Published in Proc Natl Acad Sci U S A on June 20, 2011
Convergent evolution of hyperswarming leads to impaired biofilm formation in pathogenic bacteria. Cell Rep (2013) 1.82
The evolution of mutualism in gut microbiota via host epithelial selection. PLoS Biol (2012) 1.55
Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study. BMC Microbiol (2016) 1.51
Quorum-sensing and cheating in bacterial biofilms. Proc Biol Sci (2012) 1.47
Spatial self-organization favors heterotypic cooperation over cheating. Elife (2013) 1.23
Density of founder cells affects spatial pattern formation and cooperation in Bacillus subtilis biofilms. ISME J (2014) 1.21
Spore formation in Bacillus subtilis. Environ Microbiol Rep (2013) 1.19
The Bacillus subtilis cannibalism toxin SDP collapses the proton motive force and induces autolysis. Mol Microbiol (2012) 1.17
Importance of positioning for microbial evolution. Proc Natl Acad Sci U S A (2014) 1.13
Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities. Curr Opin Biotechnol (2013) 1.10
Towards predictive models of the human gut microbiome. J Mol Biol (2014) 1.09
Evolutionary limits to cooperation in microbial communities. Proc Natl Acad Sci U S A (2014) 1.08
Adhesion as a weapon in microbial competition. ISME J (2014) 1.05
Cell-cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies. Proc Natl Acad Sci U S A (2013) 1.04
Competition between species can stabilize public-goods cooperation within a species. Mol Syst Biol (2012) 1.03
Competition studies confirm two major barriers that can preclude the spread of resistance to quorum-sensing inhibitors in bacteria. ACS Chem Biol (2014) 0.98
Motility enhancement through surface modification is sufficient for cyanobacterial community organization during phototaxis. PLoS Comput Biol (2013) 0.98
Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Comput Biol (2013) 0.97
Extracellular matrix structure governs invasion resistance in bacterial biofilms. ISME J (2015) 0.97
Spatial structure, cooperation and competition in biofilms. Nat Rev Microbiol (2016) 0.96
Spatio-temporal differentiation and sociality in spiders. PLoS One (2012) 0.94
Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota. PLoS Comput Biol (2012) 0.94
Resource limitation drives spatial organization in microbial groups. ISME J (2015) 0.93
The Evolution of Quorum Sensing as a Mechanism to Infer Kinship. PLoS Comput Biol (2016) 0.90
From metabolism to ecology: cross-feeding interactions shape the balance between polymicrobial conflict and mutualism. Am Nat (2012) 0.89
Synthetic Ecology of Microbes: Mathematical Models and Applications. J Mol Biol (2015) 0.88
War and peace: social interactions in infections. Philos Trans R Soc Lond B Biol Sci (2014) 0.88
Bacteriophages limit the existence conditions for conjugative plasmids. MBio (2015) 0.87
Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms. Elife (2017) 0.87
Privatization of cooperative benefits stabilizes mutualistic cross-feeding interactions in spatially structured environments. ISME J (2015) 0.87
Stability of multispecies bacterial communities: signaling networks may stabilize microbiomes. PLoS One (2013) 0.87
Intra- and inter-species interactions within biofilms of important foodborne bacterial pathogens. Front Microbiol (2015) 0.86
In the light of evolution V: cooperation and conflict. Proc Natl Acad Sci U S A (2011) 0.84
The role of quorum sensing signalling in EPS production and the assembly of a sludge community into aerobic granules. ISME J (2014) 0.84
Experimental evolution in biofilm populations. FEMS Microbiol Rev (2016) 0.84
Role of environmental and antibiotic stress on Staphylococcus epidermidis biofilm microstructure. Langmuir (2013) 0.81
Photodynamic inactivation of biofilm: taking a lightly colored approach to stubborn infection. Expert Rev Anti Infect Ther (2013) 0.81
The demographic determinants of human microbiome health. Trends Microbiol (2014) 0.81
Modeling evolution of spatially distributed bacterial communities: a simulation with the haploid evolutionary constructor. BMC Evol Biol (2015) 0.80
Sharing the sandbox: Evolutionary mechanisms that maintain bacterial cooperation. F1000Res (2015) 0.80
Principles for designing synthetic microbial communities. Curr Opin Microbiol (2016) 0.79
Cheating fosters species co-existence in well-mixed bacterial communities. ISME J (2017) 0.79
Defectors Can Create Conditions That Rescue Cooperation. PLoS Comput Biol (2015) 0.78
Laboratory Evolution of Microbial Interactions in Bacterial Biofilms. J Bacteriol (2016) 0.78
Emergence of microbial networks as response to hostile environments. Front Microbiol (2014) 0.78
Antibiotic stress selects against cooperation in the pathogenic bacterium Pseudomonas aeruginosa. Proc Natl Acad Sci U S A (2017) 0.77
Making pathogens sociable: the [corrected] emergence of high relatedness through limited host invasibility. ISME J (2015) 0.77
Inferring microbial interaction network from microbiome data using RMN algorithm. BMC Syst Biol (2015) 0.77
