Published in Nucleic Acids Res on November 17, 2009
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proc Natl Acad Sci U S A (2013) 1.48
Product feedback regulation implicated in translational control of the Trypanosoma brucei S-adenosylmethionine decarboxylase regulatory subunit prozyme. Mol Microbiol (2013) 1.45
Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors. Proc Natl Acad Sci U S A (2012) 1.12
AMD1 is essential for ESC self-renewal and is translationally down-regulated on differentiation to neural precursor cells. Genes Dev (2012) 1.04
uORFdb--a comprehensive literature database on eukaryotic uORF biology. Nucleic Acids Res (2013) 0.99
Translational Regulation of Cytoplasmic mRNAs. Arabidopsis Book (2013) 0.93
Conserved Peptide Upstream Open Reading Frames are Associated with Regulatory Genes in Angiosperms. Front Plant Sci (2012) 0.91
Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases. Biochemistry (2011) 0.91
Functions of Polyamines in Mammals. J Biol Chem (2016) 0.90
Allosteric activation of trypanosomatid deoxyhypusine synthase by a catalytically dead paralog. J Biol Chem (2013) 0.88
Polyamine-regulated translation of spermidine/spermine-N1-acetyltransferase. Mol Cell Biol (2012) 0.87
Known and novel post-transcriptional regulatory sequences are conserved across plant families. RNA (2012) 0.87
Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs. Comp Funct Genomics (2012) 0.86
Basic anatomy and tumor biology of the RPS6KA6 gene that encodes the p90 ribosomal S6 kinase-4. Oncogene (2012) 0.84
Complex alternative splicing of the smarca2 gene suggests the importance of smarca2-B variants. J Cancer (2011) 0.84
Cyclin-dependent kinase 4 may be expressed as multiple proteins and have functions that are independent of binding to CCND and RB and occur at the S and G 2/M phases of the cell cycle. Cell Cycle (2013) 0.83
Translational control of cyclins. Cell Div (2011) 0.81
A role for polyamine regulators in ESC self-renewal. Cell Cycle (2012) 0.78
The Predominant Proteins that React to the MC-20 Estrogen Receptor Alpha Antibody Differ in Molecular Weight between the Mammary Gland and Uterus in the Mouse and Rat. Int J Biomed Sci (2012) 0.78
Independent evolutionary origins of functional polyamine biosynthetic enzyme fusions catalysing de novo diamine to triamine formation. Mol Microbiol (2011) 0.75
Molecular biology: Antibiotic re-frames decoding. Nature (2013) 0.75
Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics. BMC Genomics (2017) 0.75
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science (2009) 20.75
Polyamines. Annu Rev Biochem (1984) 12.92
Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol Cell Biol (1989) 5.16
Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme. Cell (1995) 3.64
Hypusine-containing protein eIF5A promotes translation elongation. Nature (2009) 2.99
Estimation of polyamine binding to macromolecules and ATP in bovine lymphocytes and rat liver. J Biol Chem (1991) 2.36
Regulation of ornithine decarboxylase. J Biol Chem (2006) 2.27
Physical evidence for distinct mechanisms of translational control by upstream open reading frames. EMBO J (2001) 2.02
Enhanced differential synthesis of proteins in a mammalian cell-free system by addition of polyamines. J Biol Chem (1975) 1.93
Ornithine decarboxylase antizyme: a novel type of regulatory protein. Trends Biochem Sci (1996) 1.86
Feedback repression of polyamine transport is mediated by antizyme in mammalian tissue-culture cells. Biochem J (1994) 1.69
Spermidine/spermine-N(1)-acetyltransferase: a key metabolic regulator. Am J Physiol Endocrinol Metab (2008) 1.64
Regulation of rat ornithine decarboxylase mRNA translation by its 5'-untranslated region. J Biol Chem (1990) 1.61
Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation. Nucleic Acids Res (2007) 1.55
A nascent polypeptide domain that can regulate translation elongation. Proc Natl Acad Sci U S A (2004) 1.43
Crystal structure of human spermine synthase: implications of substrate binding and catalytic mechanism. J Biol Chem (2008) 1.39
Polyamine regulation of ribosome pausing at the upstream open reading frame of S-adenosylmethionine decarboxylase. J Biol Chem (2001) 1.38
uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs. Proc Natl Acad Sci U S A (2008) 1.33
Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center. J Bacteriol (2007) 1.22
Regulation of ornithine decarboxylase in a transformed cell line that overexpresses translation initiation factor eIF-4E. Cancer Res (1996) 1.19
A dual upstream open reading frame-based autoregulatory circuit controlling polyamine-responsive translation. J Biol Chem (2005) 1.18
Regulated translation termination at the upstream open reading frame in s-adenosylmethionine decarboxylase mRNA. J Biol Chem (2001) 1.18
