Published in Science on August 27, 2009
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet (2010) 5.20
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol (2011) 4.84
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol (2013) 3.41
SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing. PLoS One (2013) 2.36
Population genetic inference from genomic sequence variation. Genome Res (2010) 2.29
The genetics of monarch butterfly migration and warning colouration. Nature (2014) 2.16
Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat. Cell (2013) 1.53
The next-generation sequencing technology and application. Protein Cell (2010) 1.52
Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression. PLoS One (2015) 1.48
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics (2013) 1.46
Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification. Gigascience (2013) 1.42
Quantifying population genetic differentiation from next-generation sequencing data. Genetics (2013) 1.41
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity. Nat Genet (2013) 1.34
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation. Genome Res (2013) 1.12
Advances in genome editing technology and its promising application in evolutionary and ecological studies. Gigascience (2014) 1.11
The silkworm Green b locus encodes a quercetin 5-O-glucosyltransferase that produces green cocoons with UV-shielding properties. Proc Natl Acad Sci U S A (2010) 1.04
Exploring natural silk protein sericin for regenerative medicine: an injectable, photoluminescent, cell-adhesive 3D hydrogel. Sci Rep (2014) 1.03
Protein tyrosine phosphatase-induced hyperactivity is a conserved strategy of a subset of baculoviruses to manipulate lepidopteran host behavior. PLoS One (2012) 1.03
Are edible insects more or less 'healthy' than commonly consumed meats? A comparison using two nutrient profiling models developed to combat over- and undernutrition. Eur J Clin Nutr (2015) 1.00
Ras1(CA) overexpression in the posterior silk gland improves silk yield. Cell Res (2011) 0.98
Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication. Sci Rep (2014) 0.97
Transcriptome analysis of the silkworm (Bombyx mori) by high-throughput RNA sequencing. PLoS One (2012) 0.96
Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data. Front Genet (2012) 0.94
Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops. Genome Biol (2014) 0.94
Identification and evolution of the silkworm helitrons and their contribution to transcripts. DNA Res (2013) 0.94
Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries. BMC Genomics (2011) 0.91
Functional specificity of sex pheromone receptors in the cotton bollworm Helicoverpa armigera. PLoS One (2013) 0.91
Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes. BMC Evol Biol (2010) 0.91
Horizontal gene transfer in silkworm, Bombyx mori. BMC Genomics (2011) 0.90
Resistance to BmNPV via overexpression of an exogenous gene controlled by an inducible promoter and enhancer in transgenic silkworm, Bombyx mori. PLoS One (2012) 0.89
Positive selection drives faster-Z evolution in silkmoths. Evolution (2014) 0.89
Diversity in copy number and structure of a silkworm morphogenetic gene as a result of domestication. Genetics (2011) 0.89
Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. Plant Cell (2014) 0.89
Chinese bioscience: The sequence factory. Nature (2010) 0.87
Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome. RNA (2012) 0.86
Detecting SNPs underlying domestication-related traits in soybean. BMC Plant Biol (2014) 0.86
Heritable genome editing with CRISPR/Cas9 in the silkworm, Bombyx mori. PLoS One (2014) 0.86
Comparative analysis of the silk gland transcriptomes between the domestic and wild silkworms. BMC Genomics (2015) 0.85
High‑efficiency system for construction and evaluation of customized TALENs for silkworm genome editing. Mol Genet Genomics (2013) 0.85
Analysis of codon usage bias of mitochondrial genome in Bombyx mori and its relation to evolution. BMC Evol Biol (2014) 0.85
Alanine scan of core positions in ubiquitin reveals links between dynamics, stability, and function. J Mol Biol (2013) 0.84
Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication. BMC Genomics (2015) 0.83
Retrogenes moved out of the z chromosome in the silkworm. J Mol Evol (2012) 0.83
CD36 homolog divergence is responsible for the selectivity of carotenoid species migration to the silk gland of the silkworm Bombyx mori. J Lipid Res (2012) 0.83
FLP recombinase-mediated site-specific recombination in silkworm, Bombyx mori. PLoS One (2012) 0.82
An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize. BMC Genomics (2015) 0.82
Nucleotide diversity and selection signature in the domesticated silkworm, Bombyx mori, and wild silkworm, Bombyx mandarina. J Insect Sci (2011) 0.82
Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method. Sci Rep (2015) 0.82
Genetic variants and signatures of selective sweep of Hanwoo population (Korean native cattle). BMB Rep (2013) 0.81
Impacts of nucleotide fixation during soybean domestication and improvement. BMC Plant Biol (2015) 0.81
A proteomic view on the developmental transfer of homologous 30 kDa lipoproteins from peripheral fat body to perivisceral fat body via hemolymph in silkworm, Bombyx mori. BMC Biochem (2012) 0.81
