Published in Bioinformatics on June 15, 2009
Tracing the tumor lineage. Mol Oncol (2010) 1.56
Accurate reconstruction of the temporal order of mutations in neoplastic progression. Cancer Prev Res (Phila) (2011) 1.21
Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics. PLoS Comput Biol (2014) 0.98
Methods and challenges in timing chromosomal abnormalities within cancer samples. Bioinformatics (2013) 0.81
Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data. PLoS One (2012) 0.78
Inferring models of multiscale copy number evolution for single-tumor phylogenetics. Bioinformatics (2015) 0.76
Testing clonality of three and more tumors using their loss of heterozygosity profiles. Stat Appl Genet Mol Biol (2012) 0.75
The evolution of tumour phylogenetics: principles and practice. Nat Rev Genet (2017) 0.75
Modification of enzymatically amplified DNA for the detection of point mutations. Nucleic Acids Res (1989) 2.54
Analysis of genomic alterations in benign, atypical, and anaplastic meningiomas: toward a genetic model of meningioma progression. Proc Natl Acad Sci U S A (1997) 1.76
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J (2011) 1.59
Gain of chromosome arm 9p is characteristic of primary mediastinal B-cell lymphoma (MBL): comprehensive molecular cytogenetic analysis and presentation of a novel MBL cell line. Genes Chromosomes Cancer (2001) 1.49
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks. Genome Res (2012) 1.47
Translocations involving 8q24 in Burkitt lymphoma and other malignant lymphomas: a historical review of cytogenetics in the light of todays knowledge. Leukemia (2008) 1.43
Classification and feature selection algorithms for multi-class CGH data. Bioinformatics (2008) 1.28
SubMAP: aligning metabolic pathways with subnetwork mappings. J Comput Biol (2011) 1.24
Distance-based clustering of CGH data. Bioinformatics (2006) 1.11
Scalable steady state analysis of Boolean biological regulatory networks. PLoS One (2009) 1.11
Silver-Russell patients showing a broad range of ICR1 and ICR2 hypomethylation in different tissues. Clin Genet (2010) 1.10
Generalized field-splitting algorithms for optimal IMRT delivery efficiency. Phys Med Biol (2007) 1.07
Optimal field splitting for large intensity-modulated fields. Med Phys (2004) 1.04
Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome. J Med Genet (2009) 1.00
An iterative algorithm for metabolic network-based drug target identification. Pac Symp Biocomput (2007) 1.00
Mining metabolic networks for optimal drug targets. Pac Symp Biocomput (2008) 0.99
MUC1 oncogene amplification correlates with protein overexpression in invasive breast carcinoma cells. Cancer Genet Cytogenet (2010) 0.97
High-level DNA amplifications are common genetic aberrations in B-cell neoplasms. Am J Pathol (1997) 0.96
PSI: indexing protein structures for fast similarity search. Bioinformatics (2003) 0.96
PKC signaling prevents irradiation-induced apoptosis of primary human fibroblasts. Cell Death Dis (2013) 0.95
Markers improve clustering of CGH data. Bioinformatics (2006) 0.94
t(11;14)-positive mantle cell lymphomas exhibit complex karyotypes and share similarities with B-cell chronic lymphocytic leukemia. Genes Chromosomes Cancer (2000) 0.94
CFTR and asthma in the French EGEA study. Eur J Hum Genet (2001) 0.94
Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects. PLoS One (2013) 0.94
A fast and accurate algorithm for comparative analysis of metabolic pathways. J Bioinform Comput Biol (2009) 0.91
Early innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbits. Cell Commun Signal (2013) 0.90
Probabilistic biological network alignment. IEEE/ACM Trans Comput Biol Bioinform (2013) 0.90
Chromosome imbalances in papillary renal cell carcinoma and first cytogenetic data of familial cases analyzed by comparative genomic hybridization. Cytogenet Cell Genet (1996) 0.88
Large-scale signaling network reconstruction. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.86
A novel genome-scale repeat finder geared towards transposons. Bioinformatics (2007) 0.85
Molecular immunologic correlates of spontaneous latency in a rabbit model of pulmonary tuberculosis. Cell Commun Signal (2013) 0.85
Consistent alignment of metabolic pathways without abstraction. Comput Syst Bioinformatics Conf (2008) 0.83
