Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness.

PubWeight™: 0.89‹?›

🔗 View Article (PMC 2861316)

Published in Stat Appl Genet Mol Biol on May 05, 2009

Authors

Bryce Borchers1, Marshall Brown, Brian McLellan, Airat Bekmetjev, Nathan L Tintle

Author Affiliations

1: Rose-Hulman Institute of Technology, USA. borcheb1@rose-hulman.edu

Articles cited by this

From genotypes to genes: doubling the sample size. Biometrics (1997) 11.46

Genotyping errors: causes, consequences and solutions. Nat Rev Genet (2005) 5.00

Trend tests for case-control studies of genetic markers: power, sample size and robustness. Hum Hered (2002) 4.64

How to track and assess genotyping errors in population genetics studies. Mol Ecol (2004) 4.62

Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms. Hum Hered (2002) 2.74

Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data. Am J Hum Genet (2002) 2.15

Case-control studies of genetic markers: power and sample size approximations for Armitage's test for trend. Hum Hered (2001) 2.14

What SNP genotyping errors are most costly for genetic association studies? Genet Epidemiol (2004) 2.00

Assessment and management of single nucleotide polymorphism genotype errors in genetic association analysis. Pac Symp Biocomput (2001) 1.62

Increasing power for tests of genetic association in the presence of phenotype and/or genotype error by use of double-sampling. Stat Appl Genet Mol Biol (2004) 1.61

Successful design and conduct of genome-wide association studies. Hum Mol Genet (2007) 1.55

Allowing for genotyping error in analysis of unmatched case-control studies. Ann Hum Genet (2003) 1.21

Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference. Genomics (2007) 1.20

Using duplicate genotyped data in genetic analyses: testing association and estimating error rates. Stat Appl Genet Mol Biol (2007) 1.16

The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies. Ann Hum Genet (2006) 1.15

Optimal two-stage design for case-control association analysis incorporating genotyping errors. Ann Hum Genet (2008) 1.12

Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research. BMC Genet (2005) 1.10

Linear trend tests for case-control genetic association that incorporate random phenotype and genotype misclassification error. Genet Epidemiol (2007) 1.03

On estimation of the variance in Cochran-Armitage trend tests for genetic association using case-control studies. Stat Med (2006) 0.96

Repeated measurement sampling in genetic association analysis with genotyping errors. Genet Epidemiol (2007) 0.93

The cost effectiveness of duplicate genotyping for testing genetic association. Ann Hum Genet (2009) 0.92

Estimating the single nucleotide polymorphism genotype misclassification from routine double measurements in a large epidemiologic sample. Am J Epidemiol (2008) 0.81

Reproducibility of Genotypes as Measured by the Affymetrix GeneChip® 100K Human Mapping Array Set. Comput Stat Data Anal (2008) 0.81

Articles by these authors

Epidemiology of psychiatric and alcohol disorders in Ukraine: findings from the Ukraine World Mental Health survey. Soc Psychiatry Psychiatr Epidemiol (2005) 1.51

A geometric framework for evaluating rare variant tests of association. Genet Epidemiol (2013) 1.28

Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16. BMC Proc (2009) 1.26

Assessing methods for assigning SNPs to genes in gene-based tests of association using common variants. PLoS One (2013) 1.06

Assessing the impact of differential genotyping errors on rare variant tests of association. PLoS One (2013) 1.04

Epidemiology of heavy alcohol use in Ukraine: findings from the world mental health survey. Alcohol Alcohol (2005) 0.93

Smoking initiation and nicotine dependence symptoms in Ukraine: findings from the Ukraine World Mental Health survey. Public Health (2007) 0.84

Evaluating incremental values from new predictors with net reclassification improvement in survival analysis. Lifetime Data Anal (2012) 0.81

Value of Mendelian laws of segregation in families: data quality control, imputation, and beyond. Genet Epidemiol (2014) 0.78

The State-Trait Hopelessness Scale: development and testing. West J Nurs Res (2013) 0.77

The cost-effectiveness of reclassification sampling for prevalence estimation. PLoS One (2012) 0.75

Impact of Home- and Hospital-Based Exercise in Cardiac Rehabilitation on Hopelessness in Patients With Coronary Heart Disease. J Cardiopulm Rehabil Prev (2016) 0.75

Incorporating prior knowledge to increase the power of genome-wide association studies. Methods Mol Biol (2013) 0.75