Published in Nucleic Acids Res on December 29, 2009
Characterizing and measuring bias in sequence data. Genome Biol (2013) 4.39
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Cloning-independent and counterselectable markerless mutagenesis system in Streptococcus mutans. Appl Environ Microbiol (2011) 1.09
Rapid, modular and reliable construction of complex mammalian gene circuits. Nucleic Acids Res (2013) 1.02
Global analysis of apicomplexan protein S-acyl transferases reveals an enzyme essential for invasion. Traffic (2013) 1.01
Pseudoplusia includens densovirus genome organization and expression strategy. J Virol (2012) 0.99
Efficacy of a Plasmodium vivax malaria vaccine using ChAd63 and modified vaccinia Ankara expressing thrombospondin-related anonymous protein as assessed with transgenic Plasmodium berghei parasites. Infect Immun (2013) 0.97
The malarial serine protease SUB1 plays an essential role in parasite liver stage development. PLoS Pathog (2013) 0.91
A Plasmodium phospholipase is involved in disruption of the liver stage parasitophorous vacuole membrane. PLoS Pathog (2015) 0.90
A genome-scale vector resource enables high-throughput reverse genetic screening in a malaria parasite. Cell Host Microbe (2015) 0.90
New LIC vectors for production of proteins from genes containing rare codons. J Struct Funct Genomics (2013) 0.89
PlasmoGEM, a database supporting a community resource for large-scale experimental genetics in malaria parasites. Nucleic Acids Res (2015) 0.82
Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa. Mol Biol Evol (2013) 0.81
Genetic rearrangements of variable di-residue (RVD)-containing repeat arrays in a baculoviral TALEN system. Mol Ther Methods Clin Dev (2014) 0.79
SMRT Sequencing of Long Tandem Nucleotide Repeats in SCA10 Reveals Unique Insight of Repeat Expansion Structure. PLoS One (2015) 0.78
A deep coverage Dictyostelium discoideum genomic DNA library replicates stably in Escherichia coli. Genomics (2015) 0.78
High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events. Front Plant Sci (2016) 0.77
Current and future resources for functional metagenomics. Front Microbiol (2015) 0.77
Transposable element 'roo' attaches to nuclear matrix of the Drosophila melanogaster. J Insect Sci (2013) 0.77
pEVL: A Linear Plasmid for Generating mRNA IVT Templates With Extended Encoded Poly(A) Sequences. Mol Ther Nucleic Acids (2016) 0.76
Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries. Microbiome (2015) 0.76
Reliable handling of highly A/T-rich genomic DNA for efficient generation of knockin strains of Dictyostelium discoideum. BMC Biotechnol (2016) 0.75
Targeted Deletion of a Plasmodium Site-2 Protease Impairs Life Cycle Progression in the Mammalian Host. PLoS One (2017) 0.75
Isolation of putative FOXO1 genomic elements using an improved in vitro technique to isolate genomic regulatory sequences. Gene (2010) 0.75
A strategy for enhanced circular DNA construction efficiency based on DNA cyclization after microbial transformation. Microb Cell Fact (2015) 0.75
Engineering of an elastic scaffolding polyprotein based on an SH3-binding intrinsically disordered titin PEVK module. Protein Expr Purif (2012) 0.75
Sequencing of long stretches of repetitive DNA. Sci Rep (2016) 0.75
Recombineering in Streptococcus mutans Using Direct Repeat-Mediated Cloning-Independent Markerless Mutagenesis (DR-CIMM). Front Cell Infect Microbiol (2017) 0.75
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
Next-generation DNA sequencing. Nat Biotechnol (2008) 34.95
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2007) 11.24
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol (2002) 8.07
Shotgun sequence assembly and recent segmental duplications within the human genome. Nature (2004) 7.91
Promoter occlusion: transcription through a promoter may inhibit its activity. Cell (1982) 4.43