Optimal leaf sequencing with elimination of tongue-and-groove underdosage. Phys Med Biol (2004) 0.83
Index-based similarity search for protein structure databases. J Bioinform Comput Biol (2004) 0.83
HIDEN: Hierarchical decomposition of regulatory networks. BMC Bioinformatics (2012) 0.83
Leaf sequencing algorithms for segmented multileaf collimation. Phys Med Biol (2003) 0.83
A Novel algorithm for identifying low-complexity regions in a protein sequence. Bioinformatics (2006) 0.83
A scalable method for discovering significant subnetworks. BMC Syst Biol (2013) 0.82
Algorithms for optimal sequencing of dynamic multileaf collimators. Phys Med Biol (2004) 0.82
Metabolic network alignment in large scale by network compression. BMC Bioinformatics (2012) 0.81
Losses at chromosome 4q are associated with poor survival in operable ductal pancreatic adenocarcinoma. Pancreatology (2011) 0.81
Systems biology-based identification of Mycobacterium tuberculosis persistence genes in mouse lungs. MBio (2014) 0.80
Pathway-BasedFeature Selection Algorithm for Cancer Microarray Data. Adv Bioinformatics (2010) 0.79
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees. BMC Bioinformatics (2012) 0.79
Towards index-based similarity search for protein structure databases. Proc IEEE Comput Soc Bioinform Conf (2003) 0.79
A novel mutation (Arg-->Leu in exon 18) in factor VIII gene responsible for moderate hemophilia A. Hum Mutat (1992) 0.78
A new approach for alignment of multiple proteins. Pac Symp Biocomput (2006) 0.78
SSLPred: predicting synthetic sickness lethality. Pac Symp Biocomput (2012) 0.77
Manipulating the steady state of metabolic pathways. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.77
Efficacy of current molecular cytogenetic protocols for the diagnosis of chromosome aberrations in tumor specimens. Cytokines Mol Ther (1996) 0.77
RINQ: Reference-based Indexing for Network Queries. Bioinformatics (2011) 0.77
Double iterative optimisation for metabolic network-based drug target identification. Int J Data Min Bioinform (2009) 0.77
Topac: alignment of gene regulatory networks using topology-aware coloring. J Bioinform Comput Biol (2012) 0.76
Reachability Analysis in Probabilistic Biological Networks. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.76
Identification of genetic imbalances in malignant lymphoma using comparative genomic hybridization. Stem Cells (1995) 0.75
Multicore and GPU algorithms for Nussinov RNA folding. BMC Bioinformatics (2014) 0.75
Signal reachability facilitates characterization of probabilistic signaling networks. BMC Bioinformatics (2015) 0.75
Pairwise Sequence Alignment for Very Long Sequences on GPUs. IEEE Int Conf Comput Adv Bio Med Sci (2012) 0.75
CMRF: analyzing differential gene regulation in two group perturbation experiments. BMC Genomics (2012) 0.75
Actigraphy features for predicting mobility disability in older adults. Physiol Meas (2016) 0.75
De novo mutation in hemophilia A established by DNA haplotype analysis and precluding prenatal diagnosis. Hum Genet (1986) 0.75
Stability analysis of phylogenetic trees. Bioinformatics (2012) 0.75
TRIAL: a tool for finding distant structural similarities. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.75
Study of a restriction fragment length polymorphism for serum amyloid P gene in rheumatoid arthritis with amyloidosis. J Rheumatol (1991) 0.75
Fast fluctuations of glycosylated hemoglobins. II. Hemoglobin A1c determination and oral glucose tolerance test. Clin Chim Acta (1982) 0.75
Characterizing Topology of Probabilistic Biological Networks. IEEE/ACM Trans Comput Biol Bioinform (2013) 0.75
GBA manager: an online tool for querying low-complexity regions in proteins. J Comput Biol (2010) 0.75
Potential of chromosomal and matrix-based comparative genomic hybridization for molecular diagnostics in lymphomas. Ann Hematol (2001) 0.75
[Prenatal diagnosis of hemophilia A by analysis of DNA]. Ann Med Interne (Paris) (1986) 0.75
From uncertain protein interaction networks to signaling pathways through intensive color coding. Pac Symp Biocomput (2013) 0.75
A comparison of step-and-shoot leaf sequencing algorithms that eliminate tongue-and-groove effects. Phys Med Biol (2004) 0.75
QOMA: quasi-optimal multiple alignment of protein sequences. Bioinformatics (2006) 0.75