Published in J Biol Chem on January 05, 2006
Frameshifting RNA pseudoknots: structure and mechanism. Virus Res (2008) 2.02
Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation. Nucleic Acids Res (2007) 1.55
Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae. Nucleic Acids Res (2006) 1.40
Mechanisms and implications of programmed translational frameshifting. Wiley Interdiscip Rev RNA (2012) 1.34
Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting. Proc Natl Acad Sci U S A (2009) 1.25
Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway. Nature (2014) 1.20
Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding. Proc Natl Acad Sci U S A (2012) 0.95
Targeting frameshifting in the human immunodeficiency virus. Expert Opin Ther Targets (2012) 0.93
An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting. Nucleic Acids Res (2009) 0.89
Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning. Nat Rev Genet (2015) 0.88
Stimulation of ribosomal frameshifting by antisense LNA. Nucleic Acids Res (2010) 0.88
Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting. Eukaryot Cell (2006) 0.87
The gene of an archaeal alpha-L-fucosidase is expressed by translational frameshifting. Nucleic Acids Res (2006) 0.82
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res (2016) 0.82
Stimulation of -1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot. RNA (2010) 0.82
Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC). RNA Biol (2011) 0.81
Genetic and molecular analyses of PEG10 reveal new aspects of genomic organization, transcription and translation. PLoS One (2010) 0.80
A general strategy to inhibiting viral -1 frameshifting based on upstream attenuation duplex formation. Nucleic Acids Res (2015) 0.78
The potential role of ribosomal frameshifting in generating aberrant proteins implicated in neurodegenerative diseases. RNA (2006) 0.78
HIV-1 and Human PEG10 Frameshift Elements Are Functionally Distinct and Distinguished by Novel Small Molecule Modulators. PLoS One (2015) 0.75
Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene. Mol Cell (2017) 0.75
Possible utilization of -1 Ribosomal frame shifting in the expression of a human SEMA6C isoform. Bioinformation (2013) 0.75
Revealing -1 programmed ribosomal frameshifting mechanisms by single-molecule techniques and computational methods. Comput Math Methods Med (2012) 0.75
Rab-GDI complex dissociation factor expressed through translational frameshifting in filamentous ascomycetes. PLoS One (2013) 0.75
Distinct functional domains of PNMA5 mediate protein-protein interaction, nuclear localization, and apoptosis signaling in human cancer cells. J Cancer Res Clin Oncol (2016) 0.75
A standard variation file format for human genome sequences. Genome Biol (2010) 7.83
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res (2007) 6.48
Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. Am J Hum Genet (2011) 3.43
A probabilistic disease-gene finder for personal genomes. Genome Res (2011) 3.23
Recoding: translational bifurcations in gene expression. Gene (2002) 2.72
An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci U S A (2008) 2.54
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol (2010) 2.36
Deletion of selenoprotein P alters distribution of selenium in the mouse. J Biol Chem (2003) 2.27
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences. Nucleic Acids Res (2011) 2.16
A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting. Virol J (2009) 1.69
Comparison of approaches for rational siRNA design leading to a new efficient and transparent method. Nucleic Acids Res (2007) 1.68
Discovery of a small arterivirus gene that overlaps the GP5 coding sequence and is important for virus production. J Gen Virol (2011) 1.61
Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation. Nucleic Acids Res (2007) 1.55
Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Discov Med (2011) 1.52
Screening the SPO11 and EIF5A2 genes in a population of infertile men. Fertil Steril (2005) 1.51
Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. EMBO J (2003) 1.51
Observation of dually decoded regions of the human genome using ribosome profiling data. Genome Res (2012) 1.50
NS1' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness. J Virol (2009) 1.50
Readthrough of dystrophin stop codon mutations induced by aminoglycosides. Ann Neurol (2004) 1.47
P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA (2004) 1.46
RECODE 2003. Nucleic Acids Res (2003) 1.46
Recoding elements located adjacent to a subset of eukaryal selenocysteine-specifying UGA codons. EMBO J (2005) 1.45
Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element. Nucleic Acids Res (2011) 1.44
Recoding in bacteriophages and bacterial IS elements. Trends Genet (2006) 1.43
Pyrrolysine and selenocysteine use dissimilar decoding strategies. J Biol Chem (2005) 1.43
