Predicting linear B-cell epitopes using amino acid anchoring pair composition.

PubWeight™: 0.76‹?›

🔗 View Article (PMC 4449562)

Published in BioData Min on April 29, 2015

Authors

Weike Shen1, Yuan Cao2, Lei Cha3, Xufei Zhang1,4, Xiaomin Ying3, Wei Zhang1, Kun Ge5, Wuju Li3, Li Zhong1,4

Author Affiliations

1: Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China.
2: Department of Laboratory Medicine General Hospital of Jinan Military Region, Jinan, Shandong 250031 China.
3: Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China.
4: Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA 91766 USA.
5: Centre Laboratory of Affiliated Hospital of Hebei University, Baoding, Hebei 071000 China.

Articles citing this

An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction. J Immunol Res (2016) 0.75

Articles cited by this

Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol Relat Areas Mol Biol (1978) 29.77

The diagnostic properties of rheumatoid arthritis antibodies recognizing a cyclic citrullinated peptide. Arthritis Rheum (2000) 8.64

Purposeful selection of variables in logistic regression. Source Code Biol Med (2008) 6.18

Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol (1985) 5.73

Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics (2002) 5.46

New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry (1986) 5.12

Continuous and discontinuous protein antigenic determinants. Nature (1986) 3.26

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins (2006) 3.15

Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci (2004) 2.70

Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47

N- and C-capping preferences for all 20 amino acids in alpha-helical peptides. Protein Sci (1995) 2.27

Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27

Confounder selection in environmental epidemiology: assessment of health effects of prenatal mercury exposure. Ann Epidemiol (2006) 2.22

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids (2007) 2.06

Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Res (2006) 1.70

The chemistry and mechanism of antibody binding to protein antigens. Adv Immunol (1988) 1.37

Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34

Predicting flexible length linear B-cell epitopes. Comput Syst Bioinformatics Conf (2008) 1.32

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction. BMC Genomics (2010) 1.12