Published in Plant Physiol on March 31, 2011
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. Theor Appl Genet (2013) 2.75
A novel image-analysis toolbox enabling quantitative analysis of root system architecture. Plant Physiol (2011) 2.30
RooTrak: automated recovery of three-dimensional plant root architecture in soil from x-ray microcomputed tomography images using visual tracking. Plant Physiol (2011) 2.00
GiA Roots: software for the high throughput analysis of plant root system architecture. BMC Plant Biol (2012) 1.98
Plasticity of the Arabidopsis root system under nutrient deficiencies. Plant Physiol (2013) 1.97
A novel mesh processing based technique for 3D plant analysis. BMC Plant Biol (2012) 1.91
A review of imaging techniques for plant phenotyping. Sensors (Basel) (2014) 1.91
Root traits contributing to plant productivity under drought. Front Plant Sci (2013) 1.61
RootNav: navigating images of complex root architectures. Plant Physiol (2013) 1.61
Phenotyping for drought tolerance of crops in the genomics era. Front Physiol (2012) 1.56
Genotypic recognition and spatial responses by rice roots. Proc Natl Acad Sci U S A (2013) 1.52
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proc Natl Acad Sci U S A (2013) 1.46
Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography. Plant Methods (2013) 1.45
RootAnalyzer: A Cross-Section Image Analysis Tool for Automated Characterization of Root Cells and Tissues. PLoS One (2015) 1.40
Image-based high-throughput field phenotyping of crop roots. Plant Physiol (2014) 1.32
Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat. J Exp Bot (2015) 1.29
Automated recovery of three-dimensional models of plant shoots from multiple color images. Plant Physiol (2014) 1.26
Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping. Plant Physiol (2014) 1.26
Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales. Plant Cell (2012) 1.25
High-throughput computer vision introduces the time axis to a quantitative trait map of a plant growth response. Genetics (2013) 1.22
3D imaging and mechanical modeling of helical buckling in Medicago truncatula plant roots. Proc Natl Acad Sci U S A (2012) 1.19
Matching roots to their environment. Ann Bot (2013) 1.17
The RootChip: an integrated microfluidic chip for plant science. Plant Cell (2011) 1.16
Rhizoslides: paper-based growth system for non-destructive, high throughput phenotyping of root development by means of image analysis. Plant Methods (2014) 1.16
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database (Oxford) (2011) 1.16
High-throughput imaging and analysis of root system architecture in Brachypodium distachyon under differential nutrient availability. Philos Trans R Soc Lond B Biol Sci (2012) 1.14
Advanced phenotyping and phenotype data analysis for the study of plant growth and development. Front Plant Sci (2015) 1.13
Root system markup language: toward a unified root architecture description language. Plant Physiol (2015) 1.10
Analysis of maize (Zea mays L.) seedling roots with the high-throughput image analysis tool ARIA (Automatic Root Image Analysis). PLoS One (2014) 1.08
Getting to the roots of it: Genetic and hormonal control of root architecture. Front Plant Sci (2013) 1.08
An automated field phenotyping pipeline for application in grapevine research. Sensors (Basel) (2015) 1.06
RootGraph: a graphic optimization tool for automated image analysis of plant roots. J Exp Bot (2015) 1.05
High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities. Ann Bot (2012) 1.04
Recovering the dynamics of root growth and development using novel image acquisition and analysis methods. Philos Trans R Soc Lond B Biol Sci (2012) 1.04
Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability. Planta (2014) 1.02
High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama. Plant Physiol (2014) 1.01
Natural genetic variation of root system architecture from Arabidopsis to Brachypodium: towards adaptive value. Philos Trans R Soc Lond B Biol Sci (2012) 1.00
A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes. J Exp Bot (2014) 0.98
High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.). Ann Bot (2016) 0.95
Advanced imaging techniques for the study of plant growth and development. Trends Plant Sci (2014) 0.94
Duplicate and conquer: multiple homologs of PHOSPHORUS-STARVATION TOLERANCE1 enhance phosphorus acquisition and sorghum performance on low-phosphorus soils. Plant Physiol (2014) 0.93
Drought-tolerance of wheat improved by rhizosphere bacteria from harsh environments: enhanced biomass production and reduced emissions of stress volatiles. PLoS One (2014) 0.92
