Published in Nat Methods on June 17, 2012
Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior. Neuron (2014) 1.33
Automated processing of zebrafish imaging data: a survey. Zebrafish (2013) 1.14
Whole-body gene expression pattern registration in Platynereis larvae. Evodevo (2012) 1.06
Whole-brain activity mapping onto a zebrafish brain atlas. Nat Methods (2015) 0.97
A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis. PLoS Comput Biol (2014) 0.90
Integrating anatomy and function for zebrafish circuit analysis. Front Neural Circuits (2013) 0.86
In vivo three-dimensional characterization of the adult zebrafish brain using a 1325 nm spectral-domain optical coherence tomography system with the 27 frame/s video rate. Biomed Opt Express (2015) 0.83
Generation and application of signaling pathway reporter lines in zebrafish. Mol Genet Genomics (2013) 0.83
Light microscopy applications in systems biology: opportunities and challenges. Cell Commun Signal (2013) 0.80
A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Front Neural Circuits (2015) 0.79
Object-based representation and analysis of light and electron microscopic volume data using Blender. BMC Bioinformatics (2015) 0.78
Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways. Curr Biol (2016) 0.78
Optical tomography complements light sheet microscopy for in toto imaging of zebrafish development. Development (2015) 0.77
Function Over Form: Modeling Groups of Inherited Neurological Conditions in Zebrafish. Front Mol Neurosci (2016) 0.76
Animal microsurgery using microfluidics. Curr Opin Biotechnol (2013) 0.76
Brain on the stage - spotlight on nervous system development in zebrafish: EMBO practical course, KIT, Sept. 2013. Neural Dev (2013) 0.75
The rise of photoresponsive protein technologies applications in vivo: a spotlight on zebrafish developmental and cell biology. F1000Res (2017) 0.75
Variational attenuation correction in two-view confocal microscopy. BMC Bioinformatics (2013) 0.75
High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. Gigascience (2017) 0.75
Genome-wide atlas of gene expression in the adult mouse brain. Nature (2006) 28.02
Deep tissue two-photon microscopy. Nat Methods (2005) 14.95
Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science (2004) 13.77
Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A (2004) 8.65
Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nat Neurosci (2011) 7.37
A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods (2009) 5.29
BrainAligner: 3D registration atlases of Drosophila brains. Nat Methods (2011) 4.92
Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution. Curr Biol (2010) 4.04
Visualization of image data from cells to organisms. Nat Methods (2010) 3.66
Visualization of cranial motor neurons in live transgenic zebrafish expressing green fluorescent protein under the control of the islet-1 promoter/enhancer. J Neurosci (2000) 3.24
A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. J Neurosci (2000) 2.98
Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening. Methods Cell Biol (2004) 2.88
Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish. J Neurosci (2006) 2.86
In vivo protein trapping produces a functional expression codex of the vertebrate proteome. Nat Methods (2011) 2.85
Active suppression of interneuron programs within developing motor neurons revealed by analysis of homeodomain factor HB9. Neuron (1999) 2.83
The axonal glycoprotein TAG-1 is an immunoglobulin superfamily member with neurite outgrowth-promoting activity. Cell (1990) 2.36
Neuromuscular synapses can form in vivo by incorporation of initially aneural postsynaptic specializations. Development (2005) 2.30
Migration and function of a glial subtype in the vertebrate peripheral nervous system. Neuron (2002) 2.24
Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell (2009) 2.16
Neural cell fate analysis in zebrafish using olig2 BAC transgenics. Methods Cell Sci (2003) 2.14
Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo. Mech Dev (2003) 1.79
Dense image registration through MRFs and efficient linear programming. Med Image Anal (2008) 1.67
Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nat Methods (2009) 1.61
XuvTools: free, fast and reliable stitching of large 3D datasets. J Microsc (2009) 1.59
Distribution of prospective glutamatergic, glycinergic, and GABAergic neurons in embryonic and larval zebrafish. J Comp Neurol (2004) 1.58
