. J Forensic Sci (2005) 0.80
Investigating the transport dynamics of anthocyanins from unprocessed fruit and processed fruit juice from sour cherry (Prunus cerasus L.) across intestinal epithelial cells. J Agric Food Chem (2013) 0.80
Metabolomic profiling of natural volatiles: headspace trapping: GC-MS. Methods Mol Biol (2007) 0.78
Relative abundance of tree hole-breeding mosquitoes in Boone County, Missouri, USA, with emphasis on the vector potential of Aedes triseriatus for canine heartworm, Dirofilaria immitis (Spirurida: Filariidae). J Am Mosq Control Assoc (2005) 0.78
Changes in polyphenol content during production of grape juice concentrate. Food Chem (2013) 0.78
An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato. Plant J (2014) 0.77
Corrigendum: Open access resources for genome-wide association mapping in rice. Nat Commun (2016) 0.76
Psychogenic parasitosis: a therapeutic challenge. Mo Med (2007) 0.76
Metabolism of carotenoids and apocarotenoids during ripening of raspberry fruit. Biofactors (2008) 0.76
Delving deeper into technological innovations to understand differences in rice quality. Rice (N Y) (2015) 0.76
High-performance liquid chromatography-mass spectrometry analysis of plant metabolites in brassicaceae. Methods Mol Biol (2012) 0.75
Correlation of rutin accumulation with 3-O-glucosyl transferase and phenylalanine ammonia-lyase activities during the ripening of tomato fruit. Plant Foods Hum Nutr (2012) 0.75