Published in Dev Dyn on August 01, 2009
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains. Nat Methods (2012) 1.14
Precocious acquisition of neuroepithelial character in the eye field underlies the onset of eye morphogenesis. Dev Cell (2013) 0.93
Eph/Ephrin signalling maintains eye field segregation from adjacent neural plate territories during forebrain morphogenesis. Development (2013) 0.90
TigarB causes mitochondrial dysfunction and neuronal loss in PINK1 deficiency. Ann Neurol (2013) 0.85
Subdivisions of the adult zebrafish pallium based on molecular marker analysis. F1000Res (2014) 0.81
Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis. BMC Genomics (2014) 0.80
Reevaluating Emx gene phylogeny: homopolymeric amino acid tracts as a potential factor obscuring orthology signals in cyclostome genes. BMC Evol Biol (2015) 0.78
Dcc regulates asymmetric outgrowth of forebrain neurons in zebrafish. PLoS One (2012) 0.78
Opposing Shh and Fgf signals initiate nasotemporal patterning of the zebrafish retina. Development (2015) 0.77
Fgf16 is required for specification of GABAergic neurons and oligodendrocytes in the zebrafish forebrain. PLoS One (2014) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Stages of embryonic development of the zebrafish. Dev Dyn (1995) 42.72
Ensembl 2007. Nucleic Acids Res (2006) 20.10
p53 activation by knockdown technologies. PLoS Genet (2007) 6.85
I-SceI meganuclease mediates highly efficient transgenesis in fish. Mech Dev (2002) 3.62
A conserved family of elav-like genes in vertebrates. Proc Natl Acad Sci U S A (1995) 3.43
Cloning of the zebrafish krox-20 gene (krx-20) and its expression during hindbrain development. Nucleic Acids Res (1993) 3.31
Area patterning of the mammalian cortex. Neuron (2007) 3.12
The Wnt/beta-catenin pathway directs neuronal differentiation of cortical neural precursor cells. Development (2004) 2.94
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol (2007) 2.90
Combinatorial expression of three zebrafish genes related to distal-less: part of a homeobox gene code for the head. J Neurosci (1994) 2.88
fork head domain genes in zebrafish. Dev Genes Evol (1998) 2.58
EMX2 regulates sizes and positioning of the primary sensory and motor areas in neocortex by direct specification of cortical progenitors. Neuron (2004) 2.53
Dose-dependent functions of Fgf8 in regulating telencephalic patterning centers. Development (2006) 2.50
Establishment of the telencephalon during gastrulation by local antagonism of Wnt signaling. Neuron (2002) 2.42
Early steps in the development of the forebrain. Dev Cell (2004) 2.34
A homeobox gene essential for zebrafish notochord development. Nature (1995) 2.25
Lithium perturbation and goosecoid expression identify a dorsal specification pathway in the pregastrula zebrafish. Development (1993) 2.21
Area identity shifts in the early cerebral cortex of Emx2-/- mutant mice. Nat Neurosci (2000) 2.15
A mutation in the Gsk3-binding domain of zebrafish Masterblind/Axin1 leads to a fate transformation of telencephalon and eyes to diencephalon. Genes Dev (2001) 1.90
Coordinate expression of Fgf8, Otx2, Bmp4, and Shh in the rostral prosencephalon during development of the telencephalic and optic vesicles. Neuroscience (2001) 1.82
Distinct actions of Emx1, Emx2, and Pax6 in regulating the specification of areas in the developing neocortex. J Neurosci (2002) 1.81
A small population of anterior cells patterns the forebrain during zebrafish gastrulation. Nature (1998) 1.77
A dynamic gradient of Wnt signaling controls initiation of neurogenesis in the mammalian cortex and cellular specification in the hippocampus. Dev Biol (2007) 1.69
Ectopic Wnt signal determines the eyeless phenotype of zebrafish masterblind mutant. Development (2001) 1.67
sprouty4 acts in vivo as a feedback-induced antagonist of FGF signaling in zebrafish. Development (2001) 1.64
Distribution of prospective glutamatergic, glycinergic, and GABAergic neurons in embryonic and larval zebrafish. J Comp Neurol (2004) 1.58
Zebrafish contains two pax6 genes involved in eye development. Mech Dev (1998) 1.58
Teleostean and mammalian forebrains contrasted: Evidence from genes to behavior. J Comp Neurol (2004) 1.57
Emx1 and Emx2 functions in development of dorsal telencephalon. Development (1997) 1.56