Culturing oil sands microbes as mixed species communities enhances ex situ model naphthenic acid degradation. Front Microbiol (2015) 0.76
Sociomicrobiology and Pathogenic Bacteria. Microbiol Spectr (2016) 0.76
Systems biology of host-fungus interactions: turning complexity into simplicity. Curr Opin Microbiol (2012) 0.76
Adding biotic complexity alters the metabolic benefits of mutualism. Evolution (2016) 0.75
Phenotypic Microdiversity and Phylogenetic Signal Analysis of Traits Related to Social Interaction in Bacillus spp. from Sediment Communities. Front Microbiol (2017) 0.75
Selection methods regulate evolution of cooperation in digital evolution. J R Soc Interface (2013) 0.75
Phenotypic Heterogeneity and the Evolution of Bacterial Life Cycles. PLoS Comput Biol (2016) 0.75
Effects of Spatial Localization on Microbial Consortia Growth. PLoS One (2017) 0.75
Comparative Ploidy Proteomics of Candida albicans Biofilms Unraveled the Role of the AHP1 Gene in the Biofilm Persistence Against Amphotericin B. Mol Cell Proteomics (2016) 0.75
Extracellular Polymeric Substance Production and Aggregated Bacteria Colonization Influence the Competition of Microbes in Biofilms. Front Microbiol (2017) 0.75
Diversity of the human intestinal microbial flora. Science (2005) 49.64
The genetical evolution of social behaviour. I. J Theor Biol (1964) 46.36
Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A (2006) 42.38
Microbial ecology: human gut microbes associated with obesity. Nature (2006) 36.98
Evolution of mammals and their gut microbes. Science (2008) 21.40
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol (1998) 21.35
Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol (2004) 18.85
Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell (2006) 18.83
Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol (1998) 17.18
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol (2007) 13.99
Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J (2007) 13.95
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut (2005) 10.95
Gut flora in health and disease. Lancet (2003) 9.85
Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science (2005) 9.75
Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature (2002) 9.07
Social evolution theory for microorganisms. Nat Rev Microbiol (2006) 6.41
Cooperation and competition in pathogenic bacteria. Nature (2004) 6.14
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. J Clin Microbiol (2005) 5.62
Cooperation and conflict in quorum-sensing bacterial populations. Nature (2007) 5.33
FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. Cell (2008) 3.76
The evolution of interspecific mutualisms. Proc Natl Acad Sci U S A (1998) 3.68
Snowdrift game dynamics and facultative cheating in yeast. Nature (2009) 3.66
Generic modelling of cooperative growth patterns in bacterial colonies. Nature (1994) 3.65
Multilevel selection, cooperation, and altruism : Reflections on unto others: The evolution and psychology of unselfish behavior. Hum Nat (1999) 3.64
The evolution of social behavior in microorganisms. Trends Ecol Evol (2001) 3.58
Self-organized similarity, the evolutionary emergence of groups of similar species. Proc Natl Acad Sci U S A (2006) 3.37
Assembly of the human intestinal microbiota. Trends Ecol Evol (2006) 3.21
The sociobiology of biofilms. FEMS Microbiol Rev (2008) 3.19
Single-gene greenbeard effects in the social amoeba Dictyostelium discoideum. Science (2003) 3.17
Genetic drift at expanding frontiers promotes gene segregation. Proc Natl Acad Sci U S A (2007) 3.14
Evolution of species interactions in a biofilm community. Nature (2007) 3.01
Biofilms promote altruism. Microbiology (2004) 2.96
Vibrio fischeri lux genes play an important role in colonization and development of the host light organ. J Bacteriol (2000) 2.85
Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci U S A (2007) 2.79
The Prisoner's Dilemma and polymorphism in yeast SUC genes. Proc Biol Sci (2004) 2.68
A general model for the evolution of mutualisms. J Evol Biol (2006) 2.53
From structure to function: the ecology of host-associated microbial communities. Microbiol Mol Biol Rev (2010) 2.42
Pleiotropy as a mechanism to stabilize cooperation. Nature (2004) 2.37
Quorum sensing and the social evolution of bacterial virulence. Curr Biol (2009) 2.35
Emergence of spatial structure in cell groups and the evolution of cooperation. PLoS Comput Biol (2010) 2.35
The evolution of quorum sensing in bacterial biofilms. PLoS Biol (2008) 2.32
The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol (2009) 2.23
Rules of engagement: interspecies interactions that regulate microbial communities. Annu Rev Microbiol (2008) 2.22
Cooperation peaks at intermediate disturbance. Curr Biol (2007) 2.16
Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature. J Clin Gastroenterol (2005) 2.08
A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa. Mol Microbiol (2010) 1.91
Novel cooperation experimentally evolved between species. Evolution (2010) 1.82
Oral biofilms: emerging concepts in microbial ecology. J Dent Res (2010) 1.64
Demography, altruism, and the benefits of budding. J Evol Biol (2006) 1.61