Belowground plant development measured with magnetic resonance imaging (MRI): exploiting the potential for non-invasive trait quantification using sugar beet as a proxy. Front Plant Sci (2014) 0.92
Plant water uptake in drying soils. Plant Physiol (2014) 0.91
Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. Plant Methods (2015) 0.89
An integrated method for quantifying root architecture of field-grown maize. Ann Bot (2014) 0.87
Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture. Plant Physiol (2015) 0.87
A DNA-based method for studying root responses to drought in field-grown wheat genotypes. Sci Rep (2013) 0.87
Root Traits and Phenotyping Strategies for Plant Improvement. Plants (Basel) (2015) 0.86
Emerging paradigms in genomics-based crop improvement. ScientificWorldJournal (2013) 0.86
3D Surface Reconstruction of Plant Seeds by Volume Carving: Performance and Accuracies. Front Plant Sci (2016) 0.86
Objective definition of rosette shape variation using a combined computer vision and data mining approach. PLoS One (2014) 0.86
The roots of future rice harvests. Rice (N Y) (2014) 0.82
X-ray computed tomography uncovers root-root interactions: quantifying spatial relationships between interacting root systems in three dimensions. Front Plant Sci (2015) 0.82
DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots. PLoS One (2015) 0.82
Relationships between root diameter, root length and root branching along lateral roots in adult, field-grown maize. Ann Bot (2016) 0.80
X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture. Plant Physiol (2016) 0.78
A practical introduction to skeletons for the plant sciences. Appl Plant Sci (2014) 0.76
Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012. Funct Integr Genomics (2012) 0.76
RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods (2016) 0.75
An automated, cost-effective and scalable, flood-and-drain based root phenotyping system for cereals. Plant Methods (2016) 0.75
Phenotyping for the dynamics of field wheat root system architecture. Sci Rep (2017) 0.75
Long-Term Growth of Moss in Microfluidic Devices Enables Subcellular Studies in Development. Plant Physiol (2016) 0.75
Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology. Front Plant Sci (2017) 0.75
Cherenkov luminescence imaging in transparent media and the imaging of thin or shallow sources. J Biomed Opt (2015) 0.75
Dynamic quantification of canopy structure to characterize early plant vigour in wheat genotypes. J Exp Bot (2016) 0.75
Fast High Resolution Volume Carving for 3D Plant Shoot Reconstruction. Front Plant Sci (2017) 0.75
Genome-wide association mapping for root cone angle in rice. Rice (N Y) (2017) 0.75
Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography. PLoS One (2017) 0.75
Development of a phenotyping platform for high throughput screening of nodal root angle in sorghum. Plant Methods (2017) 0.75
Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Front Plant Sci (2017) 0.75
Intrinsic and environmental response pathways that regulate root system architecture. Plant Cell Environ (2005) 4.38
Plant phenotypic plasticity in a changing climate. Trends Plant Sci (2010) 4.28
Root system architecture: opportunities and constraints for genetic improvement of crops. Trends Plant Sci (2007) 3.48
Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol (2010) 3.30
Oscillating gene expression determines competence for periodic Arabidopsis root branching. Science (2010) 3.26
From weeds to crops: genetic analysis of root development in cereals. Trends Plant Sci (2004) 2.53
EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture. Plant J (2008) 2.43
The complex history of the domestication of rice. Ann Bot (2007) 2.30
ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J (2005) 2.24
The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography. J Exp Bot (2010) 2.16
Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol (2009) 2.10
The effect of iron on the primary root elongation of Arabidopsis during phosphate deficiency. Plant Physiol (2008) 1.93
Effect of phosphorus availability on basal root shallowness in common bean. Plant Soil (2001) 1.89
Genomics-based approaches to improve drought tolerance of crops. Trends Plant Sci (2006) 1.64
3D reconstruction and dynamic modeling of root architecture in situ and its application to crop phosphorus research. Plant J (2009) 1.57
Spiralizations and tropisms in Arabidopsis roots. Trends Plant Sci (2001) 1.51