The effect of difluoromethylornithine on decreasing prostate size and polyamines in men: results of a year-long phase IIb randomized placebo-controlled chemoprevention trial. Cancer Epidemiol Biomarkers Prev (2008) 1.15
Abrogation of upstream open reading frame-mediated translational control of a plant S-adenosylmethionine decarboxylase results in polyamine disruption and growth perturbations. J Biol Chem (2002) 1.09
Characterization of the termination-reinitiation strategy employed in the expression of influenza B virus BM2 protein. RNA (2008) 1.08
Spermine synthase deficiency leads to deafness and a profound sensitivity to alpha-difluoromethylornithine. J Biol Chem (2008) 1.04
Kinetics of paused ribosome recycling in Escherichia coli. J Mol Biol (2009) 1.01
The translation in vitro of rat ornithine decarboxylase mRNA is blocked by its 5' untranslated region in a polyamine-independent way. Biochem J (1991) 0.97
Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. J Bacteriol (2007) 0.93
Polyamine transport by mammalian cells and mitochondria: role of antizyme and glycosaminoglycans. J Biol Chem (2005) 0.88
Polyamine regulation of ornithine decarboxylase synthesis in Neurospora crassa. Mol Cell Biol (2000) 0.85
Expression proteomics identifies biochemical adaptations and defense responses in transgenic plants with perturbed polyamine metabolism. FEBS Lett (2004) 0.79
Recoding: translational bifurcations in gene expression. Gene (2002) 2.72
An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci U S A (2008) 2.54
Deletion of selenoprotein P alters distribution of selenium in the mouse. J Biol Chem (2003) 2.27
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences. Nucleic Acids Res (2011) 2.16
A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting. Virol J (2009) 1.69
Comparison of approaches for rational siRNA design leading to a new efficient and transparent method. Nucleic Acids Res (2007) 1.68
Discovery of a small arterivirus gene that overlaps the GP5 coding sequence and is important for virus production. J Gen Virol (2011) 1.61
Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation. Nucleic Acids Res (2007) 1.55
Screening the SPO11 and EIF5A2 genes in a population of infertile men. Fertil Steril (2005) 1.51
Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. EMBO J (2003) 1.51
Observation of dually decoded regions of the human genome using ribosome profiling data. Genome Res (2012) 1.50
NS1' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness. J Virol (2009) 1.50
Readthrough of dystrophin stop codon mutations induced by aminoglycosides. Ann Neurol (2004) 1.47
RECODE 2003. Nucleic Acids Res (2003) 1.46
P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA (2004) 1.46
Recoding elements located adjacent to a subset of eukaryal selenocysteine-specifying UGA codons. EMBO J (2005) 1.45
Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element. Nucleic Acids Res (2011) 1.44
Recoding in bacteriophages and bacterial IS elements. Trends Genet (2006) 1.43
Pyrrolysine and selenocysteine use dissimilar decoding strategies. J Biol Chem (2005) 1.43
Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma. Virol J (2008) 1.33
Programmed ribosomal frameshifting in decoding the SARS-CoV genome. Virology (2005) 1.33
Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression. Genome Biol (2005) 1.33
uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs. Proc Natl Acad Sci U S A (2008) 1.33
Release factor 2 frameshifting sites in different bacteria. EMBO Rep (2002) 1.29
Computational identification of putative programmed translational frameshift sites. Bioinformatics (2002) 1.25
Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1). Proc Natl Acad Sci U S A (2010) 1.24
The selenium-rich C-terminal domain of mouse selenoprotein P is necessary for the supply of selenium to brain and testis but not for the maintenance of whole body selenium. J Biol Chem (2007) 1.22
Efficient -2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein. Proc Natl Acad Sci U S A (2012) 1.22
Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides. RNA (2004) 1.21
Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res (2002) 1.18
Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5. Nucleic Acids Res (2011) 1.18
Programmed translational -1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs. EMBO J (2003) 1.16
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res (2009) 1.15
A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene. J Biol Chem (2006) 1.11
Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA (2003) 1.10
Maintenance of the correct open reading frame by the ribosome. EMBO Rep (2003) 1.09
A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. Mol Biol Evol (2011) 1.08
Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses. Virology (2010) 1.08
Influence of the stacking potential of the base 3' of tandem shift codons on -1 ribosomal frameshifting used for gene expression. RNA (2002) 1.08
