Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

PubWeight™: 1.51‹?› | Rank: Top 4%

🔗 View Article (PMC 2663038)

Published in PLoS One on April 08, 2009

Authors

Erik R Zinser1, Debbie Lindell, Zackary I Johnson, Matthias E Futschik, Claudia Steglich, Maureen L Coleman, Matthew A Wright, Trent Rector, Robert Steen, Nathan McNulty, Luke R Thompson, Sallie W Chisholm

Author Affiliations

1: Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.

Articles citing this

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ Microbiol (2010) 2.23

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME J (2013) 1.98

Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface. PLoS One (2011) 1.76

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J (2010) 1.72

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proc Natl Acad Sci U S A (2011) 1.62

Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. PLoS Genet (2016) 1.40

The cyanobacterial circadian system: from biophysics to bioevolution. Annu Rev Biophys (2011) 1.39

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biol (2010) 1.23

Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One (2012) 1.21

Gene regulation of carbon fixation, storage, and utilization in the diatom Phaeodactylum tricornutum acclimated to light/dark cycles. Plant Physiol (2012) 1.14

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. ISME J (2013) 1.12

A day in the life of microcystis aeruginosa strain PCC 7806 as revealed by a transcriptomic analysis. PLoS One (2011) 1.08

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. ISME J (2012) 1.01

Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress. Front Microbiol (2012) 1.00

Global transcriptional responses of the toxic cyanobacterium, Microcystis aeruginosa, to nitrogen stress, phosphorus stress, and growth on organic matter. PLoS One (2013) 1.00

ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res (2011) 0.98

Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria. Front Genet (2014) 0.96

How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics (2013) 0.94

Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511. BMC Microbiol (2010) 0.89

Metabolic compensation and circadian resilience in prokaryotic cyanobacteria. Annu Rev Biochem (2014) 0.89

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. ISME J (2013) 0.89

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles. BMC Syst Biol (2011) 0.88

The long goodbye: the rise and fall of flavodoxin during plant evolution. J Exp Bot (2014) 0.83

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria. Front Microbiol (2013) 0.82

Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling. Microb Ecol (2014) 0.82

Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection. Front Microbiol (2011) 0.82

The effects of hydrogen peroxide on the circadian rhythms of Microcystis aeruginosa. PLoS One (2012) 0.82

Rubisco expression in the dinoflagellate Symbiodinium sp. is influenced by both photoperiod and endosymbiotic lifestyle. Mar Biotechnol (NY) (2014) 0.81

Metatranscriptomic evidence for co-occurring top-down and bottom-up controls on toxic cyanobacterial communities. Appl Environ Microbiol (2015) 0.81

Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana. New Phytol (2016) 0.80

Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes. Glob Chang Biol (2015) 0.80

The transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome. BMC Microbiol (2014) 0.80

Response of Prochlorococcus to varying CO2:O2 ratios. ISME J (2015) 0.79

Genomic taxonomy of the genus prochlorococcus. Microb Ecol (2013) 0.79

Clade-Specific Quantitative Analysis of Photosynthetic Gene Expression in Prochlorococcus. PLoS One (2015) 0.78

Systems biology perspectives on minimal and simpler cells. Microbiol Mol Biol Rev (2014) 0.78

Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context. Annu Rev Genet (2015) 0.78

Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus. ISME J (2016) 0.78

Daily transcriptome changes reveal the role of nitrogen in controlling microcystin synthesis and nutrient transport in the toxic cyanobacterium, Microcystis aeruginosa. BMC Genomics (2015) 0.77

Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus. mSystems (2016) 0.76

Evolution of KaiC-Dependent Timekeepers: A Proto-circadian Timing Mechanism Confers Adaptive Fitness in the Purple Bacterium Rhodopseudomonas palustris. PLoS Genet (2016) 0.76

Temporal orchestration of glycogen synthase (GlgA) gene expression and glycogen accumulation in the oceanic picoplanktonic cyanobacterium Synechococcus sp. strain WH8103. Appl Environ Microbiol (2012) 0.76

Energetic differences between bacterioplankton trophic groups and coral reef resistance. Proc Biol Sci (2016) 0.75

Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. PLoS One (2017) 0.75

The structural code of cyanobacterial genomes. Nucleic Acids Res (2014) 0.75

Timing the day: what makes bacterial clocks tick? Nat Rev Microbiol (2017) 0.75

Metabolic Genes within Cyanophage Genomes: Implications for Diversity and Evolution. Genes (Basel) (2016) 0.75