Waving and skewing: how gravity and the surface of growth media affect root development in Arabidopsis. New Phytol (2007) 1.46
Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiol (2010) 1.44
Optimization modeling of plant root architecture for water and phosphorus acquisition. J Theor Biol (2004) 1.14
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet (2007) 3.83
Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci U S A (2002) 3.33
An active DNA transposon family in rice. Nature (2003) 3.24
A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nat Genet (2007) 3.19
Gramene, a tool for grass genomics. Plant Physiol (2002) 3.14
New insights into the history of rice domestication. Trends Genet (2007) 2.88
Gramene database in 2010: updates and extensions. Nucleic Acids Res (2010) 2.70
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics (2003) 2.58
Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genet (2007) 2.45
Not just a grain of rice: the quest for quality. Trends Plant Sci (2009) 2.36
Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet (2011) 2.34
AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.33
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol (2006) 2.03
Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance. Plant J (2008) 1.89
Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots. Evidence for cross talk and root/rhizosphere-mediated signals. Plant Physiol (2002) 1.87
The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation. Plant Cell (2006) 1.80
Using membrane transporters to improve crops for sustainable food production. Nature (2013) 1.73
Molecular characterization and mapping of ALMT1, the aluminium-tolerance gene of bread wheat (Triticum aestivum L.). Genome (2005) 1.68
Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet (2004) 1.65
Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc Natl Acad Sci U S A (2013) 1.63
The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol Plant Microbe Interact (2004) 1.62
The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A (2009) 1.61
Aluminum resistance in maize cannot be solely explained by root organic acid exudation. A comparative physiological study. Plant Physiol (2004) 1.61
Identification of Thlaspi caerulescens genes that may be involved in heavy metal hyperaccumulation and tolerance. Characterization of a novel heavy metal transporting ATPase. Plant Physiol (2004) 1.58
High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environ (2012) 1.53
Genotypic recognition and spatial responses by rice roots. Proc Natl Acad Sci U S A (2013) 1.52
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics (2002) 1.51
Retracted High bioavailability iron maize (Zea mays L.) developed through molecular breeding provides more absorbable iron in vitro (Caco-2 model) and in vivo (Gallus gallus). Nutr J (2013) 1.48
Characterization of AtALMT1 expression in aluminum-inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis. Plant Physiol (2007) 1.46
Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor Appl Genet (2006) 1.46
Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiol (2010) 1.44
Phytofiltration of arsenic from drinking water using arsenic-hyperaccumulating ferns. Environ Sci Technol (2004) 1.44
A graph-theoretic approach to comparing and integrating genetic, physical and sequence-based maps. Genetics (2003) 1.41
Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize. Plant J (2009) 1.40
Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics (2004) 1.40
Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait. Plant Physiol (2003) 1.39
The physiology and biophysics of an aluminum tolerance mechanism based on root citrate exudation in maize. Plant Physiol (2002) 1.34
Phosphorus and aluminum interactions in soybean in relation to aluminum tolerance. Exudation of specific organic acids from different regions of the intact root system. Plant Physiol (2006) 1.29
QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome (2004) 1.29
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol (2014) 1.24
Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. PLoS Genet (2006) 1.18
Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes. Genetics (2006) 1.17
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinformatics (2010) 1.16
Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross. Theor Appl Genet (2007) 1.15
Transcriptional profiling of aluminum toxicity and tolerance responses in maize roots. New Phytol (2008) 1.13
Association and linkage analysis of aluminum tolerance genes in maize. PLoS One (2010) 1.12