Zebrafish wnt8 and wnt8b share a common activity but are involved in distinct developmental pathways. Development (1995) 1.56
The development of a simple scaffold of axon tracts in the brain of the embryonic zebrafish, Brachydanio rerio. Development (1990) 1.54
Severe mental retardation with breathing abnormalities (Pitt-Hopkins syndrome) is caused by haploinsufficiency of the neuronal bHLH transcription factor TCF4. Hum Mol Genet (2007) 1.52
Ace/Fgf8 is required for forebrain commissure formation and patterning of the telencephalon. Development (2000) 1.50
Emx2 patterns the neocortex by regulating FGF positional signaling. Nat Neurosci (2003) 1.47
Emx2 and Pax6 control regionalization of the pre-neuronogenic cortical primordium. Cereb Cortex (2002) 1.45
Expression of three Rx homeobox genes in embryonic and adult zebrafish. Mech Dev (1999) 1.34
A role for FGF-8 in the dorsoventral patterning of the zebrafish gastrula. Development (1997) 1.34
The olfactory placodes of the zebrafish form by convergence of cellular fields at the edge of the neural plate. Development (2000) 1.34
Emx2 promotes symmetric cell divisions and a multipotential fate in precursors from the cerebral cortex. Mol Cell Neurosci (2001) 1.32
Developmental regulation of islet-1 mRNA expression during neuronal differentiation in embryonic zebrafish. Dev Dyn (1994) 1.29
Neuroepithelial secondary organizers and cell fate specification in the developing brain. Brain Res Brain Res Rev (2003) 1.27
Wnt/Axin1/beta-catenin signaling regulates asymmetric nodal activation, elaboration, and concordance of CNS asymmetries. Neuron (2007) 1.23
Expression of two zebrafish orthodenticle-related genes in the embryonic brain. Mech Dev (1994) 1.23
Axonogenesis in the brain of zebrafish embryos. J Neurosci (1990) 1.21
Emx1 and Emx2 cooperate to regulate cortical size, lamination, neuronal differentiation, development of cortical efferents, and thalamocortical pathfinding. J Comp Neurol (2003) 1.21
Axonogenesis and morphogenesis in the embryonic zebrafish brain. J Neurosci (1992) 1.20
Specification of an anterior neuroectoderm patterning by Frizzled8a-mediated Wnt8b signalling during late gastrulation in zebrafish. Development (2002) 1.17
Patterning the zebrafish diencephalon by the conserved zinc-finger protein Fezl. Development (2007) 1.16
Zinc finger protein too few controls the development of monoaminergic neurons. Nat Neurosci (2003) 1.15
Analysis of the cell cycle in zebrafish embryos. Methods Cell Biol (2004) 1.11
Unique and combinatorial functions of Fgf3 and Fgf8 during zebrafish forebrain development. Development (2003) 1.11
Molecular cloning and developmental expression of foxP2 in zebrafish. Dev Dyn (2005) 1.10
Zebrafish Dkk1, induced by the pre-MBT Wnt signaling, is secreted from the prechordal plate and patterns the anterior neural plate. Mech Dev (2000) 1.10
Conserved and divergent patterns of Reelin expression in the zebrafish central nervous system. J Comp Neurol (2002) 1.04
Expression of the Ets transcription factors erm and pea3 in early zebrafish development. Mech Dev (1999) 1.04
Reduced hippocampal neurogenesis and skill reaching performance in adult Emx1 mutant mice. Exp Neurol (2007) 1.04
A mutually stimulating loop involving emx2 and canonical wnt signalling specifically promotes expansion of occipital cortex and hippocampus. Cereb Cortex (2005) 1.02
Differential expression of two zebrafish emx homeoprotein mRNAs in the developing brain. Neurosci Lett (1995) 1.01
Mutation of the Emx-1 homeobox gene disrupts the corpus callosum. Dev Biol (1996) 1.01
The lack of Emx2 causes impairment of Reelin signaling and defects of neuronal migration in the developing cerebral cortex. J Neurosci (2000) 1.01
The LIM class homeobox gene lim5: implied role in CNS patterning in Xenopus and zebrafish. Dev Biol (1995) 1.00
Maternal and embryonic expression of zebrafish lef1. Mech Dev (1999) 1.00
FGF signaling is required for {beta}-catenin-mediated induction of the zebrafish organizer. Development (2006) 1.00
Emx1 and Emx2 cooperate in initial phase of archipallium development. Mech Dev (2004) 1.00
Time-lapse microscopy of brain development. Methods Cell Biol (2004) 0.92