Orthopedia homeodomain protein is essential for diencephalic dopaminergic neuron development. Curr Biol (2007) 1.58
Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems. Nat Commun (2011) 1.57
Dopamine transporter expression distinguishes dopaminergic neurons from other catecholaminergic neurons in the developing zebrafish embryo. Mech Dev (2001) 1.54
Function and regulation of zebrafish nkx2.2a during development of pancreatic islet and ducts. Dev Biol (2007) 1.38
Arcuate nucleus expression of NKX2.1 and DLX and lineages expressing these transcription factors in neuropeptide Y(+), proopiomelanocortin(+), and tyrosine hydroxylase(+) neurons in neonatal and adult mice. J Comp Neurol (2009) 1.32
Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish. Dev Biol (2007) 1.26
Noradrenergic neurons in the zebrafish hindbrain are induced by retinoic acid and require tfap2a for expression of the neurotransmitter phenotype. Development (2003) 1.18
Expression and function of nr4a2, lmx1b, and pitx3 in zebrafish dopaminergic and noradrenergic neuronal development. BMC Dev Biol (2007) 1.08
Adaptive correction technique for 3D reconstruction of fluorescence microscopy images. Microsc Res Tech (2008) 1.01
Harmonic filters for 3D multichannel data: rotation invariant detection of mitoses in colorectal cancer. IEEE Trans Med Imaging (2010) 1.00
Attenuation correction in confocal laser microscopes: a novel two-view approach. J Microsc (2003) 0.95
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators. IEEE Trans Pattern Anal Mach Intell (2012) 0.94
Emx3 is required for the differentiation of dorsal telencephalic neurons. Dev Dyn (2009) 0.89
Spatially and temporally-restricted expression of two T-box genes during zebrafish embryogenesis. Mech Dev (1999) 0.78
Inversin, the gene product mutated in nephronophthisis type II, functions as a molecular switch between Wnt signaling pathways. Nat Genet (2005) 6.67
Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior. Nat Genet (2010) 6.49
Quantum dots versus organic dyes as fluorescent labels. Nat Methods (2008) 5.36
Ultrafast graphene photodetector. Nat Nanotechnol (2009) 4.22
Autosomal dominant cerebellar ataxias: clinical features, genetics, and pathogenesis. Lancet Neurol (2004) 3.83
Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics (2008) 3.78
Improving gene set analysis of microarray data by SAM-GS. BMC Bioinformatics (2007) 3.68
Primary cilia regulate mTORC1 activity and cell size through Lkb1. Nat Cell Biol (2010) 3.55
Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell (2004) 3.31
CORUM: the comprehensive resource of mammalian protein complexes. Nucleic Acids Res (2007) 3.23
The draft genome of a diploid cotton Gossypium raimondii. Nat Genet (2012) 3.18
TRPP2 and TRPV4 form a polymodal sensory channel complex. J Cell Biol (2008) 2.88
Inflammatory reactions and severe neutropenia in mice lacking the transcriptional repressor Gfi1. Nat Genet (2002) 2.87
Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency. Nat Genet (2010) 2.81
Position paper for the organization of extracorporeal membrane oxygenation programs for acute respiratory failure in adult patients. Am J Respir Crit Care Med (2014) 2.78
Neurologic Injury in Adults Supported With Veno-Venous Extracorporeal Membrane Oxygenation for Respiratory Failure: Findings From the Extracorporeal Life Support Organization Database. Crit Care Med (2017) 2.67
Reporting in randomized trials published in International Journal of Cardiology in 2011 compared to the recommendations made in CONSORT 2010. Int J Cardiol (2012) 2.63
Knockdown of transactive response DNA-binding protein (TDP-43) downregulates histone deacetylase 6. EMBO J (2009) 2.37
Characteristics of the novel interleukin family biomarker ST2 in patients with acute heart failure. J Am Coll Cardiol (2008) 2.36
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. Nucleic Acids Res (2008) 2.33
Photocurrent imaging and efficient photon detection in a graphene transistor. Nano Lett (2009) 2.20
Deep brain photoreceptors control light-seeking behavior in zebrafish larvae. Curr Biol (2012) 2.05
Extracorporeal membrane oxygenation in severe trauma patients with bleeding shock. Resuscitation (2010) 2.01
Mechanical induction of lateral root initiation in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 1.98
The PEDANT genome database in 2005. Nucleic Acids Res (2005) 1.88
Extracorporeal circulatory systems as a bridge to lung transplantation at remote transplant centers. Ann Thorac Surg (2011) 1.81
Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm. Nat Genet (2010) 1.79
Level set segmentation with multiple regions. IEEE Trans Image Process (2006) 1.76
Gene-set analysis and reduction. Brief Bioinform (2008) 1.71
Incremental value of biomarkers to clinical variables for mortality prediction in acutely decompensated heart failure: the Multinational Observational Cohort on Acute Heart Failure (MOCA) study. Int J Cardiol (2013) 1.69
Pou5f1-dependent EGF expression controls E-cadherin endocytosis, cell adhesion, and zebrafish epiboly movements. Dev Cell (2013) 1.69
The von Hippel-Lindau tumor suppressor protein controls ciliogenesis by orienting microtubule growth. J Cell Biol (2006) 1.66
Transgenic rat model of Huntington's disease. Hum Mol Genet (2003) 1.66
Analytical and clinical evaluation of a novel high-sensitivity assay for measurement of soluble ST2 in human plasma--the Presage ST2 assay. Clin Chim Acta (2009) 1.65
RBP4 disrupts vitamin A uptake homeostasis in a STRA6-deficient animal model for Matthew-Wood syndrome. Cell Metab (2008) 1.64
Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension. Nat Genet (2012) 1.62
Spatial memory and animal movement. Ecol Lett (2013) 1.62
Evolutionary conserved role of ptf1a in the specification of exocrine pancreatic fates. Dev Biol (2004) 1.60
Case-fatality ratio and effectiveness of ribavirin therapy among hospitalized patients in china who had severe fever with thrombocytopenia syndrome. Clin Infect Dis (2013) 1.58
Orthopedia homeodomain protein is essential for diencephalic dopaminergic neuron development. Curr Biol (2007) 1.58
Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems. Nat Commun (2011) 1.57
Teleostean and mammalian forebrains contrasted: Evidence from genes to behavior. J Comp Neurol (2004) 1.57
Association between elevated blood glucose and outcome in acute heart failure: results from an international observational cohort. J Am Coll Cardiol (2013) 1.55
Severe mental retardation with breathing abnormalities (Pitt-Hopkins syndrome) is caused by haploinsufficiency of the neuronal bHLH transcription factor TCF4. Hum Mol Genet (2007) 1.52
4D phase contrast MRI at 3 T: effect of standard and blood-pool contrast agents on SNR, PC-MRA, and blood flow visualization. Magn Reson Med (2010) 1.49
Seasonal dynamics of the plant community and soil seed bank along a successional gradient in a subalpine meadow on the Tibetan Plateau. PLoS One (2013) 1.49
vglut2 and gad expression reveal distinct patterns of dual GABAergic versus glutamatergic cotransmitter phenotypes of dopaminergic and noradrenergic neurons in the zebrafish brain. J Comp Neurol (2014) 1.48
Microcavity-integrated graphene photodetector. Nano Lett (2012) 1.48
Heteromeric KCNE2/KCNQ1 potassium channels in the luminal membrane of gastric parietal cells. J Physiol (2004) 1.46
Accumulation of nanocarriers in the ovary: a neglected toxicity risk? J Control Release (2012) 1.43
Retracted Stress associated with group living in a long-lived bird. Biol Lett (2011) 1.41
Neural crest survival and differentiation in zebrafish depends on mont blanc/tfap2a gene function. Development (2004) 1.41
Pumpless extracorporeal interventional lung assist in patients with acute respiratory distress syndrome: a prospective pilot study. Crit Care (2009) 1.40
Impact of Acute Kidney Injury on Outcome in Patients With Severe Acute Respiratory Failure Receiving Extracorporeal Membrane Oxygenation. Crit Care Med (2015) 1.39
Meta-analysis of everolimus-eluting stent as compared to sirolimus-eluting stent in patients undergoing percutaneous coronary interventions: an update. Int J Cardiol (2011) 1.39
Mapping spread and risk of avian influenza A (H7N9) in China. Sci Rep (2013) 1.38
Chemotaxonomic identification of single bacteria by micro-Raman spectroscopy: application to clean-room-relevant biological contaminations. Appl Environ Microbiol (2005) 1.35
Suppression of growth, migration and invasion of highly-metastatic human breast cancer cells by berbamine and its molecular mechanisms of action. Mol Cancer (2009) 1.35
Nuclear localization of ataxin-3 is required for the manifestation of symptoms in SCA3: in vivo evidence. J Neurosci (2007) 1.34
Effects of matrine against the growth of human lung cancer and hepatoma cells as well as lung cancer cell migration. Cytotechnology (2009) 1.34
TLR4-induced IFN-gamma production increases TLR2 sensitivity and drives Gram-negative sepsis in mice. J Exp Med (2008) 1.32
