Published in Environ Microbiol on October 02, 2009
Challenges for complex microbial ecosystems: combination of experimental approaches with mathematical modeling. Microbes Environ (2013) 1.50
Advancing microbial sciences by individual-based modelling. Nat Rev Microbiol (2016) 0.91
Selective enrichment of two different types of Nitrospira-like nitrite-oxidizing bacteria from a wastewater treatment plant. Microbes Environ (2013) 0.89
Variable cell morphology approach for individual-based modeling of microbial communities. Biophys J (2014) 0.79
High Oxygen Concentration Increases the Abundance and Activity of Bacterial Rather than Archaeal Nitrifiers in Rice Field Soil. Microb Ecol (2015) 0.76
Assessment of Heterotrophic Growth Supported by Soluble Microbial Products in Anammox Biofilm using Multidimensional Modeling. Sci Rep (2016) 0.75
Rediscovery of the microbial world in microbial ecology. Microbes Environ (2013) 0.75
Mathematical modeling of dormant cell formation in growing biofilm. Front Microbiol (2015) 0.75
iDynoMiCS: next-generation individual-based modelling of biofilms. Environ Microbiol (2011) 1.56
Startup of reactors for anoxic ammonium oxidation: experiences from the first full-scale anammox reactor in Rotterdam. Water Res (2007) 1.55
Modeling the PAO-GAO competition: effects of carbon source, pH and temperature. Water Res (2008) 1.51
Challenges for complex microbial ecosystems: combination of experimental approaches with mathematical modeling. Microbes Environ (2013) 1.50
Enrichment of a mixed bacterial culture with a high polyhydroxyalkanoate storage capacity. Biomacromolecules (2009) 1.49
The membrane bioreactor: a novel tool to grow anammox bacteria as free cells. Biotechnol Bioeng (2008) 1.47
Nitrous oxide emission during wastewater treatment. Water Res (2009) 1.47
Mixed culture biotechnology for bioenergy production. Curr Opin Biotechnol (2007) 1.44
A framework for multidimensional modelling of activity and structure of multispecies biofilms. Environ Microbiol (2005) 1.37
Filamentous bulking sludge--a critical review. Water Res (2004) 1.30
Biofilm-control strategies based on enzymic disruption of the extracellular polymeric substance matrix--a modelling study. Microbiology (2005) 1.29
Transitions in oral and intestinal microflora composition and innate immune receptor-dependent stimulation during mouse development. Infect Immun (2009) 1.25
A general description of detachment for multidimensional modelling of biofilms. Biotechnol Bioeng (2005) 1.14
Three-dimensional biofilm model with individual cells and continuum EPS matrix. Biotechnol Bioeng (2006) 1.12
The potential of stem cells in adult tissues representative of the three germ layers. Tissue Eng Part A (2011) 1.11
A computational model for biofilm-based microbial fuel cells. Water Res (2007) 1.10
Salinity decreases nitrite reductase gene diversity in denitrifying bacteria of wastewater treatment systems. Appl Environ Microbiol (2004) 1.09
Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J (2012) 1.08
Hollow-fiber membrane chamber as a device for in situ environmental cultivation. Appl Environ Microbiol (2009) 1.07
Multi-scale individual-based model of microbial and bioconversion dynamics in aerobic granular sludge. Environ Sci Technol (2007) 1.06
Dynamics of nitric oxide and nitrous oxide emission during full-scale reject water treatment. Water Res (2007) 1.06
New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies. J Biosci Bioeng (2010) 1.05
Real-time quantitative LAMP (loop-mediated isothermal amplification of DNA) as a simple method for monitoring ammonia-oxidizing bacteria. J Biotechnol (2006) 1.05
Low temperature decreases the phylogenetic diversity of ammonia-oxidizing archaea and bacteria in aquarium biofiltration systems. Appl Environ Microbiol (2007) 1.04
Identification of acetate- or methanol-assimilating bacteria under nitrate-reducing conditions by stable-isotope probing. Microb Ecol (2006) 1.03
CD66b regulates adhesion and activation of human eosinophils. J Immunol (2007) 1.02