VAAST 2.0: improved variant classification and disease-gene identification using a conservation-controlled amino acid substitution matrix. Genet Epidemiol (2013) 1.42
Quantitative measures for the management and comparison of annotated genomes. BMC Bioinformatics (2009) 1.33
Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma. Virol J (2008) 1.33
Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression. Genome Biol (2005) 1.33
Programmed ribosomal frameshifting in decoding the SARS-CoV genome. Virology (2005) 1.33
uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs. Proc Natl Acad Sci U S A (2008) 1.33
Release factor 2 frameshifting sites in different bacteria. EMBO Rep (2002) 1.29
Computational identification of putative programmed translational frameshift sites. Bioinformatics (2002) 1.25
Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1). Proc Natl Acad Sci U S A (2010) 1.24
The selenium-rich C-terminal domain of mouse selenoprotein P is necessary for the supply of selenium to brain and testis but not for the maintenance of whole body selenium. J Biol Chem (2007) 1.22
Efficient -2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein. Proc Natl Acad Sci U S A (2012) 1.22
Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides. RNA (2004) 1.21
Genome-wide analysis of human disease alleles reveals that their locations are correlated in paralogous proteins. PLoS Comput Biol (2008) 1.20
Genome-based peptide fingerprint scanning. Proc Natl Acad Sci U S A (2002) 1.18
Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res (2002) 1.18
Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5. Nucleic Acids Res (2011) 1.18
Uteroplacental insufficiency increases visceral adiposity and visceral adipose PPARgamma2 expression in male rat offspring prior to the onset of obesity. Early Hum Dev (2010) 1.17
Programmed translational -1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs. EMBO J (2003) 1.16
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res (2009) 1.15
Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA (2003) 1.10
Maintenance of the correct open reading frame by the ribosome. EMBO Rep (2003) 1.09
A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. Mol Biol Evol (2011) 1.08
Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses. Virology (2010) 1.08
Influence of the stacking potential of the base 3' of tandem shift codons on -1 ribosomal frameshifting used for gene expression. RNA (2002) 1.08
A profusion of upstream open reading frame mechanisms in polyamine-responsive translational regulation. Nucleic Acids Res (2009) 1.07
Production of selenoprotein P (Sepp1) by hepatocytes is central to selenium homeostasis. J Biol Chem (2012) 1.06
Genome Annotation and Curation Using MAKER and MAKER-P. Curr Protoc Bioinformatics (2014) 1.05
rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinformatics (2013) 1.04
Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species. J Mol Biol (2004) 1.04
Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site. Proc Natl Acad Sci U S A (2012) 1.03
Identification of polymorphisms in the Hrb, GOPC, and Csnk2a2 genes in two men with globozoospermia. J Androl (2006) 1.01
Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli. J Bacteriol (2005) 1.00
Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome. Mar Genomics (2012) 0.99
Epitopes derived by incidental translational frameshifting give rise to a protective CTL response. J Immunol (2006) 0.99
Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome. Proc Natl Acad Sci U S A (2011) 0.98
Frameshifting in alphaviruses: a diversity of 3' stimulatory structures. J Mol Biol (2010) 0.96
Artificial neural network prediction of antisense oligodeoxynucleotide activity. Nucleic Acids Res (2002) 0.95
Factors that influence selection of coding resumption sites in translational bypassing: minimal conventional peptidyl-tRNA:mRNA pairing can suffice. J Biol Chem (2004) 0.95
Polyamine sensing during antizyme mRNA programmed frameshifting. Biochem Biophys Res Commun (2005) 0.93
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics (2006) 0.92
Molecular biology. Translation goes global. Science (2011) 0.91
Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA. EMBO J (2008) 0.90
Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database. J Am Med Inform Assoc (2012) 0.90
Translation: duality in the genetic code. Nature (2007) 0.90
Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses. Virol J (2009) 0.89
Identification of novel polymorphisms in the nuclear protein genes and their relationship with human sperm protamine deficiency and severe male infertility. Fertil Steril (2006) 0.87
Identification of the nature of reading frame transitions observed in prokaryotic genomes. Nucleic Acids Res (2013) 0.86
Acid/base-triggered switching of circularly polarized luminescence and electronic circular dichroism in organic and organometallic helicenes. Chemistry (2014) 0.86
Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses. Virol J (2009) 0.86