Transcription from efficient promoters can interfere with plasmid replication and diminish expression of plasmid specified genes. EMBO J (1982) 4.26
Positive selection of a gene family during the emergence of humans and African apes. Nature (2001) 3.68
Base composition bias might result from competition for metabolic resources. Trends Genet (2002) 3.17
Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Nature (2002) 3.01
Dissection of IncP conjugative plasmid transfer: definition of the transfer region Tra2 by mobilization of the Tra1 region in trans. J Bacteriol (1992) 2.91
What would you do if you could sequence everything? Nat Biotechnol (2008) 2.89
Tracing the evolution of gene loss in obligate bacterial symbionts. Curr Opin Microbiol (2003) 2.25
Regional FMRP deficits and large repeat expansions into the full mutation range in a new Fragile X premutation mouse model. Gene (2007) 2.01
FMR1: a gene with three faces. Biochim Biophys Acta (2009) 1.77
Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones. Genome Res (2002) 1.76
The Tre2 (USP6) oncogene is a hominoid-specific gene. Proc Natl Acad Sci U S A (2003) 1.62
Closing gaps in the human genome using sequencing by synthesis. Genome Biol (2009) 1.46
The intrinsically unstable life of DNA triplet repeats associated with human hereditary disorders. Prog Nucleic Acid Res Mol Biol (2001) 1.44
Lentivirus envelope sequences and proviral genomes are stabilized in Escherichia coli when cloned in low-copy-number plasmid vectors. Gene (1993) 1.28
Bidirectional replication from an internal ori site of the linear N15 plasmid prophage. Nucleic Acids Res (2003) 1.22
From genome to proteome: developing expression clone resources for the human genome. Hum Mol Genet (2006) 1.21
Escherichia coli with a linear genome. EMBO Rep (2007) 1.16
Generation of microgram quantities of trinucleotide repeat tracts of defined length, interspersion pattern, and orientation. Anal Biochem (1999) 1.15
The protelomerase of temperate Escherichia coli phage N15 has cleaving-joining activity. Proc Natl Acad Sci U S A (2000) 1.09
Segments missing from the draft human genome sequence can be isolated by transformation-associated recombination cloning in yeast. EMBO Rep (2003) 1.06
Partition of the linear plasmid N15: interactions of N15 partition functions with the sop locus of the F plasmid. J Bacteriol (1999) 1.06
Mechanisms of replication and telomere resolution of the linear plasmid prophage N15. FEMS Microbiol Lett (2003) 1.06
In vivo loss of supercoiled DNA carrying a palindromic sequence. Mol Gen Genet (1986) 0.97
Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats. Nucleic Acids Res (2008) 0.92
Use of a linear multicopy vector based on the mini-replicon of temperate coliphage N15 for cloning DNA with abnormal secondary structures. Nucleic Acids Res (1999) 0.92
Instability of plasmid DNA maintenance caused by transcription of poly(dT)-containing sequences in Escherichia coli. Gene (1994) 0.90
Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis. Bioinformatics (2008) 0.90
Increased efficiency of cloning large DNA fragments using a lower copy number plasmid. Biotechniques (2002) 0.86
Functional characterization of the repA replication gene of linear plasmid prophage N15. Res Microbiol (2005) 0.85
Recombineering linear DNA that replicate stably in E. coli. Plasmid (2007) 0.85
Tightly regulated, high-level expression from controlled copy number vectors based on the replicon of temperate phage N15. Gene (2007) 0.85
Genetic stability and DNA rearrangements associated with a 2 x 1.1-Kb perfect palindrome in Escherichia coli. Mol Gen Genet (1998) 0.85
A status report on the sequencing and annotation of the P. falciparum genome. Mol Biochem Parasitol (2001) 0.81
[Expression regulation of the protelomerase gene of the bacteriophage N15]. Mol Gen Mikrobiol Virusol (2004) 0.78
Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci U S A (2002) 9.21