A transient population of neurons pioneers the olfactory pathway in the zebrafish. J Neurosci (1998) 0.92
Conservation of BF-1 expression in amphioxus and zebrafish suggests evolutionary ancestry of anterior cell types that contribute to the vertebrate telencephalon. Dev Genes Evol (1998) 0.91
Lhx5 promotes forebrain development and activates transcription of secreted Wnt antagonists. Development (2006) 0.90
Characterization of two frizzled8 homologues expressed in the embryonic shield and prechordal plate of zebrafish embryos. Mech Dev (1998) 0.89
Developmental expression of zebrafish emx1 during early embryogenesis. Gene Expr Patterns (2002) 0.87
The transcription factors Emx1 and Emx2 suppress choroid plexus development and promote neuroepithelial cell fate. Dev Biol (2006) 0.86
Overlapping expression of zebrafish T-brain-1 and eomesodermin during forebrain development. Mech Dev (2001) 0.85
Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences. Comput Appl Biosci (1996) 0.84
Structure and expression of three Emx genes in the dogfish Scyliorhinus canicula: functional and evolutionary implications. Dev Biol (2002) 0.83
Expression of FoxP2 during zebrafish development and in the adult brain. Int J Dev Biol (2006) 0.82
Normal corpus callosum in Emx1 mutant mice with C57BL/6 background. Biochem Biophys Res Commun (2000) 0.81
A class of neuroD-related basic helix-loop-helix transcription factors expressed in developing central nervous system in zebrafish. DNA Cell Biol (1999) 0.80
Emx2 is required for growth of the hippocampus but not for hippocampal field specification. J Neurosci (2000) 0.80
The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Res (2006) 7.66
The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucleic Acids Res (2003) 5.70
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res (2013) 5.66
Linking human diseases to animal models using ontology-based phenotype annotation. PLoS Biol (2009) 5.17
Pax8 and Pax2a function synergistically in otic specification, downstream of the Foxi1 and Dlx3b transcription factors. Development (2004) 4.48
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Res (2007) 4.30
National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. OMICS (2006) 3.96
Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol (2007) 3.68
ZFIN: enhancements and updates to the Zebrafish Model Organism Database. Nucleic Acids Res (2010) 3.02
A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development. Development (2005) 2.20
Phenex: ontological annotation of phenotypic diversity. PLoS One (2010) 2.13
The teleost anatomy ontology: anatomical representation for the genomics age. Syst Biol (2010) 2.07
The mitochondrial morphology protein Mdm10 functions in assembly of the preprotein translocase of the outer membrane. Dev Cell (2004) 1.98
A zebrafish sox9 gene required for cartilage morphogenesis. Development (2002) 1.94
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PLoS One (2010) 1.93
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database (Oxford) (2013) 1.92
PDZD7 is a modifier of retinal disease and a contributor to digenic Usher syndrome. J Clin Invest (2010) 1.85
Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. J Exp Zool B Mol Dev Evol (2007) 1.83
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. Nucleic Acids Res (2012) 1.69
The morphology proteins Mdm12/Mmm1 function in the major beta-barrel assembly pathway of mitochondria. EMBO J (2007) 1.58
MouseFinder: Candidate disease genes from mouse phenotype data. Hum Mutat (2012) 1.41
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish. Dis Model Mech (2012) 1.39
500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton. J Appl Ichthyol (2012) 1.38
Zebrafish as a model for caveolin-associated muscle disease; caveolin-3 is required for myofibril organization and muscle cell patterning. Hum Mol Genet (2005) 1.34
The translocator maintenance protein Tam41 is required for mitochondrial cardiolipin biosynthesis. J Cell Biol (2008) 1.32
Pineal-specific agouti protein regulates teleost background adaptation. Proc Natl Acad Sci U S A (2010) 1.27
Fgf3 and Fgf8 dependent and independent transcription factors are required for otic placode specification. Development (2003) 1.25