Transport properties of members of the ZIP family in plants and their role in Zn and Mn homeostasis. J Exp Bot (2013) 1.11
Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics (2006) 1.10
Transport interactions between cadmium and zinc in roots of bread and durum wheat seedlings. Physiol Plant (2002) 1.09
Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens. Plant J (2011) 1.08
Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping. Theor Appl Genet (2009) 1.07
Novel properties of the wheat aluminum tolerance organic acid transporter (TaALMT1) revealed by electrophysiological characterization in Xenopus Oocytes: functional and structural implications. Plant Physiol (2008) 1.07
Characterization of cadmium uptake, translocation and storage in near-isogenic lines of durum wheat that differ in grain cadmium concentration. New Phytol (2006) 1.06
Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae. Genetics (2004) 1.06
Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. Mol Plant Microbe Interact (2007) 1.02
Investigating heavy-metal hyperaccumulation using Thlaspi caerulescens as a model system. Ann Bot (2008) 1.00
Zinc efficiency is correlated with enhanced expression and activity of zinc-requiring enzymes in wheat. Plant Physiol (2003) 1.00
Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice. Plant J (2009) 0.99
High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.). Theor Appl Genet (2003) 0.98
Drosophila ABC transporter, DmHMT-1, confers tolerance to cadmium. DmHMT-1 and its yeast homolog, SpHMT-1, are not essential for vacuolar phytochelatin sequestration. J Biol Chem (2008) 0.98
How can we use genomics to improve cereals with rice as a reference genome? Plant Mol Biol (2005) 0.98
The role of aluminum sensing and signaling in plant aluminum resistance. J Integr Plant Biol (2014) 0.98
Not all ALMT1-type transporters mediate aluminum-activated organic acid responses: the case of ZmALMT1 - an anion-selective transporter. Plant J (2007) 0.98
Low pH, aluminum, and phosphorus coordinately regulate malate exudation through GmALMT1 to improve soybean adaptation to acid soils. Plant Physiol (2013) 0.97
Kinetic properties of a micronutrient transporter from Pisum sativum indicate a primary function in Fe uptake from the soil. Planta (2003) 0.96
Genetic and physiological analysis of iron biofortification in maize kernels. PLoS One (2011) 0.96
Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development. J Exp Bot (2013) 0.94
Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proc Natl Acad Sci U S A (2014) 0.93
A de novo synthesis citrate transporter, Vigna umbellata multidrug and toxic compound extrusion, implicates in Al-activated citrate efflux in rice bean (Vigna umbellata) root apex. Plant Cell Environ (2011) 0.93
A universal core genetic map for rice. Theor Appl Genet (2009) 0.93
A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance. Plant J (2012) 0.93
Gap junctions in Malpighian tubules of Aedes aegypti. J Exp Biol (2008) 0.92
The relationship between population structure and aluminum tolerance in cultivated sorghum. PLoS One (2011) 0.90
Molecular and biochemical characterization of the selenocysteine Se-methyltransferase gene and Se-methylselenocysteine synthesis in broccoli. Plant Physiol (2005) 0.89
Targeted expression of SbMATE in the root distal transition zone is responsible for sorghum aluminum resistance. Plant J (2013) 0.88
Involvement of a broccoli COQ5 methyltransferase in the production of volatile selenium compounds. Plant Physiol (2009) 0.88
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol (2013) 0.87
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics (2011) 0.87
Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance. Proc Natl Acad Sci U S A (2014) 0.87
Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice. Plant Cell Environ (2013) 0.87
A method for cellular localization of gene expression via quantitative in situ hybridization in plants. Plant J (2007) 0.86
Transcriptional regulation of metal transport genes and mineral nutrition during acclimatization to cadmium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population). New Phytol (2009) 0.86
COPT6 is a plasma membrane transporter that functions in copper homeostasis in Arabidopsis and is a novel target of SQUAMOSA promoter-binding protein-like 7. J Biol Chem (2012) 0.86
Biochemical and molecular characterization of the homocysteine S-methyltransferase from broccoli (Brassica oleracea var. italica). Phytochemistry (2007) 0.86
Plant nutrition: Rooting for more phosphorus. Nature (2012) 0.85