Regional FMRP deficits and large repeat expansions into the full mutation range in a new Fragile X premutation mouse model. Gene (2007) 2.01
Repeat-induced epigenetic changes in intron 1 of the frataxin gene and its consequences in Friedreich ataxia. Nucleic Acids Res (2007) 1.94
Assembly of viral metagenomes from yellowstone hot springs. Appl Environ Microbiol (2008) 1.86
The insertional history of an active family of L1 retrotransposons in humans. Genome Res (2004) 1.71
Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnol Biofuels (2011) 1.55
The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PLoS One (2011) 1.48
An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics (2003) 1.44
Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119. Genome Announc (2013) 1.42
Fitness cost of LINE-1 (L1) activity in humans. Proc Natl Acad Sci U S A (2006) 1.36
The fragile X syndrome repeats form RNA hairpins that do not activate the interferon-inducible protein kinase, PKR, but are cut by Dicer. Nucleic Acids Res (2003) 1.35
Ovarian abnormalities in a mouse model of fragile X primary ovarian insufficiency. J Histochem Cytochem (2012) 1.29
The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max. Nucleic Acids Res (2006) 1.28
ATR protects the genome against CGG.CCG-repeat expansion in Fragile X premutation mice. Nucleic Acids Res (2007) 1.23
Long CGG-repeat tracts are toxic to human cells: implications for carriers of Fragile X premutation alleles. FEBS Lett (2005) 1.23
Chromatin remodeling in the noncoding repeat expansion diseases. J Biol Chem (2008) 1.22
A mouse model of the fragile X premutation: effects on behavior, dendrite morphology, and regional rates of cerebral protein synthesis. Neurobiol Dis (2011) 1.18
Repeat expansion affects both transcription initiation and elongation in friedreich ataxia cells. J Biol Chem (2010) 1.17
SIRT1 inhibition alleviates gene silencing in Fragile X mental retardation syndrome. PLoS Genet (2008) 1.16
Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. J Bacteriol (2012) 1.14
Genome physical mapping with large-insert bacterial clones by fingerprint analysis: methodologies, source clone genome coverage, and contig map quality. Genomics (2004) 1.13
Somatic expansion in mouse and human carriers of fragile X premutation alleles. Hum Mutat (2012) 1.09
Potassium bromate, a potent DNA oxidizing agent, exacerbates germline repeat expansion in a fragile X premutation mouse model. Hum Mutat (2010) 1.08
The mismatch repair protein MSH2 is rate limiting for repeat expansion in a fragile X premutation mouse model. Hum Mutat (2014) 1.07
Functional viral metagenomics and the next generation of molecular tools. Trends Microbiol (2009) 1.06
ATM and ATR protect the genome against two different types of tandem repeat instability in Fragile X premutation mice. Nucleic Acids Res (2009) 1.06
Expression profile of the channel catfish spleen: analysis of genes involved in immune functions. Mar Biotechnol (NY) (2002) 1.04
The distribution of repressive histone modifications on silenced FMR1 alleles provides clues to the mechanism of gene silencing in fragile X syndrome. Hum Mol Genet (2010) 1.04
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors. Nucleic Acids Res (2010) 1.03
Organization of the Hox gene cluster of the silkworm, Bombyx mori: a split of the Hox cluster in a non-Drosophila insect. Dev Genes Evol (2004) 1.01
Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum. Nucleic Acids Res (2005) 1.01
An integrated BAC and genome sequence physical map of Phytophthora sojae. Mol Plant Microbe Interact (2006) 1.01
Extensive conserved synteny of genes between the karyotypes of Manduca sexta and Bombyx mori revealed by BAC-FISH mapping. PLoS One (2009) 0.97
Artificial chromosome formation in maize (Zea mays L.). Chromosoma (2008) 0.96
Proteome analysis of Edwardsiella ictaluri. Proteomics (2009) 0.96
