Published in Nat Prod Rep on August 25, 2009
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc (2010) 1.51
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J (2011) 1.17
Investigation of terpene diversification across multiple sequenced plant genomes. Proc Natl Acad Sci U S A (2014) 1.16
High-resolution metabolic mapping of cell types in plant roots. Proc Natl Acad Sci U S A (2013) 1.13
Triterpene functional genomics in licorice for identification of CYP72A154 involved in the biosynthesis of glycyrrhizin. Plant Cell (2011) 1.11
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology. Comput Struct Biotechnol J (2013) 0.98
Recent advances of metabolomics in plant biotechnology. Plant Biotechnol Rep (2011) 0.93
UGT74D1 catalyzes the glucosylation of 2-oxindole-3-acetic acid in the auxin metabolic pathway in Arabidopsis. Plant Cell Physiol (2013) 0.91
Constructing de novo biosynthetic pathways for chemical synthesis inside living cells. Biochemistry (2011) 0.91
Recent advances towards development and commercialization of plant cell culture processes for the synthesis of biomolecules. Plant Biotechnol J (2011) 0.89
Quinolizidine alkaloid biosynthesis: recent advances and future prospects. Front Plant Sci (2012) 0.87
Flavonoid biosynthesis genes putatively identified in the aromatic plant Polygonum minus via Expressed Sequences Tag (EST) analysis. Int J Mol Sci (2012) 0.86
Metabolic and miRNA profiling of TMV infected plants reveals biphasic temporal changes. PLoS One (2011) 0.85
Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. Plant Cell Physiol (2013) 0.84
The use of natural genetic diversity in the understanding of metabolic organization and regulation. Front Plant Sci (2011) 0.84
Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiol (2015) 0.81
Discovery of a novel amino acid racemase through exploration of natural variation in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2015) 0.79
Exploiting natural variation of secondary metabolism identifies a gene controlling the glycosylation diversity of dihydroxybenzoic acids in Arabidopsis thaliana. Genetics (2014) 0.79
Functional analysis of three BrMYB28 transcription factors controlling the biosynthesis of glucosinolates in Brassica rapa. Plant Mol Biol (2016) 0.77
Recent Advances in the Application of Metabolomics to Studies of Biogenic Volatile Organic Compounds (BVOC) Produced by Plant. Metabolites (2014) 0.77
Functional characterization of sesquiterpene synthase from Polygonum minus. ScientificWorldJournal (2014) 0.76
Biosynthesis of cabbage phytoalexins from indole glucosinolate. Proc Natl Acad Sci U S A (2017) 0.75
MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom (2010) 6.16
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell (2002) 5.64
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci U S A (2007) 4.13
Potential of metabolomics as a functional genomics tool. Trends Plant Sci (2004) 4.10
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res (2006) 3.74
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J (2008) 3.73
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J (2005) 3.73
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 3.41
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem (2005) 2.98
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell (2008) 2.45
PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol (2008) 2.22
Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes. Annu Rev Plant Biol (2011) 2.18
Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J (2008) 2.01
A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling. Biochem J (2003) 2.00
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis. Plant J (2005) 1.97
Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J (2008) 1.91
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 1.90
Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell (2006) 1.86
KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research. Plant Cell Physiol (2011) 1.82
Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis. Plant Cell (2008) 1.81
UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana. J Biol Chem (2003) 1.78
Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots. Plant J (2002) 1.72
Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol (2009) 1.70
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell (2009) 1.66
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells. Nucleic Acids Res (2002) 1.64
Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal Chem (2010) 1.62
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol (2009) 1.60
Structural insights into eRF3 and stop codon recognition by eRF1. Genes Dev (2009) 1.57
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J (2009) 1.55
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol (2008) 1.52
Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J Biol Chem (2007) 1.52
Recent advances in the biosynthesis and accumulation of anthocyanins. Nat Prod Rep (2003) 1.49
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. Plant J (2013) 1.49
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci U S A (2009) 1.48
Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis. Plant Physiol (2003) 1.48
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J (2007) 1.39
Licorice beta-amyrin 11-oxidase, a cytochrome P450 with a key role in the biosynthesis of the triterpene sweetener glycyrrhizin. Proc Natl Acad Sci U S A (2008) 1.37
Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex. Proc Natl Acad Sci U S A (2010) 1.35
Physiological roles of the beta-substituted alanine synthase gene family in Arabidopsis. Plant Physiol (2007) 1.35
Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest. Plant Cell (2011) 1.35