On the prospect of identifying adaptive loci in recently bottlenecked populations. PLoS One (2014) 0.81
Remobilizing deleted piggyBac vector post-integration for transgene stability in silkworm. Mol Genet Genomics (2015) 0.80
Domestication and the mitochondrial genome: comparing patterns and rates of molecular evolution in domesticated mammals and birds and their wild relatives. Genome Biol Evol (2014) 0.80
Transcriptomic analysis of differentially expressed genes in the Ras1(CA)-overexpressed and wildtype posterior silk glands. BMC Genomics (2014) 0.80
Genomic variants of genes associated with three horticultural traits in apple revealed by genome re-sequencing. Hortic Res (2014) 0.80
Transcriptome sequencing and positive selected genes analysis of Bombyx mandarina. PLoS One (2015) 0.80
Molecular phylogeny, laboratory rearing, and karyotype of the bombycid moth, Trilocha varians. J Insect Sci (2012) 0.80
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication. BMC Genomics (2013) 0.80
A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics (2012) 0.79
Anatomical and functional analysis of domestication effects on the olfactory system of the silkmoth Bombyx mori. Proc Biol Sci (2013) 0.79
Signatures of selection in tilapia revealed by whole genome resequencing. Sci Rep (2015) 0.79
Application of high-resolution DNA melting for genotyping in lepidopteran non-model species: Ostrinia furnacalis (Crambidae). PLoS One (2012) 0.79
Genome-wide identification and characterization of Fox genes in the silkworm, Bombyx mori. Funct Integr Genomics (2015) 0.78
bmo-miR-0001 and bmo-miR-0015 down-regulate expression of Bombyx mori fibroin light chain gene in vitro. J Zhejiang Univ Sci B (2016) 0.78
Lipid transfer particle from the silkworm, Bombyx mori, is a novel member of the apoB/large lipid transfer protein family. J Lipid Res (2013) 0.78
Development of genome-wide insertion and deletion markers for maize, based on next-generation sequencing data. BMC Genomics (2015) 0.78
Population genetic studies in the genomic sequencing era. Dongwuxue Yanjiu (2015) 0.77
Genome-wide association study of 8 carcass traits in Jinghai Yellow chickens using specific-locus amplified fragment sequencing technology. Poult Sci (2016) 0.77
Demographic history and gene flow during silkworm domestication. BMC Evol Biol (2014) 0.77
Applications and challenges of next-generation sequencing in Brassica species. Planta (2013) 0.77
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. BMC Genomics (2017) 0.76
2A self-cleaving peptide-based multi-gene expression system in the silkworm Bombyx mori. Sci Rep (2015) 0.76
Functional Loss of Bmsei Causes Thermosensitive Epilepsy in Contractile Mutant Silkworm, Bombyx mori. Sci Rep (2015) 0.76
Identification of a new Sprouty protein responsible for the inhibition of the Bombyx mori nucleopolyhedrovirus reproduction. PLoS One (2014) 0.76
A review of the implications of heterozygosity and inbreeding on germplasm biodiversity and its conservation in the silkworm, Bombyx mori. J Insect Sci (2011) 0.75
The Structural Variation Is Associated with the Embryonic Lethality of a Novel Red Egg Mutant Fuyin-lre of Silkworm, Bombyx mori. PLoS One (2015) 0.75
Proteins in the Cocoon of Silkworm Inhibit the Growth of Beauveria bassiana. PLoS One (2016) 0.75
Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems. Nucleic Acids Res (2015) 0.75
Homeodomain Protein Scr Regulates the Transcription of Genes Involved in Juvenile Hormone Biosynthesis in the Silkworm. Int J Mol Sci (2015) 0.75
Genome-Wide Identification and Characterization of Carboxypeptidase Genes in Silkworm (Bombyx mori). Int J Mol Sci (2016) 0.75
Functional study on the mutations in the silkworm (Bombyx mori) acetylcholinesterase type 1 gene (ace1) and its recombinant proteins. Mol Biol Rep (2013) 0.75
Transcriptomic Analysis of Resistant and Susceptible Bombyx mori Strains Following BmNPV Infection Provides Insights into the Antiviral Mechanisms. Int J Genomics (2016) 0.75
Detecting recent selective sweeps while controlling for mutation rate and background selection. Mol Ecol (2015) 0.75
Bombyx mori transcription factors: genome-wide identification, expression profiles and response to pathogens by microarray analysis. J Insect Sci (2012) 0.75
High nucleotide diversity and limited linkage disequilibrium in Helicoverpa armigera facilitates the detection of a selective sweep. Heredity (Edinb) (2015) 0.75
Identification and characterization of two novel bla(KLUC) resistance genes through large-scale resistance plasmids sequencing. PLoS One (2012) 0.75
Genome-wide patterns of genetic variation among silkworms. Mol Genet Genomics (2015) 0.75
Changes in 30K protein synthesis during delayed degeneration of the silk gland by a caspase-dependent pathway in a Bombyx (silkworm) mutant. J Comp Physiol B (2016) 0.75
Beans (Phaseolus ssp.) as a Model for Understanding Crop Evolution. Front Plant Sci (2017) 0.75
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
On the number of segregating sites in genetical models without recombination. Theor Popul Biol (1975) 60.96
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
SNP detection for massively parallel whole-genome resequencing. Genome Res (2009) 15.96
