Published in J Bacteriol on June 19, 2009
Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping. PLoS One (2013) 1.42
Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching. Chem Rev (2012) 1.42
Genome sequence of a dominant, multidrug-resistant Acinetobacter baumannii strain, TCDC-AB0715. J Bacteriol (2011) 1.22
Genomic analysis of Acinetobacter baumannii A118 by comparison of optical maps: identification of structures related to its susceptibility phenotype. Antimicrob Agents Chemother (2011) 1.16
Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. MBio (2014) 1.14
Draft genome sequence of a dominant, multidrug-resistant Neisseria gonorrhoeae strain, TCDC-NG08107, from a sexual group at high risk of acquiring human immunodeficiency virus infection and syphilis. J Bacteriol (2011) 1.03
Comparative Genomics Reveal That Host-Innate Immune Responses Influence the Clinical Prevalence of Legionella pneumophila Serogroups. PLoS One (2013) 0.97
Host specific diversity in Lactobacillus johnsonii as evidenced by a major chromosomal inversion and phage resistance mechanisms. PLoS One (2011) 0.91
Comparative whole-genome mapping to determine Staphylococcus aureus genome size, virulence motifs, and clonality. J Clin Microbiol (2012) 0.91
Genome sequence of Acinetobacter baumannii TYTH-1. J Bacteriol (2012) 0.88
Whole genome mapping and re-organization of the nuclear and mitochondrial genomes of Babesia microti isolates. PLoS One (2013) 0.88
High Resolution Typing by Whole Genome Mapping Enables Discrimination of LA-MRSA (CC398) Strains and Identification of Transmission Events. PLoS One (2013) 0.87
A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings. PLoS One (2015) 0.80
Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002. BMC Genomics (2016) 0.78
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology. BMC Bioinformatics (2016) 0.75
Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus. Lancet (2006) 15.99
Genome and virulence determinants of high virulence community-acquired MRSA. Lancet (2002) 14.64
Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc Natl Acad Sci U S A (2004) 8.95
How clonal is Staphylococcus aureus? J Bacteriol (2003) 7.97
The emergence and evolution of methicillin-resistant Staphylococcus aureus. Trends Microbiol (2001) 7.73
Genome sequence of Yersinia pestis KIM. J Bacteriol (2002) 7.14
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol (2003) 5.45
Evolutionary models of the emergence of methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother (2003) 5.29
Pathogenesis of methicillin-resistant Staphylococcus aureus infection. Clin Infect Dis (2008) 3.88
Staphylococcus aureus: superbug, super genome? Trends Microbiol (2004) 3.53
Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes. J Bacteriol (2006) 3.37
Evolution of Staphylococcus aureus by large chromosomal replacements. J Bacteriol (2004) 3.33
A novel methicillin-resistance cassette in community-acquired methicillin-resistant Staphylococcus aureus isolates of diverse genetic backgrounds. J Infect Dis (2002) 3.26
The molecular evolution of methicillin-resistant Staphylococcus aureus. Clin Microbiol Infect (2007) 3.24
Rearrangements in the genome of the bacterium Salmonella typhi. Proc Natl Acad Sci U S A (1995) 3.11
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. Genome Res (2003) 2.96
Optical mapping as a routine tool for bacterial genome sequence finishing. BMC Genomics (2007) 2.71
Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Res (2001) 2.43
Highly plastic chromosomal organization in Salmonella typhi. Proc Natl Acad Sci U S A (1996) 2.43
Genetic variation among hospital isolates of methicillin-sensitive Staphylococcus aureus: evidence for horizontal transfer of virulence genes. J Clin Microbiol (2001) 2.09
Mobile genetic elements and bacterial toxinoses: the superantigen-encoding pathogenicity islands of Staphylococcus aureus. Plasmid (2003) 2.04
Rapid detection of the pandemic methicillin-resistant Staphylococcus aureus clone ST 239, a dominant strain in Asian hospitals. J Clin Microbiol (2008) 1.87
Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylococcus aureus. Funct Integr Genomics (2006) 1.86
Whole-genome shotgun optical mapping of Rhodospirillum rubrum. Appl Environ Microbiol (2005) 1.83
The SaPIs: mobile pathogenicity islands of Staphylococcus. Chem Immunol Allergy (2007) 1.77
Single-molecule approach to bacterial genomic comparisons via optical mapping. J Bacteriol (2004) 1.76
An algorithm for assembly of ordered restriction maps from single DNA molecules. Proc Natl Acad Sci U S A (2006) 1.63
Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak. Microbiology (2008) 1.51
Dynamic bacterial genome organization. Mol Microbiol (1997) 1.48
Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12. Microbiology (2006) 1.44
Optical maps distinguish individual strains of Escherichia coli O157 : H7. Microbiology (2007) 1.29
A natural large chromosomal inversion in Lactococcus lactis is mediated by homologous recombination between two insertion sequences. J Bacteriol (1998) 1.27
Evidence for clonal evolution among highly polymorphic genes in methicillin-resistant Staphylococcus aureus. J Bacteriol (2006) 1.21
Inversions over the terminus region in Salmonella and Escherichia coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar typhi. J Bacteriol (2002) 1.00
Fast and cheap genome wide haplotype construction via optical mapping. Pac Symp Biocomput (2005) 0.83
Optical mapping as a routine tool for bacterial genome sequence finishing. BMC Genomics (2007) 2.71
Whole-genome shotgun optical mapping of Rhodospirillum rubrum. Appl Environ Microbiol (2005) 1.83
Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups. Microbiology (2010) 1.21
Evidence of multiple virulence subtypes in nosocomial and community-associated MRSA genotypes in companion animals from the upper midwestern and northeastern United States. Clin Med Res (2010) 1.18
Virulence genes and genotypic associations in nasal carriage, community-associated methicillin-susceptible and methicillin-resistant USA400 Staphylococcus aureus isolates. J Clin Microbiol (2010) 1.17
Evaluation of SLC35A3 as a candidate gene for human vertebral malformations. Am J Med Genet A (2006) 0.80
Lack of evidence of WNT3A as a candidate gene for congenital vertebral malformations. Scoliosis (2007) 0.78