Metabolic evolution and the self-organization of ecosystems. Proc Natl Acad Sci U S A (2017) 0.75

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus. Front Microbiol (2016) 0.75

Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage. PLoS One (2016) 0.75

Dysregulation of photosynthetic genes in oceanic Prochlorococcus populations exposed to organic pollutants. Sci Rep (2017) 0.75

Differences in temperature and water chemistry shape distinct diversity patterns in thermophilic microbial communities. Appl Environ Microbiol (2017) 0.75

Carbon use efficiencies and allocation strategies in Prochlorococcus marinus strain PCC 9511 during nitrogen-limited growth. Photosynth Res (2017) 0.75

Articles cited by this

Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88

Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74

Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol (2007) 23.58

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature (2003) 8.53

Photoinhibition of Photosystem II. Inactivation, protein damage and turnover. Biochim Biophys Acta (1993) 8.52

Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev (1999) 8.45

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol (2005) 8.32

Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A (2008) 6.50

Genomic islands and the ecology and evolution of Prochlorococcus. Science (2006) 5.07

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet (2007) 4.25

Emergent biogeography of microbial communities in a model ocean. Science (2007) 4.03

Circadian orchestration of gene expression in cyanobacteria. Genes Dev (1995) 3.95

Flow cytometric analysis of marine bacteria with hoechst 33342. Appl Environ Microbiol (1993) 3.90

Resonating circadian clocks enhance fitness in cyanobacteria. Proc Natl Acad Sci U S A (1998) 3.84

Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proc Natl Acad Sci U S A (2004) 3.38

A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell (2000) 3.31

Photosynthesis genes in marine viruses yield proteins during host infection. Nature (2005) 2.99

Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol (2005) 2.95

Growth of prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific ocean. Science (1995) 2.92

Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics (2004) 2.83

Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci U S A (2006) 2.78

Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol (1999) 2.62

Spatial control of bacterial division-site placement. Nat Rev Microbiol (2005) 2.43

Measurements of variable chlorophyll fluorescence using fast repetition rate techniques: defining methodology and experimental protocols Biochim Biophys Acta (1998) 2.36

A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc Natl Acad Sci U S A (2006) 2.34

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature (2007) 2.27

Noise-robust soft clustering of gene expression time-course data. J Bioinform Comput Biol (2005) 2.25

CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803. Nucleic Acids Res (1998) 2.15

The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism. J Exp Bot (2005) 2.14

Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc Natl Acad Sci U S A (2006) 2.06

A simple method to preserve oceanic phytoplankton for flow cytometric analyses. Cytometry (1989) 2.05

Structure, dynamics, and energetics of the primary photochemistry of photosystem II of oxygenic photosynthesis. Annu Rev Plant Biol (2002) 2.01

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes. Proc Natl Acad Sci U S A (2008) 2.00

Mfuzz: a software package for soft clustering of microarray data. Bioinformation (2007) 1.88

Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry. Bioinformatics (2004) 1.86

The high light-inducible polypeptides in Synechocystis PCC6803. Expression and function in high light. J Biol Chem (2001) 1.85

Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol (2005) 1.80

Different and rapid responses of four cyanobacterial psbA transcripts to changes in light intensity. J Bacteriol (1990) 1.79

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74

Roles for sigma factors in global circadian regulation of the cyanobacterial genome. J Bacteriol (2002) 1.70

A novel evolutionary lineage of carbonic anhydrase (epsilon class) is a component of the carboxysome shell. J Bacteriol (2004) 1.68

Light availability influences the ratio of two forms of D1 in cyanobacterial thylakoids. J Biol Chem (1989) 1.67

Circadian rhythm of nitrogenase gene expression in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. strain IMS 101. J Bacteriol (1998) 1.66

Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability. Mol Syst Biol (2006) 1.62

Septum enlightenment: assembly of bacterial division proteins. J Bacteriol (2006) 1.61

Bacterial luciferase as a reporter of circadian gene expression in cyanobacteria. J Bacteriol (1995) 1.60

Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light-dark and continuous-light growth. J Bacteriol (2008) 1.60

The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions. Plant J (2005) 1.60

Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock. Proc Natl Acad Sci U S A (2006) 1.58