Mechanisms and specific directionality of autotrophic nitrous oxide and nitric oxide generation during transient anoxia. Environ Sci Technol (2010) 1.02
Aggregate size and architecture determine microbial activity balance for one-stage partial nitritation and anammox. Appl Environ Microbiol (2009) 1.02
The effect of biofilm permeability on bio-clogging of porous media. Biotechnol Bioeng (2011) 1.00
Reduced inorganic sulfur oxidation supports autotrophic and mixotrophic growth of Magnetospirillum strain J10 and Magnetospirillum gryphiswaldense. Environ Microbiol (2010) 0.98
Polyhydroxybutyrate production from lactate using a mixed microbial culture. Biotechnol Bioeng (2011) 0.97
Sensitivity analysis of a biofilm model describing a one-stage completely autotrophic nitrogen removal (CANON) process. Biotechnol Bioeng (2002) 0.97
Cell flexibility affects the alignment of model myxobacteria. Biophys J (2010) 0.96
Anaerobic/oxic/anoxic granular sludge process as an effective nutrient removal process utilizing denitrifying polyphosphate-accumulating organisms. Water Res (2006) 0.96
Reduction-triggered red fluorescent probes for dual-color detection of oligonucleotide sequences. Org Biomol Chem (2008) 0.95
Bacterial adhesion to and viability on positively charged polymer surfaces. Microbiology (2006) 0.95
Xylose anaerobic conversion by open-mixed cultures. Appl Microbiol Biotechnol (2008) 0.94
Effect of different salt adaptation strategies on the microbial diversity, activity, and settling of nitrifying sludge in sequencing batch reactors. Appl Microbiol Biotechnol (2011) 0.94
Effect of dynamic process conditions on nitrogen oxides emission from a nitrifying culture. Environ Sci Technol (2008) 0.94
A reduction-triggered fluorescence probe for sensing nucleic acids. Bioconjug Chem (2008) 0.94
Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells. Bioconjug Chem (2009) 0.93
Heterotrophic activity compromises autotrophic nitrogen removal in membrane-aerated biofilms: results of a modeling study. Water Res (2007) 0.92
Nitrogen removal from digested black water by one-stage partial nitritation and anammox. Environ Sci Technol (2009) 0.92
Model based evaluation of the effect of pH and electrode geometry on microbial fuel cell performance. Bioelectrochemistry (2009) 0.92
Real-time monitoring of RNA helicase activity using fluorescence resonance energy transfer in vitro. Biochem Biophys Res Commun (2010) 0.92
Unravelling the reasons for disproportion in the ratio of AOB and NOB in aerobic granular sludge. Appl Microbiol Biotechnol (2012) 0.92
Isolation of Nitrospira belonging to sublineage II from a wastewater treatment plant. Microbes Environ (2013) 0.91
Computational study of the drag and oscillatory movement of biofilm streamers in fast flows. Biotechnol Bioeng (2010) 0.91
Segregation of biomass in cyclic anaerobic/aerobic granular sludge allows the enrichment of anaerobic ammonium oxidizing bacteria at low temperatures. Environ Sci Technol (2011) 0.91
Growth characteristic of anaerobic ammonium-oxidizing bacteria in an anaerobic biological filtrated reactor. Appl Microbiol Biotechnol (2005) 0.91
Glycerol fermentation by (open) mixed cultures: a chemostat study. Biotechnol Bioeng (2008) 0.91
Retracted Reproducible subcutaneous transplantation of cell sheets into recipient mice. Nat Protoc (2011) 0.90
Looking beyond struvite for P-recovery. Environ Sci Technol (2013) 0.90
Selective enrichment of two different types of Nitrospira-like nitrite-oxidizing bacteria from a wastewater treatment plant. Microbes Environ (2013) 0.89
JAK2V617F mutation status and allele burden in classical Ph-negative myeloproliferative neoplasms in Japan. Int J Hematol (2014) 0.89
Highly sensitive real-time PCR assay for quantification of toxic cyanobacteria based on microcystin synthetase A gene. J Biosci Bioeng (2006) 0.89
Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase. J Enzyme Inhib Med Chem (2013) 0.89
Aerobic sludge granulation: a tale of two polysaccharides? Water Res (2012) 0.89