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
Molecular signatures of natural selection. Annu Rev Genet (2005) 7.51
Linkage disequilibrium--understanding the evolutionary past and mapping the medical future. Nat Rev Genet (2008) 7.08
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem Mol Biol (2008) 4.13
The genetics and genomics of the silkworm, Bombyx mori. Annu Rev Entomol (2005) 2.92
Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Dev Cell (2003) 2.63
Production of human alpha-interferon in silkworm using a baculovirus vector. Nature (1985) 2.37
Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol (2007) 2.21
Expression of foreign genes in insects using baculovirus vectors. Annu Rev Entomol (1989) 2.01
A single mutation alters production and discrimination of Drosophila sex pheromones. Proc Biol Sci (2005) 1.45
Fork head and Sage maintain a uniform and patent salivary gland lumen through regulation of two downstream target genes, PH4alphaSG1 and PH4alphaSG2. Development (2006) 1.18
Silk gland factor-1 involved in the regulation of Bombyx sericin-1 gene contains fork head motif. J Biol Chem (1995) 1.12
The Drosophila Bruton's tyrosine kinase (Btk) homolog is required for adult survival and male genital formation. Mol Cell Biol (1999) 1.06
Genetic diversity among silkworm (Bombyx mori L., Lep., Bombycidae) germplasms revealed by microsatellites. Genome (2005) 0.97
Paramyosin phosphorylation site disruption affects indirect flight muscle stiffness and power generation in Drosophila melanogaster. Proc Natl Acad Sci U S A (2005) 0.97
Differential binding of the Bombyx silk gland-specific factor SGFB to its target DNA sequence drives posterior-cell-restricted expression. Mol Cell Biol (1997) 0.93
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature (2009) 24.41
Enterotypes of the human gut microbiome. Nature (2011) 24.36
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience (2012) 20.89
Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res (2008) 20.59
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
SNP detection for massively parallel whole-genome resequencing. Genome Res (2009) 15.96
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling. Nature (2004) 12.41
A systematic survey of loss-of-function variants in human protein-coding genes. Science (2012) 12.25
Adherence to antiretroviral therapy in sub-Saharan Africa and North America: a meta-analysis. JAMA (2006) 11.71
A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68
Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27
Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol (2005) 11.26
Natural selection on protein-coding genes in the human genome. Nature (2005) 10.84
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science (2003) 9.20
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One (2007) 9.17
Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet (2008) 8.92
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res (2006) 8.83
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol (2005) 8.74
Adherence to HAART: a systematic review of developed and developing nation patient-reported barriers and facilitators. PLoS Med (2006) 8.57
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res (2005) 8.38
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
The genome of the cucumber, Cucumis sativus L. Nat Genet (2009) 8.19
Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nat Genet (2013) 8.02
An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science (2012) 7.94
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics (2004) 7.79
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature (2010) 7.51
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res (2008) 7.45
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol (2002) 7.21
The evolution of gene expression levels in mammalian organs. Nature (2011) 7.16
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia. Nat Genet (2010) 7.08
Richness of human gut microbiome correlates with metabolic markers. Nature (2013) 6.93
Echinococcosis. Lancet (2003) 6.83
Population analysis of large copy number variants and hotspots of human genetic disease. Am J Hum Genet (2009) 6.79
TreeFam: 2008 Update. Nucleic Acids Res (2007) 6.63
Ascertainment bias in studies of human genome-wide polymorphism. Genome Res (2005) 6.63
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
Proportionally more deleterious genetic variation in European than in African populations. Nature (2008) 6.61
Aberrant excitatory neuronal activity and compensatory remodeling of inhibitory hippocampal circuits in mouse models of Alzheimer's disease. Neuron (2007) 6.60
Clinical features of the initial cases of 2009 pandemic influenza A (H1N1) virus infection in China. N Engl J Med (2009) 6.45
Simultaneous inference of selection and population growth from patterns of variation in the human genome. Proc Natl Acad Sci U S A (2005) 5.94
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell (2008) 5.73
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat Genet (2011) 5.73
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc Natl Acad Sci U S A (2007) 5.64
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58