Ammonium assimilation in cyanobacteria. Photosynth Res (2005) 1.57

cpmA, a gene involved in an output pathway of the cyanobacterial circadian system. J Bacteriol (1999) 1.56

Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments. Proc Natl Acad Sci U S A (2006) 1.52

Cyanobacterial circadian clocks--timing is everything. Nat Rev Microbiol (2003) 1.50

Characterization and analysis of an NAD(P)H dehydrogenase transcriptional regulator critical for the survival of cyanobacteria facing inorganic carbon starvation and osmotic stress. Mol Microbiol (2001) 1.40

A redox-responsive regulator of photosynthesis gene expression in the cyanobacterium Synechocystis sp. Strain PCC 6803. J Bacteriol (2000) 1.38

A sigma factor that modifies the circadian expression of a subset of genes in cyanobacteria. EMBO J (1996) 1.37

Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA. Mol Microbiol (2006) 1.34

CP12 provides a new mode of light regulation of Calvin cycle activity in higher plants. Proc Natl Acad Sci U S A (1997) 1.33

Ultradian Growth in Prochlorococcus spp. Appl Environ Microbiol (1998) 1.31

Analysis of the hli gene family in marine and freshwater cyanobacteria. FEMS Microbiol Lett (2002) 1.31

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics (2008) 1.20

Antagonistic dark/light-induced SigB/SigD, group 2 sigma factors, expression through redox potential and their roles in cyanobacteria. FEBS Lett (2003) 1.18

Elimination of high-light-inducible polypeptides related to eukaryotic chlorophyll a/b-binding proteins results in aberrant photoacclimation in Synechocystis PCC6803. Biochim Biophys Acta (2003) 1.15

The unique cyanobacterial protein OpcA is an allosteric effector of glucose-6-phosphate dehydrogenase in Nostoc punctiforme ATCC 29133. J Biol Chem (2001) 1.15

No promoter left behind: global circadian gene expression in cyanobacteria. J Biol Rhythms (2006) 1.14

Alternative photosystem I-driven electron transport routes: mechanisms and functions. Photosynth Res (2004) 1.13

Cyanobacterial NDH-1 complexes: multiplicity in function and subunit composition. Physiol Plant (2007) 1.13

Type 2 NADH dehydrogenases in the cyanobacterium Synechocystis sp. strain PCC 6803 are involved in regulation rather than respiration. J Bacteriol (1999) 1.13

The high light-inducible polypeptides stabilize trimeric photosystem I complex under high light conditions in Synechocystis PCC 6803. Plant Physiol (2008) 1.08

Genome-wide analysis of light sensing in Prochlorococcus. J Bacteriol (2006) 1.06

Timekeeping in bacteria: the cyanobacterial circadian clock. Curr Opin Microbiol (2003) 1.04

Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511. J Biol Rhythms (2008) 1.01

Cyanobacterial small chlorophyll-binding protein ScpD (HliB) is located on the periphery of photosystem II in the vicinity of PsbH and CP47 subunits. J Biol Chem (2006) 0.99

Role of sigma factors in controlling global gene expression in light/dark transitions in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol (2007) 0.99

Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511. J Bacteriol (2001) 0.97

Multiple deletions of small Cab-like proteins in the cyanobacterium Synechocystis sp. PCC 6803: consequences for pigment biosynthesis and accumulation. J Biol Chem (2004) 0.96

Expression and phylogeny of the multiple antenna genes of the low-light-adapted strain Prochlorococcus marinus SS120 (Oxyphotobacteria). Plant Mol Biol (2001) 0.96

Cooperation of group 2 sigma factors, SigD and SigE for light-induced transcription in the cyanobacterium Synechocystis sp. PCC 6803. FEBS Lett (2007) 0.93

Diel rhythmicity in amino acid uptake by Prochlorococcus. Environ Microbiol (2008) 0.92

The low-light reduction in the quantum yield of photosynthesis: potential errors and biases when calculating the maximum quantum yield. Photosynth Res (2003) 0.89

Photoinhibitory damage is modulated by the rate of photosynthesis and by the photosystem II light-harvesting chlorophyll antenna size. Planta (1998) 0.88

Differential expression of antenna and core genes in Prochlorococcus PCC 9511 (Oxyphotobacteria) grown under a modulated light-dark cycle. Environ Microbiol (2001) 0.85

