Published in Evol Bioinform Online on July 06, 2009
Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms. PLoS One (2011) 1.20
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression. Nat Commun (2015) 1.01
Neighboring Genes Show Correlated Evolution in Gene Expression. Mol Biol Evol (2015) 0.89
Measuring gene expression divergence: the distance to keep. Biol Direct (2010) 0.87
Positive selection at high temperature reduces gene transcription in the bacteriophage ϕX174. BMC Evol Biol (2010) 0.87
Comparative modular analysis of gene expression in vertebrate organs. BMC Genomics (2012) 0.78
Selection against Robertsonian fusions involving housekeeping genes in the house mouse: integrating data from gene expression arrays and chromosome evolution. Chromosome Res (2010) 0.78
Comparison of computational models for assessing conservation of gene expression across species. PLoS One (2010) 0.77
The relationship between gene isoform multiplicity, number of exons and protein divergence. PLoS One (2013) 0.75
Microarray data analysis of gene expression evolution. Gene Regul Syst Bio (2009) 0.75
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science (1999) 83.27
Gene expression profiling predicts clinical outcome of breast cancer. Nature (2002) 71.36
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A (2001) 68.44
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell (1998) 62.20
A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A (2004) 44.81
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A (1999) 35.16
GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics (2004) 30.14
Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci U S A (2002) 25.47
A gene-coexpression network for global discovery of conserved genetic modules. Science (2003) 18.75
Robust estimators for expression analysis. Bioinformatics (2002) 8.30
Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci U S A (2006) 5.69
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science (2005) 5.68
Similarities and differences in genome-wide expression data of six organisms. PLoS Biol (2003) 4.75
Evolutionary conservation of expression profiles between human and mouse orthologous genes. Mol Biol Evol (2005) 3.62
Conservation of RET regulatory function from human to zebrafish without sequence similarity. Science (2006) 3.59
Lineage-specific gene duplication and loss in human and great ape evolution. PLoS Biol (2004) 3.45
A neutral model of transcriptome evolution. PLoS Biol (2004) 3.44
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res (2005) 3.23
Common pattern of evolution of gene expression level and protein sequence in Drosophila. Mol Biol Evol (2004) 2.66
Null mutations in human and mouse orthologs frequently result in different phenotypes. Proc Natl Acad Sci U S A (2008) 2.60
Mouse models for human lung cancer. Genes Dev (2005) 2.59
Can sequence determine function? Genome Biol (2000) 2.47
Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. OMICS (2004) 2.40
Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. PLoS Genet (2005) 2.36
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet (2009) 2.22
Evolutionary significance of gene expression divergence. Gene (2004) 2.04
Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol (2004) 1.86
Mouse models of human disease. Part I: techniques and resources for genetic analysis in mice. Genes Dev (1997) 1.81
Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate. Proc Natl Acad Sci U S A (2000) 1.77
Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication. Nucleic Acids Res (2006) 1.62
Retroposition and evolution of the DNA-binding motifs of YY1, YY2 and REX1. Nucleic Acids Res (2007) 1.55
Using DNA microarrays to study gene expression in closely related species. Bioinformatics (2007) 1.50
Gene expression evolves faster in narrowly than in broadly expressed mammalian genes. Mol Biol Evol (2005) 1.44
On the relation between promoter divergence and gene expression evolution. Mol Syst Biol (2008) 1.43
Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results. BMC Genomics (2006) 1.40
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends Genet (2004) 1.38
Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis. Development (2005) 1.37
Functional diversification of duplicate genes through subcellular adaptation of encoded proteins. Genome Biol (2008) 1.37
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol (2007) 1.36
Evolution of gene sequence and gene expression are not correlated in yeast. Trends Genet (2008) 1.28
Cross-species comparison of genome-wide expression patterns. Genome Biol (2004) 1.08
Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons. Genome Biol (2007) 1.08
Mouse models to study the interaction of risk factors for human liver cancer. Cancer Res (2003) 1.05
A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation. BMC Genomics (2006) 1.02
Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes. Genome Biol (2009) 1.00
Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms. Bioinformatics (2006) 0.88
Comparative transcriptional profiling of two human embryonic stem cell lines. Biotechnol Bioeng (2004) 1.71
LSOSS: Detection of Cancer Outlier Differential Gene Expression. Biomark Insights (2010) 0.94
Transcriptional profiling of initial differentiation events in human embryonic stem cells. Biochem Biophys Res Commun (2004) 0.93
A method for predicting disease subtypes in presence of misclassification among training samples using gene expression: application to human breast cancer. Bioinformatics (2005) 0.90
Sample size determination for classifiers based on single-nucleotide polymorphisms. Biostatistics (2012) 0.86
National evaluation for calving ease, gestation length and birth weight by linear and threshold model methodologies. J Appl Genet (2002) 0.86
AntEpiSeeker: detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm. BMC Res Notes (2010) 0.85
Effect of diet supplementation on the expression of bovine genes associated with Fatty Acid synthesis and metabolism. Bioinform Biol Insights (2010) 0.84
Effects of misdiagnosis in input data on the identification of differential expression genes in incipient Alzheimer patients. In Silico Biol (2008) 0.82
SNPxGE(2): a database for human SNP-coexpression associations. Bioinformatics (2011) 0.81
Omega-6 fat supplementation alters lipogenic gene expression in bovine subcutaneous adipose tissue. Gene Regul Syst Bio (2010) 0.80
Grassland invader responses to realistic changes in native species richness. Ecol Appl (2007) 0.80
Gene expression in hypothalamus, liver, and adipose tissues and food intake response to melanocortin-4 receptor agonist in pigs expressing melanocortin-4 receptor mutations. Physiol Genomics (2010) 0.79
A simulation study for the analysis of uncertain binary responses: application to first insemination success in beef cattle. Genet Sel Evol (2005) 0.79
Comparison of two output-coding strategies for multi-class tumor classification using gene expression data and Latent Variable Model as binary classifier. Cancer Inform (2010) 0.78
Comparison of computational models for assessing conservation of gene expression across species. PLoS One (2010) 0.77
A jackknife-like method for classification and uncertainty assessment of multi-category tumor samples using gene expression information. BMC Genomics (2010) 0.77
Dissection of Koch's residual feed intake: implications for selection. Poult Sci (2013) 0.76
Model for fitting longitudinal traits subject to threshold response applied to genetic evaluation for heat tolerance. Genet Sel Evol (2009) 0.75
A statistical and biological approach for identifying misdiagnosis of incipient Alzheimer patients using gene expression data. Conf Proc IEEE Eng Med Biol Soc (2006) 0.75