Published in PLoS One on December 29, 2009
Phylogeny disambiguates the evolution of heat-shock cis-regulatory elements in Drosophila. PLoS One (2010) 0.84
Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel. Proc Natl Acad Sci U S A (2014) 0.83
Organization and evolution of hsp70 clusters strikingly differ in two species of Stratiomyidae (Diptera) inhabiting thermally contrasting environments. BMC Evol Biol (2011) 0.81
The genome sequence of Drosophila melanogaster. Science (2000) 74.32
Prediction of complete gene structures in human genomic DNA. J Mol Biol (1997) 58.76
Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res (2004) 24.52
Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Gene expression during the life cycle of Drosophila melanogaster. Science (2002) 11.36
RNA polymerase is poised for activation across the genome. Nat Genet (2007) 9.57
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. Genetics (2004) 8.40
The evolution of transcriptional regulation in eukaryotes. Mol Biol Evol (2003) 7.72
FlyBase: genomes by the dozen. Nucleic Acids Res (2006) 6.96
The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes. Genome Res (2002) 6.61
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol (2007) 6.18
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol (2002) 5.80
A Drosophila complementary DNA resource. Science (2000) 4.98
Molecular phylogeny and divergence times of drosophilid species. Mol Biol Evol (1995) 4.33
Large clusters of co-expressed genes in the Drosophila genome. Nature (2002) 3.76
Protein traffic on the heat shock promoter: parking, stalling, and trucking along. Cell (1993) 3.43
Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell (1994) 3.33
Insertion site preferences of the P transposable element in Drosophila melanogaster. Proc Natl Acad Sci U S A (2000) 3.22
Evolution of hybrid dysgenesis determinants in Drosophila melanogaster. Proc Natl Acad Sci U S A (1983) 3.12
The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Mol Cell Biol (2000) 2.92
Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci U S A (2004) 2.65
Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila. Science (2005) 2.56
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. Nucleic Acids Res (2004) 2.47
Deleterious consequences of Hsp70 overexpression in Drosophila melanogaster larvae. Cell Stress Chaperones (1997) 1.96
Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res (2002) 1.82
Improved repeat identification and masking in Dipterans. Gene (2006) 1.70
Drosophila biology in the genomic age. Genetics (2007) 1.66
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res (2008) 1.63
World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster. Mol Ecol (2004) 1.56
Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes. J Mol Evol (2002) 1.53
High rate of recent transposable element-induced adaptation in Drosophila melanogaster. PLoS Biol (2008) 1.52
Distribution and conservation of mobile elements in the genus Drosophila. Mol Biol Evol (1986) 1.46
GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter. Mol Cell Biol (2002) 1.36
Molecular architecture of the hsp70 promoter after deletion of the TATA box or the upstream regulation region. Mol Cell Biol (1997) 1.28
Identification of transposable elements using multiple alignments of related genomes. Genome Res (2005) 1.17
Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol (2008) 1.17
Genetic evidence for adaptation-driven incipient speciation of Drosophila melanogaster along a microclimatic contrast in "Evolution Canyon," Israel. Proc Natl Acad Sci U S A (2001) 1.15
Hsp70 duplication in the Drosophila melanogaster species group: how and when did two become five? Mol Biol Evol (2001) 1.13
S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster. Curr Biol (2002) 1.11
Identification of sequences involved in the transcriptional control of a Drosophila heat-shock gene. J Biol Chem (1984) 1.10
A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter. Plant Cell (2005) 1.09
Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster. Mol Biol Evol (2004) 1.08
A Drosophila melanogaster strain from sub-equatorial Africa has exceptional thermotolerance but decreased Hsp70 expression. J Exp Biol (2001) 1.04
Heat-shock promoters: targets for evolution by P transposable elements in Drosophila. PLoS Genet (2006) 1.02
Adaptive differentiation of thermotolerance in Drosophila along a microclimatic gradient. Heredity (Edinb) (2006) 0.94
Effect of divergence time and recombination rate on molecular evolution of Drosophila INE-1 transposable elements and other candidates for neutrally evolving sites. J Mol Evol (2007) 0.93
Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster. Genetics (2006) 0.91
Evolution and arrangement of the hsp70 gene cluster in two closely related species of the virilis group of Drosophila. Chromosoma (2004) 0.90
Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana. Mol Genet Genomics (2002) 0.88
PromAn: an integrated knowledge-based web server dedicated to promoter analysis. Nucleic Acids Res (2006) 0.87
Evidence for the adaptive significance of an LTR retrotransposon sequence in a Drosophila heterochromatic gene. BMC Evol Biol (2002) 0.86
LTR retrotransposon-gene associations in Drosophila melanogaster. J Mol Evol (2006) 0.84
Evolution of P elements in natural populations of Drosophila willistoni and D. sturtevanti. Genetics (2004) 0.82
Triton, a novel family of miniature inverted-repeat transposable elements (MITEs) in Trichosanthes kirilowii Maximowicz and its effect on gene regulation. Biochem Biophys Res Commun (2007) 0.79
Location of P element insertions in the proximal promoter region of Hsp70A is consequential for gene expression and correlated with fecundity in Drosophila melanogaster. Cell Stress Chaperones (2008) 0.78
Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes. J Mol Evol (2002) 1.53
Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements. Mol Biol Evol (2003) 1.21
Response to natural and laboratory selection at the Drosophila hsp70 genes. Evolution (2002) 1.13
Thermal preconditioning and heat-shock protein 72 preserve synaptic transmission during thermal stress. J Neurosci (2002) 1.09
Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster. Mol Biol Evol (2004) 1.08
What evidence is there for the existence of individual genes with antagonistic pleiotropic effects? Mech Ageing Dev (2005) 1.03
Effect of heat shock, pretreatment and hsp70 copy number on wing development in Drosophila melanogaster. Mol Ecol (2003) 1.02
Heat-shock promoters: targets for evolution by P transposable elements in Drosophila. PLoS Genet (2006) 1.02
Evolution of thermotolerance and the heat-shock response: evidence from inter/intraspecific comparison and interspecific hybridization in the virilis species group of Drosophila. I. Thermal phenotype. J Exp Biol (2003) 0.98
Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster. Genetics (2006) 0.91
Evolution and arrangement of the hsp70 gene cluster in two closely related species of the virilis group of Drosophila. Chromosoma (2004) 0.90
Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism. BMC Genomics (2005) 0.84
Phylogeny disambiguates the evolution of heat-shock cis-regulatory elements in Drosophila. PLoS One (2010) 0.84
Ecological and evolutionary functional genomics--how can it contribute to the risk assessment of chemicals? Environ Sci Technol (2011) 0.83
Hsp70 and thermal pretreatment mitigate developmental damage caused by mitotic poisons in Drosophila. Cell Stress Chaperones (2002) 0.80
Dropping like flies: environmentally induced impairment and protection of locomotor performance in adult Drosophila melanogaster. Physiol Biochem Zool (2003) 0.79
Location of P element insertions in the proximal promoter region of Hsp70A is consequential for gene expression and correlated with fecundity in Drosophila melanogaster. Cell Stress Chaperones (2008) 0.78
Unusual arrangement of the hsp68 locus in the virilis species group of Drosophila implicates evolutionary loss of an hsp68 gene. Genome (2005) 0.75
Guest comment: Environmental genomics focus issue. Environ Sci Technol (2011) 0.75