Published in Plant Physiol on April 17, 2009
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PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res (2009) 1.98
Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants. Plant Physiol (2010) 1.93
Proline metabolism and its implications for plant-environment interaction. Arabidopsis Book (2010) 1.69
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Essential role of tissue-specific proline synthesis and catabolism in growth and redox balance at low water potential. Plant Physiol (2011) 1.52
Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly. Plant Physiol (2010) 1.51
Regulation of starch biosynthesis in response to a fluctuating environment. Plant Physiol (2011) 1.46
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Peroxiredoxins in plants and cyanobacteria. Antioxid Redox Signal (2011) 1.41
Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings. Plant J (2012) 1.36
Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiol (2009) 1.27
Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation. Nat Commun (2013) 1.26
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF). Proc Natl Acad Sci U S A (2011) 1.20
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ATP synthase repression in tobacco restricts photosynthetic electron transport, CO2 assimilation, and plant growth by overacidification of the thylakoid lumen. Plant Cell (2011) 1.08
Modulation of protein phosphorylation, N-glycosylation and Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection. Mol Cell Proteomics (2012) 1.08
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Protein kinases and phosphatases involved in the acclimation of the photosynthetic apparatus to a changing light environment. Philos Trans R Soc Lond B Biol Sci (2012) 1.06
The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features. Curr Genet (2011) 1.05
Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean. Plant Physiol (2012) 1.04
Chloroplast-localized protein kinases: a step forward towards a complete inventory. J Exp Bot (2012) 1.04
High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29. PLoS One (2011) 1.02
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AtSIG6, a plastid sigma factor from Arabidopsis, reveals functional impact of cpCK2 phosphorylation. Plant J (2010) 1.00
Regulation of Leaf Starch Degradation by Abscisic Acid Is Important for Osmotic Stress Tolerance in Plants. Plant Cell (2016) 1.00
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Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress. Mol Cell Proteomics (2013) 0.97
ABC1K atypical kinases in plants: filling the organellar kinase void. Trends Plant Sci (2012) 0.96
Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots. Plant Physiol (2012) 0.96
The acidic A-domain of Arabidopsis TOC159 occurs as a hyperphosphorylated protein. Plant Physiol (2010) 0.96
Proteome analysis of peroxisomes from etiolated Arabidopsis seedlings identifies a peroxisomal protease involved in β-oxidation and development. Plant Physiol (2013) 0.96
The phosphorylation status of the chloroplast protein kinase STN7 of Arabidopsis affects its turnover. Plant Physiol (2011) 0.95
Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot (2011) 0.95
Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC). Mol Cell Proteomics (2013) 0.95
Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. Mol Cell Proteomics (2013) 0.95
Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level. Plant Physiol (2012) 0.94
Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development. J Exp Bot (2013) 0.94
Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth. Mol Cell Proteomics (2013) 0.93
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics (2010) 0.92
Enhancing Arabidopsis leaf growth by engineering the BRASSINOSTEROID INSENSITIVE1 receptor kinase. Plant Physiol (2011) 0.92
RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. Nucleic Acids Res (2012) 0.92
Understanding the roles of the thylakoid lumen in photosynthesis regulation. Front Plant Sci (2013) 0.92
Arabidopsis CALCIUM-DEPENDENT PROTEIN KINASE8 and CATALASE3 Function in Abscisic Acid-Mediated Signaling and H2O2 Homeostasis in Stomatal Guard Cells under Drought Stress. Plant Cell (2015) 0.91
P(3)DB: An Integrated Database for Plant Protein Phosphorylation. Front Plant Sci (2012) 0.91
Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar. BMC Plant Biol (2011) 0.90
Large-scale analysis of phosphorylated proteins in maize leaf. Planta (2010) 0.90
Arabidopsis RTNLB1 and RTNLB2 Reticulon-like proteins regulate intracellular trafficking and activity of the FLS2 immune receptor. Plant Cell (2011) 0.89
STATE TRANSITION7-Dependent Phosphorylation Is Modulated by Changing Environmental Conditions, and Its Absence Triggers Remodeling of Photosynthetic Protein Complexes. Plant Physiol (2015) 0.89
Light- and metabolism-related regulation of the chloroplast ATP synthase has distinct mechanisms and functions. J Biol Chem (2013) 0.89
Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. PLoS One (2011) 0.88
pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool. Front Plant Sci (2012) 0.88
Phosphorylation of intrinsically disordered regions in remorin proteins. Front Plant Sci (2012) 0.88
iTRAQ-based quantitative proteome and phosphoprotein characterization reveals the central metabolism changes involved in wheat grain development. BMC Genomics (2014) 0.88
Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens. J Exp Bot (2013) 0.88
Plastid casein kinase 2 knockout reduces abscisic acid (ABA) sensitivity, thermotolerance, and expression of ABA- and heat-stress-responsive nuclear genes. J Exp Bot (2014) 0.88
Photosynthetic complex stoichiometry dynamics in higher plants: environmental acclimation and photosynthetic flux control. Front Plant Sci (2014) 0.87
Nuclear-encoded factors associated with the chloroplast transcription machinery of higher plants. Front Plant Sci (2014) 0.87
Control of STN7 transcript abundance and transient STN7 dimerisation are involved in the regulation of STN7 activity. Planta (2012) 0.87
Signal processing by protein tyrosine phosphorylation in plants. Plant Signal Behav (2011) 0.87
Signal integration by chloroplast phosphorylation networks: an update. Front Plant Sci (2012) 0.86
Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton. BMC Genomics (2014) 0.86
Cross-talk between calcium signalling and protein phosphorylation at the thylakoid. J Exp Bot (2011) 0.86
Callose biosynthesis in Arabidopsis with a focus on pathogen response: what we have learned within the last decade. Ann Bot (2014) 0.85
Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. Front Plant Sci (2012) 0.84
Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases. Biochem J (2014) 0.84
PHOTOSYSTEM II SUBUNIT R is required for efficient binding of LIGHT-HARVESTING COMPLEX STRESS-RELATED PROTEIN3 to photosystem II-light-harvesting supercomplexes in Chlamydomonas reinhardtii. Plant Physiol (2015) 0.84
Predicting and analyzing protein phosphorylation sites in plants using musite. Front Plant Sci (2012) 0.84
Posttranslational Modification of Maize Chloroplast Pyruvate Orthophosphate Dikinase Reveals the Precise Regulatory Mechanism of Its Enzymatic Activity. Plant Physiol (2014) 0.83
Regulatory properties of ADP glucose pyrophosphorylase are required for adjustment of leaf starch synthesis in different photoperiods. Plant Physiol (2014) 0.83
Quantitative phosphoproteomics analysis of nitric oxide-responsive phosphoproteins in cotton leaf. PLoS One (2014) 0.82
Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways. Mol Cell Proteomics (2015) 0.82
Posttranslational modifications of FERREDOXIN-NADP+ OXIDOREDUCTASE in Arabidopsis chloroplasts. Plant Physiol (2014) 0.82
The Arabidopsis protein CONSERVED ONLY IN THE GREEN LINEAGE160 promotes the assembly of the membranous part of the chloroplast ATP synthase. Plant Physiol (2014) 0.82
Posttranslational Modifications of Chloroplast Proteins: An Emerging Field. Plant Physiol (2015) 0.82
Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. BMC Genomics (2014) 0.82
Arabidopsis MSL10 has a regulated cell death signaling activity that is separable from its mechanosensitive ion channel activity. Plant Cell (2014) 0.81
Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii. Proteome Sci (2014) 0.81
Proteomic Analysis Reveals Key Proteins and Phosphoproteins upon Seed Germination of Wheat (Triticum aestivum L.). Front Plant Sci (2015) 0.80
A purification strategy for analysis of the DNA/RNA-associated sub-proteome from chloroplasts of mustard cotyledons. Front Plant Sci (2014) 0.80
Emerging roles of protein kinase CK2 in abscisic acid signaling. Front Plant Sci (2015) 0.80
The RNA-binding protein RNP29 is an unusual Toc159 transport substrate. Front Plant Sci (2014) 0.80
Phosphorylation of serine residues in the N-terminus modulates the activity of ACA8, a plasma membrane Ca2+-ATPase of Arabidopsis thaliana. J Exp Bot (2011) 0.79
Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase. EMBO Rep (2016) 0.79
Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar. Plant Mol Biol (2011) 0.79
Phosphorylation of Arabidopsis transketolase at Ser428 provides a potential paradigm for the metabolic control of chloroplast carbon metabolism. Biochem J (2014) 0.79
The peptide microarray "ChloroPhos1.0" identifies new phosphorylation targets of plastid casein kinase II (pCKII) in Arabidopsis thaliana. PLoS One (2014) 0.79
Large-scale comparative phosphoprotein analysis of maize seedling leaves during greening. Planta (2015) 0.79
GUN4-Protoporphyrin IX Is a Singlet Oxygen Generator with Consequences for Plastid Retrograde Signaling. J Biol Chem (2016) 0.78
Emerging mechanisms of mRNP remodeling regulation. Wiley Interdiscip Rev RNA (2014) 0.78
Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Bioinformatics (2012) 0.78
Multiplex staining of 2-DE gels for an initial phosphoproteome analysis of germinating seeds and early grown seedlings from a non-orthodox specie: Quercus ilex L. subsp. ballota [Desf.] Samp. Front Plant Sci (2015) 0.77
The Plastid Casein Kinase 2 Phosphorylates Rubisco Activase at the Thr-78 Site but Is Not Essential for Regulation of Rubisco Activation State. Front Plant Sci (2016) 0.77
Structure of the catalytic domain of a state transition kinase homolog from Micromonas algae. Protein Cell (2013) 0.77
Identification of differentially expressed proteins and phosphorylated proteins in rice seedlings in response to strigolactone treatment. PLoS One (2014) 0.77
Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana. Front Plant Sci (2016) 0.77
Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis. BMC Genomics (2015) 0.77