Zebrafish mosaic eyes is a novel FERM protein required for retinal lamination and retinal pigmented epithelial tight junction formation. Curr Biol (2004) 1.25
Mitochondrial protein sorting: differentiation of beta-barrel assembly by Tom7-mediated segregation of Mdm10. J Biol Chem (2006) 1.24
Zebrafish sp7:EGFP: a transgenic for studying otic vesicle formation, skeletogenesis, and bone regeneration. Genesis (2010) 1.23
Transmission, diagnosis, and recommendations for control of Pseudoloma neurophilia infections in laboratory zebrafish (Danio rerio) facilities. Comp Med (2011) 1.23
InterMOD: integrated data and tools for the unification of model organism research. Sci Rep (2013) 1.23
Anesthesia and euthanasia in zebrafish. ILAR J (2012) 1.23
MEPD: a resource for medaka gene expression patterns. Bioinformatics (2005) 1.22
A unified anatomy ontology of the vertebrate skeletal system. PLoS One (2012) 1.22
Inactivation of the mitochondrial heat shock protein zim17 leads to aggregation of matrix hsp70s followed by pleiotropic effects on morphology and protein biogenesis. J Mol Biol (2005) 1.16
pitx3 defines an equivalence domain for lens and anterior pituitary placode. Development (2005) 1.16
Hedgehog signaling is required for commitment but not initial induction of slow muscle precursors. Dev Biol (2004) 1.11
Characterization and management of asymptomatic Mycobacterium infections at the Zebrafish International Resource Center. J Am Assoc Lab Anim Sci (2011) 1.10
Harmonin (Ush1c) is required in zebrafish Müller glial cells for photoreceptor synaptic development and function. Dis Model Mech (2011) 1.06
Fgf-dependent otic induction requires competence provided by Foxi1 and Dlx3b. BMC Dev Biol (2007) 1.06
Mitochondrial preprotein translocases as dynamic molecular machines. FEMS Yeast Res (2006) 1.02
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J Biomed Semantics (2013) 1.02
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. J Biomed Semantics (2014) 1.01
Caveolin-1 is required for lateral line neuromast and notochord development. J Cell Sci (2007) 1.00
Multiple upstream modules regulate zebrafish myf5 expression. BMC Dev Biol (2007) 0.98
Signaling networks that regulate muscle development: lessons from zebrafish. Dev Growth Differ (2007) 0.98
Mitochondrial morphology and protein import--a tight connection? Biochim Biophys Acta (2006) 0.97
Combined haploid and insertional mutation screen in the zebrafish. Genesis (2004) 0.97
Mutation of POC1B in a severe syndromic retinal ciliopathy. Hum Mutat (2014) 0.97
Changes in retinoic acid signaling alter otic patterning. Development (2007) 0.97
Hhip regulates zebrafish muscle development by both sequestering Hedgehog and modulating localization of Smoothened. Dev Biol (2006) 0.94
The zebrafish: cellular and developmental biology, part A. Preface. Methods Cell Biol (2010) 0.93
Sparc (Osteonectin) functions in morphogenesis of the pharyngeal skeleton and inner ear. Matrix Biol (2008) 0.92
Lbx2 regulates formation of myofibrils. BMC Dev Biol (2009) 0.90
Equivalent progenitor cells in the zebrafish anterior preplacodal field give rise to adenohypophysis, lens, and olfactory placodes. Semin Cell Dev Biol (2007) 0.90
Lhx5 promotes forebrain development and activates transcription of secreted Wnt antagonists. Development (2006) 0.90
GSD: a genetic screen database. Mech Dev (2004) 0.87
Smarcd3 regulates the timing of zebrafish myogenesis onset. J Biol Chem (2007) 0.86
Notch signaling regulates endocrine cell specification in the zebrafish anterior pituitary. Dev Biol (2008) 0.85
Cryopreservation and in vitro fertilization at the zebrafish international resource center. Methods Mol Biol (2009) 0.83
Complexes of Usher proteins preassemble at the endoplasmic reticulum and are required for trafficking and ER homeostasis. Dis Model Mech (2014) 0.81
Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Gene Expr Patterns (2009) 0.80
The cone-dominant retina and the inner ear of zebrafish express the ortholog of CLRN1, the causative gene of human Usher syndrome type 3A. Gene Expr Patterns (2013) 0.80
Dcc regulates asymmetric outgrowth of forebrain neurons in zebrafish. PLoS One (2012) 0.78
Data extraction, transformation, and dissemination through ZFIN. Methods Cell Biol (2011) 0.78
The zebrafish. Preface. Methods Cell Biol (2011) 0.76