Published in Comput Syst Bioinformatics Conf on January 01, 2008
Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34
Recent advances in B-cell epitope prediction methods. Immunome Res (2010) 1.26
Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J Biomed Biotechnol (2011) 1.05
Concept and application of a computational vaccinology workflow. Immunome Res (2010) 0.93
Prediction of IL4 inducing peptides. Clin Dev Immunol (2013) 0.92
Prediction of B-cell epitopes using evolutionary information and propensity scales. BMC Bioinformatics (2013) 0.91
Identification of a highly conserved H1 subtype-specific epitope with diagnostic potential in the hemagglutinin protein of influenza A virus. PLoS One (2011) 0.90
An assessment on epitope prediction methods for protozoa genomes. BMC Bioinformatics (2012) 0.87
Identification of B-cell epitopes in an antigen for inducing specific class of antibodies. Biol Direct (2013) 0.87
Epitope predictions indicate the presence of two distinct types of epitope-antibody-reactivities determined by epitope profiling of intravenous immunoglobulins. PLoS One (2013) 0.87
Identification of B cell epitopes of alcohol dehydrogenase allergen of Curvularia lunata. PLoS One (2011) 0.85
Protection of mice against Staphylococcus aureus infection by a recombinant protein ClfA-IsdB-Hlg as a vaccine candidate. Med Microbiol Immunol (2015) 0.80
Prevalence of collagen VII-specific autoantibodies in patients with autoimmune and inflammatory diseases. BMC Immunol (2012) 0.80
Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features. PLoS One (2016) 0.80
The self/nonself issue: A confrontation between proteomes. Self Nonself (2010) 0.79
In silico analysis for identifying potential vaccine candidates against Staphylococcus aureus. Clin Exp Vaccine Res (2015) 0.79
Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets. Biomed Res Int (2015) 0.79
Immunoinformatics and epitope prediction in the age of genomic medicine. Genome Med (2015) 0.79
Building classifier ensembles for B-cell epitope prediction. Methods Mol Biol (2014) 0.79
A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs. BMC Bioinformatics (2016) 0.77
The structure and dynamics of BmR1 protein from Brugia malayi: in silico approaches. Int J Mol Sci (2014) 0.76
Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull. PLoS One (2015) 0.76
Predicting linear B-cell epitopes using amino acid anchoring pair composition. BioData Min (2015) 0.76
Inadequate Reference Datasets Biased toward Short Non-epitopes Confound B-cell Epitope Prediction. J Biol Chem (2016) 0.75
Immunoinformatics Features Linked to Leishmania Vaccine Development: Data Integration of Experimental and In Silico Studies. Int J Mol Sci (2017) 0.75
A study of the mechanism of the chaperone-like function of an scFv of human creatine kinase by computer simulation. PLoS One (2013) 0.75
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. BMC Bioinformatics (2016) 0.75
A potent multivalent vaccine for modulation of immune system in atherosclerosis: an in silico approach. Clin Exp Vaccine Res (2016) 0.75
An Immuno-informatics driven Epitope study from the molecular interaction of JEV non-structural (NS) proteins with Ribophorin (RPN). Bioinformation (2014) 0.75
Insights from the predicted epitope similarity between Mycobacterium tuberculosis virulent factors and its human homologs. Bioinformation (2015) 0.75
In silico analysis of Shiga toxins (Stxs) to identify new potential vaccine targets for Shiga toxin-producing Escherichia coli. In Silico Pharmacol (2017) 0.75
The Membrane-Proximal Region of C-C Chemokine Receptor Type 5 Participates in the Infection of HIV-1. Front Immunol (2017) 0.75
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res (2000) 67.44
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol (1985) 5.73
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry (1986) 5.12
The spectrum kernel: a string kernel for SVM protein classification. Pac Symp Biocomput (2002) 4.90
Support vector machine approach for protein subcellular localization prediction. Bioinformatics (2001) 4.88
Improved method for predicting linear B-cell epitopes. Immunome Res (2006) 4.32
SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res (2003) 3.34
Mismatch string kernels for discriminative protein classification. Bioinformatics (2004) 3.27
Continuous and discontinuous protein antigenic determinants. Nature (1986) 3.26
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins (2006) 3.15
Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci (2004) 2.70
Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47
Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27
Protein homology detection using string alignment kernels. Bioinformatics (2004) 2.13
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids (2007) 2.06
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J Mol Recognit (2007) 2.02
BEPITOPE: predicting the location of continuous epitopes and patterns in proteins. J Mol Recognit (2003) 1.98
Predictive estimation of protein linear epitopes by using the program PEOPLE. Vaccine (1999) 1.90
Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol Lett (1993) 1.65
Predicting location of continuous epitopes in proteins from their primary structures. Methods Enzymol (1991) 1.48
Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores. BMC Bioinformatics (2006) 1.41
Machine learning approaches for prediction of linear B-cell epitopes on proteins. J Mol Recognit (2006) 1.41
Production and use of antibodies against synthetic peptides. J Immunol Methods (1986) 1.41
Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class. Proteins (1996) 1.22
Distinguishing enzyme structures from non-enzymes without alignments. J Mol Biol (2003) 1.18
PREDITOP: a program for antigenicity prediction. J Mol Graph (1993) 1.10
MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties. Immunogenetics (2006) 1.02