Light control of hliA transcription and transcript stability in the cyanobacterium Synechococcus elongatus strain PCC 7942. J Bacteriol (2004) 0.80

Articles by these authors

Community genomics among stratified microbial assemblages in the ocean's interior. Science (2006) 13.31

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature (2003) 8.53

Sequencing genomes from single cells by polymerase cloning. Nat Biotechnol (2006) 7.64

Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A (2008) 6.50

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science (2006) 5.58

Genomic islands and the ecology and evolution of Prochlorococcus. Science (2006) 5.07

Unlocking short read sequencing for metagenomics. PLoS One (2010) 4.88

Whole genome amplification and de novo assembly of single bacterial cells. PLoS One (2009) 4.65

Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature (2003) 4.57

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol (2005) 4.55

Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol (2002) 4.35

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet (2007) 4.25

Emergent biogeography of microbial communities in a model ocean. Science (2007) 4.03

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol (2006) 3.63

The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation. Mol Cell (2011) 3.61

Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science (2008) 3.48

Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proc Natl Acad Sci U S A (2004) 3.38

Photosynthesis genes in marine viruses yield proteins during host infection. Nature (2005) 2.99

Bacterial vesicles in marine ecosystems. Science (2014) 2.94

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A (2011) 2.84

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc Natl Acad Sci U S A (2010) 2.82

Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci U S A (2006) 2.78

Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature (2011) 2.60

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science (2014) 2.58

UniHI: an entry gate to the human protein interactome. Nucleic Acids Res (2006) 2.45

Southern Ocean iron enrichment experiment: carbon cycling in high- and low-Si waters. Science (2004) 2.43

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature (2007) 2.27

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ Microbiol (2010) 2.23

Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Proc Natl Acad Sci U S A (2010) 2.18

Cyanobacterial photosynthesis in the oceans: the origins and significance of divergent light-harvesting strategies. Trends Microbiol (2002) 2.16

Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus. Nat Struct Mol Biol (2010) 2.12

Ecosystem-specific selection pressures revealed through comparative population genomics. Proc Natl Acad Sci U S A (2010) 2.12

Properties of overlapping genes are conserved across microbial genomes. Genome Res (2004) 2.01

Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl Environ Microbiol (2006) 1.81

Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. Environ Microbiol (2008) 1.79

Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface. PLoS One (2011) 1.76

Code and context: Prochlorococcus as a model for cross-scale biology. Trends Microbiol (2007) 1.75

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74

From annotated genomes to metabolic flux models and kinetic parameter fitting. OMICS (2003) 1.64

Analysis of high-throughput sequencing and annotation strategies for phage genomes. PLoS One (2010) 1.64

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proc Natl Acad Sci U S A (2011) 1.62

Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability. Mol Syst Biol (2006) 1.62

Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. J Mol Biol (2009) 1.56

An open-source oligomicroarray standard for human and mouse. Nat Biotechnol (2002) 1.54

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'. Environ Microbiol (2009) 1.53

Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ Microbiol (2006) 1.53

Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria. Appl Environ Microbiol (2008) 1.51

Roles of viruses in the environment. Environ Microbiol (2009) 1.45

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J (2010) 1.44

Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Curr Biol (2008) 1.33

Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters. Environ Microbiol (2009) 1.33

Portal protein diversity and phage ecology. Environ Microbiol (2008) 1.33

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome. Nucleic Acids Res (2008) 1.28

Antisense RNA protects mRNA from RNase E degradation by RNA-RNA duplex formation during phage infection. Nucleic Acids Res (2011) 1.24

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biol (2010) 1.23

Cross-scale ecological dynamics and microbial size spectra in marine ecosystems. Proc Biol Sci (2002) 1.22

Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One (2012) 1.21

On the complete determination of biological systems. Trends Biotechnol (2003) 1.20

Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes. Proc Natl Acad Sci U S A (2010) 1.17

Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. Bioinformatics (2009) 1.17

Exploring the prokaryotic virosphere. Res Microbiol (2008) 1.14

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability. ISME J (2011) 1.13

Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria. ISME J (2011) 1.11

Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. Appl Environ Microbiol (2012) 1.10

Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulatory gene ntcA. Environ Microbiol (2006) 1.07

Genomic organization of infectious salmon anaemia virus. J Gen Virol (2002) 1.06

Genome-wide analysis of light sensing in Prochlorococcus. J Bacteriol (2006) 1.06