Published in J Biol Chem on February 21, 2007
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell (2008) 2.45
Metabolite annotations based on the integration of mass spectral information. Plant J (2008) 1.97
Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. J Plant Res (2010) 1.82
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J (2009) 1.55
Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PLoS Biol (2011) 1.54
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc (2010) 1.51
Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance. Plant Cell (2010) 1.47
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell (2009) 1.27
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst Biol (2007) 1.25
Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J (2011) 1.17
PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proc Natl Acad Sci U S A (2013) 1.16
Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula. Plant Cell (2010) 1.15
Triterpenoid biosynthesis and engineering in plants. Front Plant Sci (2011) 1.14
Functional differentiation of the glycosyltransferases that contribute to the chemical diversity of bioactive flavonol glycosides in grapevines (Vitis vinifera). Plant Cell (2010) 1.12
Metabolomic and genetic analyses of flavonol synthesis in Arabidopsis thaliana support the in vivo involvement of leucoanthocyanidin dioxygenase. Planta (2008) 1.09
Catalytic key amino acids and UDP-sugar donor specificity of a plant glucuronosyltransferase, UGT94B1: molecular modeling substantiated by site-specific mutagenesis and biochemical analyses. Plant Physiol (2008) 1.04
Feedback inhibition of the general phenylpropanoid and flavonol biosynthetic pathways upon a compromised flavonol-3-O-glycosylation. J Exp Bot (2012) 1.02
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology. Comput Struct Biotechnol J (2013) 0.98
Local differentiation of sugar donor specificity of flavonoid glycosyltransferase in Lamiales. Plant Cell (2009) 0.97
Kaempferol 3-O-rhamnoside-7-O-rhamnoside is an endogenous flavonol inhibitor of polar auxin transport in Arabidopsis shoots. New Phytol (2013) 0.96
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Res (2010) 0.96
Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches. Plant Physiol (2012) 0.94
Recent advances of metabolomics in plant biotechnology. Plant Biotechnol Rep (2011) 0.93
From models to crop species: caveats and solutions for translational metabolomics. Front Plant Sci (2011) 0.91
Nutritionally improved agricultural crops. Plant Physiol (2008) 0.90
Characterization of a glucosyltransferase enzyme involved in the formation of kaempferol and quercetin sophorosides in Crocus sativus. Plant Physiol (2012) 0.88
Recombinant expression and functional characterisation of regiospecific flavonoid glucosyltransferases from Hieracium pilosella L. Planta (2009) 0.86
Induced transcriptional profiling of phenylpropanoid pathway genes increased flavonoid and lignin content in Arabidopsis leaves in response to microbial products. BMC Plant Biol (2014) 0.85
Co-expression analysis identifies putative targets for CBP60g and SARD1 regulation. BMC Plant Biol (2012) 0.85
Co-expression and co-responses: within and beyond transcription. Front Plant Sci (2012) 0.84
Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. Plant Cell Physiol (2013) 0.84
A flavonoid 3-O-glucoside:2"-O-glucosyltransferase responsible for terminal modification of pollen-specific flavonols in Arabidopsis thaliana. Plant J (2014) 0.84
Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. J Exp Bot (2015) 0.84
Metabolic profiles and cDNA-AFLP analysis of Salvia miltiorrhiza and Salvia castanea Diel f. tomentosa Stib. PLoS One (2012) 0.84
Biosynthesis of proanthocyanidins in white clover flowers: cross talk within the flavonoid pathway. Plant Physiol (2011) 0.82
Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiol (2015) 0.81
Identification and Characterization of the Iridoid Synthase Involved in Oleuropein Biosynthesis in Olive (Olea europaea) Fruits. J Biol Chem (2015) 0.81
7-Rhamnosylated Flavonols Modulate Homeostasis of the Plant Hormone Auxin and Affect Plant Development. J Biol Chem (2016) 0.79
Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. Sci Rep (2016) 0.79
FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiol (2016) 0.79
Synthesis of flavonoid O-pentosides by Escherichia coli through engineering of nucleotide sugar pathways and glycosyltransferase. Appl Environ Microbiol (2014) 0.79
Identification of candidate flavonoid pathway genes using transcriptome correlation network analysis in ripe strawberry (Fragaria × ananassa) fruits. J Exp Bot (2015) 0.78
Light induced changes in protein expression and uniform regulation of transcription in the thylakoid lumen of Arabidopsis thaliana. PLoS One (2009) 0.77
Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae. Nat Commun (2016) 0.77
Engineering flavonoid glycosyltransferases for enhanced catalytic efficiency and extended sugar-donor selectivity. Planta (2013) 0.77
Production of kaempferol 3-O-rhamnoside from glucose using engineered Escherichia coli. J Ind Microbiol Biotechnol (2014) 0.76
Identification of molecular processes needed for vascular formation through transcriptome analysis of different vascular systems. BMC Genomics (2013) 0.75
Pan- and core- network analysis of co-expression genes in a model plant. Sci Rep (2016) 0.75
Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana. PLoS Genet (2016) 0.75
Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions. Front Plant Sci (2014) 0.75
UDP-glucose:3-deoxyanthocyanidin 5-O-glucosyltransferase from Sinningia cardinalis. Planta (2010) 0.75
Transcriptome-Wide Identification of Novel UV-B- and Light Modulated Flavonol Pathway Genes Controlled by VviMYBF1. Front Plant Sci (2017) 0.75
MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom (2010) 6.16
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell (2002) 5.64
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci U S A (2007) 4.13
Potential of metabolomics as a functional genomics tool. Trends Plant Sci (2004) 4.10
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res (2006) 3.74
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J (2008) 3.73
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J (2005) 3.73