Characterisation of a protective linear B cell epitope against feline parvoviruses. Vaccine (2001) 0.98
Application of string kernels in protein sequence classification. Appl Bioinformatics (2005) 0.90
Immunoinformatics. Predicting immunogenicity in silico. Preface. Methods Mol Biol (2007) 0.90
Prediction of protein structural class by amino acid and polypeptide composition. Eur J Biochem (2002) 0.89
Protein structure and fold prediction using tree-augmented naive Bayesian classifier. Pac Symp Biocomput (2004) 0.80
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification. Mol Cell (2008) 11.24
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA). Nat Methods (2010) 8.86
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases. Proc Natl Acad Sci U S A (2010) 4.78
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nat Protoc (2006) 4.16
Mobile health technology evaluation: the mHealth evidence workshop. Am J Prev Med (2013) 3.90
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Res (2010) 3.59
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Res (2007) 3.47
Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47
An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins. Nucleic Acids Res (2008) 2.42
Prediction of RNA binding sites in proteins from amino acid sequence. RNA (2006) 2.28
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Nucleic Acids Res (2007) 2.02
A Framework for Learning from Distributed Data Using Sufficient Statistics and its Application to Learning Decision Trees. Int J Hybrid Intell Syst (2004) 1.99
Glycosylation site prediction using ensembles of Support Vector Machine classifiers. BMC Bioinformatics (2007) 1.93
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. Nucleic Acids Res (2008) 1.87
Predicting DNA-binding sites of proteins from amino acid sequence. BMC Bioinformatics (2006) 1.75
PRIDB: a Protein-RNA interface database. Nucleic Acids Res (2010) 1.33
A two-stage classifier for identification of protein-protein interface residues. Bioinformatics (2004) 1.32
Detection of gene orthology from gene co-expression and protein interaction networks. BMC Bioinformatics (2010) 1.32
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases. Plant Physiol (2011) 1.29
Recent advances in B-cell epitope prediction methods. Immunome Res (2010) 1.26
Predicting RNA-protein interactions using only sequence information. BMC Bioinformatics (2011) 1.25
Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art. BMC Bioinformatics (2012) 1.09
HomPPI: a class of sequence homology based protein-protein interface prediction methods. BMC Bioinformatics (2011) 1.05
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. BMC Bioinformatics (2007) 1.04
On evaluating MHC-II binding peptide prediction methods. PLoS One (2008) 1.04
Characterization of protein-protein interfaces. Protein J (2008) 1.02
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. BMC Bioinformatics (2004) 1.01
Identifying interaction sites in "recalcitrant" proteins: predicted protein and RNA binding sites in rev proteins of HIV-1 and EIAV agree with experimental data. Pac Symp Biocomput (2006) 0.98
ANEXdb: an integrated animal ANnotation and microarray EXpression database. Mamm Genome (2009) 0.97
Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences. BMC Bioinformatics (2010) 0.96
Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach. Neural Comput Appl (2004) 0.95
Efficient Markov Network Structure Discovery Using Independence Tests. J Artif Intell Res (2009) 0.94
Information Integration from Semantically Heterogeneous Biological Data Sources. Int Workshop databases Expert Syst Appl (2005) 0.93
Predicting protein-protein interface residues using local surface structural similarity. BMC Bioinformatics (2012) 0.93
Struct-NB: predicting protein-RNA binding sites using structural features. Int J Data Min Bioinform (2010) 0.92
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step. Proc Natl Acad Sci U S A (2011) 0.92
Characterization of functional domains of equine infectious anemia virus Rev suggests a bipartite RNA-binding domain. J Virol (2006) 0.88
DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction. Proteins (2013) 0.85
ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms. BMC Genomics (2011) 0.83
Semi-supervised prediction of protein subcellular localization using abstraction augmented Markov models. BMC Bioinformatics (2010) 0.81
Predicting MHC-II binding affinity using multiple instance regression. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.80
Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks. PLoS One (2013) 0.79
Template-based protein-protein docking exploiting pairwise interfacial residue restraints. Brief Bioinform (2016) 0.79
Building classifier ensembles for B-cell epitope prediction. Methods Mol Biol (2014) 0.79
Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV. PLoS One (2008) 0.79
Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches. Pac Symp Biocomput (2008) 0.78
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable. BMC Bioinformatics (2008) 0.78
Structural model of the Rev regulatory protein from equine infectious anemia virus. PLoS One (2009) 0.77
Molecular and biological characterization of equine infectious anemia virus Rev. Curr HIV Res (2010) 0.76
Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling. BMC Bioinformatics (2009) 0.75
B-cell ligand processing pathways detected by large-scale comparative analysis. Genomics Proteomics Bioinformatics (2012) 0.75
Abstraction Augmented Markov Models. Proc IEEE Int Conf Data Min (2010) 0.75
Codability criterion for picking proteinlike structures from random three-dimensional configurations. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.75
An incremental learning algorithm with confidence estimation for automated identification of NDE signals. IEEE Trans Ultrason Ferroelectr Freq Control (2004) 0.75