Production of selenoprotein P (Sepp1) by hepatocytes is central to selenium homeostasis. J Biol Chem (2012) 1.06
Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species. J Mol Biol (2004) 1.04
rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinformatics (2013) 1.04
Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site. Proc Natl Acad Sci U S A (2012) 1.03
Identification of polymorphisms in the Hrb, GOPC, and Csnk2a2 genes in two men with globozoospermia. J Androl (2006) 1.01
Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli. J Bacteriol (2005) 1.00
Epitopes derived by incidental translational frameshifting give rise to a protective CTL response. J Immunol (2006) 0.99
Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome. Proc Natl Acad Sci U S A (2011) 0.98
Frameshifting in alphaviruses: a diversity of 3' stimulatory structures. J Mol Biol (2010) 0.96
Artificial neural network prediction of antisense oligodeoxynucleotide activity. Nucleic Acids Res (2002) 0.95
Factors that influence selection of coding resumption sites in translational bypassing: minimal conventional peptidyl-tRNA:mRNA pairing can suffice. J Biol Chem (2004) 0.95
Polyamine sensing during antizyme mRNA programmed frameshifting. Biochem Biophys Res Commun (2005) 0.93
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics (2006) 0.92
Molecular biology. Translation goes global. Science (2011) 0.91
Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA. EMBO J (2008) 0.90
Translation: duality in the genetic code. Nature (2007) 0.90
Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses. Virol J (2009) 0.89
Identification of novel polymorphisms in the nuclear protein genes and their relationship with human sperm protamine deficiency and severe male infertility. Fertil Steril (2006) 0.87
Identification of the nature of reading frame transitions observed in prokaryotic genomes. Nucleic Acids Res (2013) 0.86
Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses. Virol J (2009) 0.86
Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons. Biol Direct (2006) 0.85
Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene. Arch Virol (2008) 0.84
Recurrent emergence of catalytically inactive ornithine decarboxylase homologous forms that likely have regulatory function. J Mol Evol (2010) 0.84
Bioinformatic analysis suggests that the Cypovirus 1 major core protein cistron harbours an overlapping gene. Virol J (2008) 0.84
Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL. Nucleic Acids Res (2010) 0.83
Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics (2008) 0.83
The distinction between recoding and codon reassignment. Genetics (2010) 0.82
Novel antizyme gene in Danio rerio expressed in brain and retina. Gene (2006) 0.82
Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC). RNA Biol (2011) 0.81
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinformatics (2004) 0.81
Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanning. Virol J (2010) 0.81
Identification of polymorphisms and balancing selection in the male infertility candidate gene, ornithine decarboxylase antizyme 3. BMC Med Genet (2006) 0.80
Sequencing and haplotype analysis of the activator of CREM in the testis (ACT) gene in populations of fertile and infertile males. Mol Hum Reprod (2006) 0.80
P-site pairing subtleties revealed by the effects of different tRNAs on programmed translational bypassing where anticodon re-pairing to mRNA is separated from dissociation. J Mol Biol (2005) 0.80
The interplay of mRNA stimulatory signals required for AUU-mediated initiation and programmed -1 ribosomal frameshifting in decoding of transposable element IS911. J Bacteriol (2011) 0.80
Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR. Proc Natl Acad Sci U S A (2014) 0.80
Versatile dual reporter gene systems for investigating stop codon readthrough in plants. PLoS One (2009) 0.80
-1 frameshifting at a CGA AAG hexanucleotide site is required for transposition of insertion sequence IS1222. J Bacteriol (2004) 0.79
The potential role of ribosomal frameshifting in generating aberrant proteins implicated in neurodegenerative diseases. RNA (2006) 0.78
A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product. Virol J (2009) 0.77
Evidence for a novel coding sequence overlapping the 5'-terminal approximately 90 codons of the gill-associated and yellow head okavirus envelope glycoprotein gene. Virol J (2009) 0.76
Foot and Mouth's Achilles' heel? Nat Biotechnol (2008) 0.75
Polyamine analogs with xylene rings induce antizyme frameshifting, reduce ODC activity, and deplete cellular polyamines. J Biochem (2006) 0.75
A cryptic lysis gene near the start of the Qbeta replicase gene in the +1 frame. Genes Cells (2004) 0.75
Nailing fingerprints in the stars. Nature (2013) 0.75