Will my protein crystallize? A sequence-based predictor. Proteins (2006) 1.30
Assessment of fat-specific protein 27 in the adipocyte lineage suggests a dual role for FSP27 in adipocyte metabolism and cell death. Am J Physiol Endocrinol Metab (2008) 1.28
Neurodegeneration and motor dysfunction in a conditional model of Parkinson's disease. J Neurosci (2008) 1.28
Provitamin A conversion to retinal via the beta,beta-carotene-15,15'-oxygenase (bcox) is essential for pattern formation and differentiation during zebrafish embryogenesis. Development (2003) 1.28
Association between chromosome 9p21 variants and the ankle-brachial index identified by a meta-analysis of 21 genome-wide association studies. Circ Cardiovasc Genet (2011) 1.26
High levels of the onco-protein Gfi-1 accelerate T-cell proliferation and inhibit activation induced T-cell death in Jurkat T-cells. Oncogene (2002) 1.26
Human infection with Candidatus Neoehrlichia mikurensis, China. Emerg Infect Dis (2012) 1.26
Pro-A-type natriuretic peptide and pro-adrenomedullin predict progression of chronic kidney disease: the MMKD Study. Kidney Int (2008) 1.26
Inhibition of mTORC1 by astrin and stress granules prevents apoptosis in cancer cells. Cell (2013) 1.25
Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascade. Curr Biol (2004) 1.23
Serum- and glucocorticoid-inducible kinase 1 (SGK1) mediates glucocorticoid-induced inhibition of insulin secretion. Diabetes (2005) 1.23
Dissociation between overt and unconscious face processing in fusiform face area. Neuroimage (2004) 1.23
Veno-venous extracorporeal CO2 removal for the treatment of severe respiratory acidosis: pathophysiological and technical considerations. Crit Care (2014) 1.23
BMP signalling regulates anteroposterior endoderm patterning in zebrafish. Mech Dev (2002) 1.23
Photovoltaic effect in an electrically tunable van der Waals heterojunction. Nano Lett (2014) 1.22
TRPP2 channels regulate apoptosis through the Ca2+ concentration in the endoplasmic reticulum. EMBO J (2009) 1.21
Matrine suppresses breast cancer cell proliferation and invasion via VEGF-Akt-NF-kappaB signaling. Cytotechnology (2009) 1.21
PEDANT genome database: 10 years online. Nucleic Acids Res (2006) 1.20
Differential role of Rab proteins in ciliary trafficking: Rab23 regulates smoothened levels. J Cell Sci (2010) 1.20
Gastric lactobezoar - a rare disorder? Orphanet J Rare Dis (2012) 1.19
Extracorporeal circulatory systems in the interhospital transfer of critically ill patients: experience of a single institution. Ann Saudi Med (2009) 1.19
Fast and selective ammonia transport by aquaporin-8. J Biol Chem (2006) 1.18
Noradrenergic neurons in the zebrafish hindbrain are induced by retinoic acid and require tfap2a for expression of the neurotransmitter phenotype. Development (2003) 1.18
Pou5f1 transcription factor controls zygotic gene activation in vertebrates. Science (2013) 1.17
Molecular modeling studies of N-substituted pyrrole derivatives--potential HIV-1 gp41 inhibitors. Bioorg Med Chem (2008) 1.16
From fine-scale foraging to home ranges: a semivariance approach to identifying movement modes across spatiotemporal scales. Am Nat (2014) 1.15
Apolipoprotein(a) genetic sequence variants associated with systemic atherosclerosis and coronary atherosclerotic burden but not with venous thromboembolism. J Am Coll Cardiol (2012) 1.14
Automated processing of zebrafish imaging data: a survey. Zebrafish (2013) 1.14
Netrin-DCC, Robo-Slit, and heparan sulfate proteoglycans coordinate lateral positioning of longitudinal dopaminergic diencephalospinal axons. J Neurosci (2009) 1.13
Usefulness of soluble concentrations of interleukin family member ST2 as predictor of mortality in patients with acutely decompensated heart failure relative to left ventricular ejection fraction. Am J Cardiol (2011) 1.12
Evolutionary and molecular analysis of the emergent severe fever with thrombocytopenia syndrome virus. Epidemics (2012) 1.10
Ebola Virus Outbreak Investigation, Sierra Leone, September 28-November 11, 2014. Emerg Infect Dis (2015) 1.10
A biological evaluation of six gene set analysis methods for identification of differentially expressed pathways in microarray data. Cancer Inform (2008) 1.09
Small molecule insulin mimetics reduce food intake and body weight and prevent development of obesity. Nat Med (2002) 1.09
Expression and function of nr4a2, lmx1b, and pitx3 in zebrafish dopaminergic and noradrenergic neuronal development. BMC Dev Biol (2007) 1.08