Camptothecin biosynthetic genes in hairy roots of Ophiorrhiza pumila: cloning, characterization and differential expression in tissues and by stress compounds. Plant Cell Physiol (2003) 1.34
Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites. Plant Cell (2009) 1.32
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinformatics (2010) 1.30
A gamma-glutamyl transpeptidase-independent pathway of glutathione catabolism to glutamate via 5-oxoproline in Arabidopsis. Plant Physiol (2008) 1.27
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell (2009) 1.27
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst Biol (2007) 1.25
Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data. Anal Chem (2009) 1.25
Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 1.23
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice. Plant J (2011) 1.19
Integrated omics approaches in plant systems biology. Curr Opin Chem Biol (2009) 1.17
Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J (2011) 1.17
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst Biol (2011) 1.17
Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. Plant J (2011) 1.16
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database. Phytochemistry (2012) 1.15
Genetic engineering of group 2 sigma factor SigE widely activates expressions of sugar catabolic genes in Synechocystis species PCC 6803. J Biol Chem (2011) 1.15
Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. Plant J (2011) 1.15
Triterpenoid biosynthesis and engineering in plants. Front Plant Sci (2011) 1.14
CYP716A subfamily members are multifunctional oxidases in triterpenoid biosynthesis. Plant Cell Physiol (2011) 1.14
LC/PDA/ESI-MS Profiling and Radical Scavenging Activity of Anthocyanins in Various Berries. J Biomed Biotechnol (2004) 1.12
Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis. Plant Physiol (2004) 1.11
Triterpene functional genomics in licorice for identification of CYP72A154 involved in the biosynthesis of glycyrrhizin. Plant Cell (2011) 1.11
Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis. Plant Cell Physiol (2011) 1.10
Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J (2012) 1.09
Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants. Proc Natl Acad Sci U S A (2008) 1.07
Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. Plant Cell Physiol (2009) 1.07
Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum. Plant J (2011) 1.07
Integrating genomics and metabolomics for engineering plant metabolic pathways. Curr Opin Biotechnol (2005) 1.06
Posttranscriptional regulation of high-affinity sulfate transporters in Arabidopsis by sulfur nutrition. Plant Physiol (2007) 1.06
A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol Biol (2002) 1.05
Lanosterol synthase in dicotyledonous plants. Plant Cell Physiol (2006) 1.05
Two flavonoid glucosyltransferases from Petunia hybrida: molecular cloning, biochemical properties and developmentally regulated expression. Plant Mol Biol (2002) 1.05
Increased bioplastic production with an RNA polymerase sigma factor SigE during nitrogen starvation in Synechocystis sp. PCC 6803. DNA Res (2013) 1.03
Mechanistic studies on three 2-oxoglutarate-dependent oxygenases of flavonoid biosynthesis: anthocyanidin synthase, flavonol synthase, and flavanone 3beta-hydroxylase. J Biol Chem (2003) 1.03
Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.02
Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana. Phytochemistry (2009) 1.02
PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. Plant Cell Physiol (2013) 1.02
Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Phytochemistry (2007) 1.02
Capillary electrophoresis-mass spectrometry reveals the distribution of carbon metabolites during nitrogen starvation in Synechocystis sp. PCC 6803. Environ Microbiol (2013) 1.01
Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis. Plant Physiol (2013) 1.00
RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function. Plant Cell Physiol (2010) 0.99
Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism. Mol Plant (2009) 0.99
Application of gene targeting to designed mutation breeding of high-tryptophan rice. Plant Physiol (2011) 0.98
Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation. Proc Natl Acad Sci U S A (2010) 0.98
A new class of plant lipid is essential for protection against phosphorus depletion. Nat Commun (2013) 0.97
Camptothecin: therapeutic potential and biotechnology. Curr Pharm Biotechnol (2007) 0.97
Pathway-level acceleration of glycogen catabolism by a response regulator in the cyanobacterium Synechocystis species PCC 6803. Plant Physiol (2014) 0.97
Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis. Plant Cell Physiol (2009) 0.97
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol Biol Evol (2010) 0.97
Integrated analysis of the effects of cold and dehydration on rice metabolites, phytohormones, and gene transcripts. Plant Physiol (2014) 0.97
Plant lipidomics based on hydrophilic interaction chromatography coupled to ion trap time-of-flight mass spectrometry. Metabolomics (2011) 0.97
Transcriptional and metabolic programs following exposure of plants to UV-B irradiation. Plant Signal Behav (2011) 0.97
Insertional inactivation of the methionine s-methyltransferase gene eliminates the s-methylmethionine cycle and increases the methylation ratio. Plant Physiol (2003) 0.96
Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis. Plant Physiol (2011) 0.96
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Res (2010) 0.96
A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis. Plant Cell Environ (2010) 0.95
Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects. Nat Prod Rep (2015) 0.95