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development. Genetics (2005) 0.95
Impaired activity-dependent FMRP translation and enhanced mGluR-dependent LTD in Fragile X premutation mice. Hum Mol Genet (2012) 0.95
Identification of fragile X syndrome specific molecular markers in human fibroblasts: a useful model to test the efficacy of therapeutic drugs. Hum Mutat (2014) 0.95
Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7. J Bacteriol (2011) 0.94
Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs. Microb Ecol (2015) 0.93
Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087. Genome Announc (2013) 0.92
Chromosome fragility and the abnormal replication of the FMR1 locus in fragile X syndrome. Hum Mol Genet (2014) 0.92
Ancient repeated DNA elements and the regulation of the human frataxin promoter. Genomics (2005) 0.91
One-plasmid tunable coexpression for mycobacterial protein-protein interaction studies. Protein Sci (2009) 0.88
NF-Y, AP2, Nrf1 and Sp1 regulate the fragile X-related gene 2 (FXR2). Biochem J (2006) 0.88
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park. Stand Genomic Sci (2012) 0.88
Is Friedreich ataxia an epigenetic disorder? Clin Epigenetics (2012) 0.87
The AUUCU repeats responsible for spinocerebellar ataxia type 10 form unusual RNA hairpins. J Biol Chem (2005) 0.87
A plant-transformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence. Genome (2007) 0.86
Translational machinery of channel catfish: II. Complementary DNA and expression of the complete set of 47 60S ribosomal proteins. Gene (2003) 0.86
Functional annotation of Fibrobacter succinogenes S85 carbohydrate active enzymes. Appl Biochem Biotechnol (2010) 0.86
Rapid development of gene-tagged microsatellite markers from bacterial artificial chromosome clones using anchored TAA repeat primers. Biotechniques (2003) 0.85
Gender and cell-type-specific effects of the transcription-coupled repair protein, ERCC6/CSB, on repeat expansion in a mouse model of the fragile X-related disorders. Hum Mutat (2014) 0.84
Development of stable reporter system cloning luxCDABE genes into chromosome of Salmonella enterica serotypes using Tn7 transposon. BMC Microbiol (2010) 0.84
Mining Dictyoglomus turgidum for enzymatically active carbohydrases. Appl Biochem Biotechnol (2010) 0.84
Isolation independent methods of characterizing phage communities 2: characterizing a metagenome. Methods Mol Biol (2009) 0.84
The roles of Sp1, Sp3, USF1/USF2 and NRF-1 in the regulation and three-dimensional structure of the Fragile X mental retardation gene promoter. Biochem J (2005) 0.83
The transcription-coupled repair protein ERCC6/CSB also protects against repeat expansion in a mouse model of the fragile X premutation. Hum Mutat (2015) 0.82
The role of DNA damage response pathways in chromosome fragility in Fragile X syndrome. Nucleic Acids Res (2009) 0.82
When secondary comes first--the importance of non-canonical DNA structures. Biochimie (2012) 0.80
Chromatin changes in the development and pathology of the Fragile X-associated disorders and Friedreich ataxia. Biochim Biophys Acta (2012) 0.80
Proteomic analysis of the fish pathogen Flavobacterium columnare. Proteome Sci (2010) 0.79
Construction and evaluation of an Edwardsiella ictaluri fhuC mutant. Vet Microbiol (2012) 0.78
Tricarboxylic acid cycle and one-carbon metabolism pathways are important in Edwardsiella ictaluri virulence. PLoS One (2013) 0.78
On the role of centromere dispersion in stability of linear bacterial plasmids. Plasmid (2010) 0.77
Importance of skin abrasion as a primary site of adhesion for Edwardsiella ictaluri and impact on invasion and systematic infection in channel catfish Ictalurus punctatus. Vet Microbiol (2010) 0.76
DNA is structured as a linear "jigsaw puzzle" in the genomes of Arabidopsis, rice, and budding yeast. Genome (2013) 0.76
ExCyto PCR amplification. PLoS One (2010) 0.75