Regulation of the Regulators: Post-Translational Modifications, Subcellular, and Spatiotemporal Distribution of Plant 14-3-3 Proteins. Front Plant Sci (2016) 0.76
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Systematic discovery of in vivo phosphorylation networks. Cell (2007) 6.94
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Large-scale phosphorylation analysis of mouse liver. Proc Natl Acad Sci U S A (2007) 6.08
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SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling. Proteomics (2007) 3.60
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Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Nat Methods (2007) 3.46
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Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol Cell Proteomics (2007) 3.33
Intensity-based protein identification by machine learning from a library of tandem mass spectra. Nat Biotechnol (2004) 3.30
State transitions and light adaptation require chloroplast thylakoid protein kinase STN7. Nature (2005) 3.07
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Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev (2009) 3.31
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The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev (2003) 2.99
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The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell (2005) 2.77
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A previously unknown maltose transporter essential for starch degradation in leaves. Science (2004) 2.68
Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J (2003) 2.56
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Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol (2005) 2.46
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A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. Plant J (2004) 2.22
Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches. J Proteome Res (2007) 2.21
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Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts. Plant Cell (2008) 1.72
Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development. Development (2003) 1.65
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Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals. J Biol Chem (2006) 1.53
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Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. J Biol Chem (2006) 1.48
AtALMT12 represents an R-type anion channel required for stomatal movement in Arabidopsis guard cells. Plant J (2010) 1.47
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Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. Genes Dev (2006) 1.41
Network analysis of the MVA and MEP pathways for isoprenoid synthesis. Annu Rev Plant Biol (2013) 1.41
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Arabidopsis RETINOBLASTOMA-RELATED is required for stem cell maintenance, cell differentiation, and lateral organ production. Plant Cell (2010) 1.39
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5-Fluorouracil is efficiently removed from DNA by the base excision and mismatch repair systems. Gastroenterology (2007) 1.39
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol (2012) 1.38
Exploiting the combination of natural and genetically engineered resistance to cassava mosaic and cassava brown streak viruses impacting cassava production in Africa. PLoS One (2012) 1.33
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Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnol J (2009) 1.33
Regulation of GABAergic synapse formation and plasticity by GSK3beta-dependent phosphorylation of gephyrin. Proc Natl Acad Sci U S A (2010) 1.32
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Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. J Biol Chem (2006) 1.29
Proteome dynamics during plastid differentiation in rice. Plant Physiol (2006) 1.28
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Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation. Mol Plant (2009) 1.24
iTRAQ-based analysis of changes in the cassava root proteome reveals pathways associated with post-harvest physiological deterioration. Plant J (2011) 1.23
Regulation of flowering time by Arabidopsis MSI1. Development (2006) 1.22
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Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases. Mol Plant (2008) 1.21
High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance. Proc Natl Acad Sci U S A (2012) 1.20
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF). Proc Natl Acad Sci U S A (2011) 1.20
Semi-supervised LC/MS alignment for differential proteomics. Bioinformatics (2006) 1.19
Enlarged meristems and delayed growth in plp mutants result from lack of CaaX prenyltransferases. Proc Natl Acad Sci U S A (2004) 1.19
Prolyl isomerase PIN1 regulates DNA double-strand break repair by counteracting DNA end resection. Mol Cell (2013) 1.19
Chromatin-remodeling and memory factors. New regulators of plant development. Plant Physiol (2002) 1.18
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J (2008) 1.18
A dynamic reciprocal RBR-PRC2 regulatory circuit controls Arabidopsis gametophyte development. Curr Biol (2008) 1.17
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Arabidopsis MSI1 connects LHP1 to PRC2 complexes. EMBO J (2013) 1.16