Inhibition of hepatitis C virus replication and viral helicase by ethyl acetate extract of the marine feather star Alloeocomatella polycladia. Mar Drugs (2012) 0.89
Factors affecting the microbial populations at full-scale enhanced biological phosphorus removal (EBPR) wastewater treatment plants in The Netherlands. Water Res (2008) 0.89
Diversity of microbial communities in open mixed culture fermentations: impact of the pH and carbon source. Appl Microbiol Biotechnol (2008) 0.89
Microbial community of sulfate-reducing up-flow sludge bed in the SANI® process for saline sewage treatment. Appl Microbiol Biotechnol (2011) 0.89
Reduced iron induced nitric oxide and nitrous oxide emission. Water Res (2011) 0.88
Fatty acids production from hydrogen and carbon dioxide by mixed culture in the membrane biofilm reactor. Water Res (2013) 0.88
Microbial diversity of an oil-water processing site and its associated oil field: the possible role of microorganisms as information carriers from oil-associated environments. FEMS Microbiol Ecol (2009) 0.88
Effect of feeding pattern and storage on the sludge settleability under aerobic conditions. Water Res (2003) 0.88
Development of osteogenic cell sheets for bone tissue engineering applications. Tissue Eng Part A (2011) 0.88
Response of anaerobic ammonium-oxidizing bacteria to hydroxylamine. Appl Environ Microbiol (2008) 0.88
Alternately binding probe competitive PCR as a simple, cost-effective, and accurate quantification method for JAK2V617F allele burden in myeloproliferative neoplasms. Leuk Res (2011) 0.88
Expression of amoA mRNA in wastewater treatment processes examined by competitive RT-PCR. J Biotechnol (2004) 0.87
Metabolic model for glycogen-accumulating organisms in anaerobic/aerobic activated sludge systems. Biotechnol Bioeng (2003) 0.87
Nitrous oxide production by lithotrophic ammonia-oxidizing bacteria and implications for engineered nitrogen-removal systems. Biochem Soc Trans (2011) 0.87
A novel sulfate reduction, autotrophic denitrification, nitrification integrated (SANI) process for saline wastewater treatment. Water Res (2009) 0.87
Modeling product formation in anaerobic mixed culture fermentations. Biotechnol Bioeng (2006) 0.87
Kinetic modeling of phototrophic biofilms: the PHOBIA model. Biotechnol Bioeng (2007) 0.86
Metabolic modeling of denitrification in Agrobacterium tumefaciens: a tool to study inhibiting and activating compounds for the denitrification pathway. Front Microbiol (2012) 0.86
Characterization of geochemical constituents and bacterial populations associated with As mobilization in deep and shallow tube wells in Bangladesh. Water Res (2009) 0.86
Anammox growth on pretreated municipal wastewater. Environ Sci Technol (2014) 0.86
Relation between pore sizes of protein crystals and anisotropic solute diffusivities. J Am Chem Soc (2005) 0.86
Redox-stratification controlled biofilm (ReSCoBi) for completely autotrophic nitrogen removal: the effect of co- versus counter-diffusion on reactor performance. Biotechnol Bioeng (2007) 0.86
Methane emission during municipal wastewater treatment. Water Res (2012) 0.86
Microbial sulfide oxidation in the oxic-anoxic transition zone of freshwater sediment: involvement of lithoautotrophic Magnetospirillum strain J10. FEMS Microbiol Ecol (2009) 0.86
Nitrogen removal performance using anaerobic ammonium oxidation at low temperatures. FEMS Microbiol Lett (2008) 0.85
Influence of ammonium on the accumulation of polyhydroxybutyrate (PHB) in aerobic open mixed cultures. J Biotechnol (2010) 0.85
Hydroxylamine diffusion can enhance N₂O emissions in nitrifying biofilms: a modeling study. Environ Sci Technol (2015) 0.85
Identification of key factors in Accelerated Low Water Corrosion through experimental simulation of tidal conditions: influence of stimulated indigenous microbiota. Biofouling (2014) 0.85
Influence of the C/N ratio on the performance of polyhydroxybutyrate (PHB) producing sequencing batch reactors at short SRTs. Water Res (2009) 0.85