Microbial biofilms in the human gastrointestinal tract. J Appl Microbiol (2007) 1.49
Analysis of infection thread development using Gfp- and DsRed-expressing Sinorhizobium meliloti. J Bacteriol (2002) 1.45
The costs and benefits of being a chimera. Proc Biol Sci (2002) 1.41
Flagellum mediates symbiosis. Science (2009) 1.41
A framework for multidimensional modelling of activity and structure of multispecies biofilms. Environ Microbiol (2005) 1.37
Population bottlenecks promote cooperation in bacterial biofilms. PLoS One (2007) 1.35
Interspecific competition and siderophore-mediated cooperation in Pseudomonas aeruginosa. ISME J (2007) 1.24
An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure. Ecol Lett (2010) 1.21
Quantification of social behavior in D. discoideum reveals complex fixed and facultative strategies. Curr Biol (2009) 1.20
Spatial structure leads to ecological breakdown and loss of diversity. Proc Biol Sci (2009) 1.15
Artificial selection of microbial ecosystems for 3-chloroaniline biodegradation. Environ Microbiol (2000) 1.12
Spatial organization of dual-species bacterial aggregates on leaf surfaces. Appl Environ Microbiol (2005) 1.11
Multi-scale individual-based model of microbial and bioconversion dynamics in aerobic granular sludge. Environ Sci Technol (2007) 1.06
Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas. Environ Microbiol (2009) 1.03
Environmental regulation in a network of simulated microbial ecosystems. Proc Natl Acad Sci U S A (2008) 1.02
Siderophore production and biofilm formation as linked social traits. ISME J (2009) 0.99
Happy birthday: 80 years of watching the evolutionary scenery. Science (2004) 0.97
Ecological competition favours cooperation in termite societies. Ecol Lett (2010) 0.95
Assessment of three-dimensional biofilm models through direct comparison with confocal microscopy imaging. Water Sci Technol (2004) 0.89
Species-level selection reduces selfishness through competitive exclusion. J Evol Biol (2007) 0.86
Cooperation: bridging ecology and sociobiology. Curr Biol (2007) 0.80
FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. Cell (2008) 3.76
Conflict resolution in insect societies. Annu Rev Entomol (2006) 3.41
The sociobiology of biofilms. FEMS Microbiol Rev (2008) 3.19
Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci U S A (2007) 2.79
A new eusocial vertebrate? Trends Ecol Evol (2005) 2.37
High relatedness maintains multicellular cooperation in a social amoeba by controlling cheater mutants. Proc Natl Acad Sci U S A (2007) 2.36
Emergence of spatial structure in cell groups and the evolution of cooperation. PLoS Comput Biol (2010) 2.35
The evolution of quorum sensing in bacterial biofilms. PLoS Biol (2008) 2.32
A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa. Mol Microbiol (2010) 1.91
Sucrose utilization in budding yeast as a model for the origin of undifferentiated multicellularity. PLoS Biol (2011) 1.73
Competition sensing: the social side of bacterial stress responses. Nat Rev Microbiol (2013) 1.64
The evolution of mutualism in gut microbiota via host epithelial selection. PLoS Biol (2012) 1.55
Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP. BMC Ecol (2006) 1.37
Cutting through the complexity of cell collectives. Proc Biol Sci (2013) 1.20
A gene necessary for reproductive suppression in termites. Science (2009) 1.19
Improved use of a public good selects for the evolution of undifferentiated multicellularity. Elife (2013) 1.16
Importance of positioning for microbial evolution. Proc Natl Acad Sci U S A (2014) 1.13
A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies. Am Nat (2011) 1.11
Cultural transmission can inhibit the evolution of altruistic helping. Am Nat (2008) 1.09
Sperm sociality: cooperation, altruism, and spite. PLoS Biol (2008) 1.08
Can cuticular lipids provide sufficient information for within-colony nepotism in wasps? Proc Biol Sci (2004) 1.06
Mucin biopolymers prevent bacterial aggregation by retaining cells in the free-swimming state. Curr Biol (2012) 1.03
Social evolution of spatial patterns in bacterial biofilms: when conflict drives disorder. Am Nat (2009) 1.02
Social and individual learning of helping in humans and other species. Trends Ecol Evol (2008) 0.96
The evolution of bacteriocin production in bacterial biofilms. Am Nat (2011) 0.96
Ecological competition favours cooperation in termite societies. Ecol Lett (2010) 0.95
Sociobiology: the Phoenix effect. Nature (2006) 0.85
High-resolution time series of Pseudomonas aeruginosa gene expression and rhamnolipid secretion through growth curve synchronization. BMC Microbiol (2011) 0.83
Are mistakes inevitable? Sex allocation specialization by workers can reduce the genetic information needed to assess queen mating frequency. J Theor Biol (2006) 0.80
Correction: Biofilm Formation As a Response to Ecological Competition. PLoS Biol (2015) 0.76
Mutually helping microbes can evolve by hitchhiking. Proc Natl Acad Sci U S A (2012) 0.75
Experimental evolution in biofilm populations. FEMS Microbiol Rev (2016) 0.75