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 3.41
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem (2005) 2.98
Metabolic priming by a secreted fungal effector. Nature (2011) 2.56
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell (2008) 2.45
PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol (2008) 2.22
Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes. Annu Rev Plant Biol (2011) 2.18
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell (2011) 2.13
Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J (2008) 2.01
A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling. Biochem J (2003) 2.00
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis. Plant J (2005) 1.97
Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J (2008) 1.91
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 1.90
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. Plant Cell (2011) 1.88
Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell (2006) 1.86
KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research. Plant Cell Physiol (2011) 1.82
Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis. Plant Cell (2008) 1.81
UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana. J Biol Chem (2003) 1.78
The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity. Plant Physiol Biochem (2013) 1.76
JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell (2012) 1.75
Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots. Plant J (2002) 1.72
Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol (2009) 1.70
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environ (2013) 1.69
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell (2009) 1.66
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells. Nucleic Acids Res (2002) 1.64
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci U S A (2013) 1.63
Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria. Plant Cell (2010) 1.63
Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal Chem (2010) 1.62
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol (2009) 1.60
Structural insights into eRF3 and stop codon recognition by eRF1. Genes Dev (2009) 1.57
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J (2009) 1.55
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol (2008) 1.52
Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol (2011) 1.51
Recent advances in the biosynthesis and accumulation of anthocyanins. Nat Prod Rep (2003) 1.49
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. Plant J (2013) 1.49
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci U S A (2009) 1.48
Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis. Plant Physiol (2003) 1.48
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J (2007) 1.39
Licorice beta-amyrin 11-oxidase, a cytochrome P450 with a key role in the biosynthesis of the triterpene sweetener glycyrrhizin. Proc Natl Acad Sci U S A (2008) 1.37
Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell (2013) 1.36
Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex. Proc Natl Acad Sci U S A (2010) 1.35
Physiological roles of the beta-substituted alanine synthase gene family in Arabidopsis. Plant Physiol (2007) 1.35
Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest. Plant Cell (2011) 1.35
Camptothecin biosynthetic genes in hairy roots of Ophiorrhiza pumila: cloning, characterization and differential expression in tissues and by stress compounds. Plant Cell Physiol (2003) 1.34
Protein degradation - an alternative respiratory substrate for stressed plants. Trends Plant Sci (2011) 1.33
Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnol J (2009) 1.33
Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites. Plant Cell (2009) 1.32
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinformatics (2010) 1.30
A gamma-glutamyl transpeptidase-independent pathway of glutathione catabolism to glutamate via 5-oxoproline in Arabidopsis. Plant Physiol (2008) 1.27
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell (2009) 1.27
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst Biol (2007) 1.25
Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data. Anal Chem (2009) 1.25
AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Curr Biol (2012) 1.23
Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 1.23
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice. Plant J (2011) 1.19
Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis. Cell Mol Life Sci (2012) 1.17
Integrated omics approaches in plant systems biology. Curr Opin Chem Biol (2009) 1.17
Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J (2011) 1.17
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst Biol (2011) 1.17
Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. Plant J (2011) 1.16
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database. Phytochemistry (2012) 1.15
Genetic engineering of group 2 sigma factor SigE widely activates expressions of sugar catabolic genes in Synechocystis species PCC 6803. J Biol Chem (2011) 1.15
Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. Plant J (2011) 1.15
Triterpenoid biosynthesis and engineering in plants. Front Plant Sci (2011) 1.14
CYP716A subfamily members are multifunctional oxidases in triterpenoid biosynthesis. Plant Cell Physiol (2011) 1.14
Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation. New Phytol (2010) 1.13
Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture. Plant Cell (2011) 1.12
Fusicoccins are biosynthesized by an unusual chimera diterpene synthase in fungi. Proc Natl Acad Sci U S A (2007) 1.12
Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. Plant Physiol (2013) 1.12
LC/PDA/ESI-MS Profiling and Radical Scavenging Activity of Anthocyanins in Various Berries. J Biomed Biotechnol (2004) 1.12
Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis. Plant Physiol (2004) 1.11
Triterpene functional genomics in licorice for identification of CYP72A154 involved in the biosynthesis of glycyrrhizin. Plant Cell (2011) 1.11
Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis. Plant Cell Physiol (2011) 1.10
Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J (2012) 1.09
Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. Plant Cell Physiol (2009) 1.07
Functional genomics for plant natural product biosynthesis. Nat Prod Rep (2009) 1.07