Published in J Biotechnol on January 08, 2010
Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules. J Chem Phys (2016) 0.79
The best models of metabolism. Wiley Interdiscip Rev Syst Biol Med (2017) 0.75
Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math Biosci (2009) 2.58
Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae. Nature (2005) 1.76
Parameter estimation in biochemical systems models with alternating regression. Theor Biol Med Model (2006) 1.69
Identification of metabolic system parameters using global optimization methods. Theor Biol Med Model (2006) 1.59
System estimation from metabolic time-series data. Bioinformatics (2008) 1.43
Mechanistic simulations of inflammation: current state and future prospects. Math Biosci (2008) 1.40
Neural-network-based parameter estimation in S-system models of biological networks. Genome Inform (2003) 1.37
Automated smoother for the numerical decoupling of dynamics models. BMC Bioinformatics (2007) 1.27
Priming nonlinear searches for pathway identification. Theor Biol Med Model (2004) 1.22
Collective decision making in bacterial viruses. Biophys J (2008) 1.15
Mathematical modeling of pathogenicity of Cryptococcus neoformans. Mol Syst Biol (2008) 1.14
Parameter optimization in S-system models. BMC Syst Biol (2008) 1.12
Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models. J Theor Biol (2004) 1.11
Identification of neutral biochemical network models from time series data. BMC Syst Biol (2009) 1.10
A multivariate prediction model for microarray cross-hybridization. BMC Bioinformatics (2006) 1.07
An automated procedure for the extraction of metabolic network information from time series data. J Bioinform Comput Biol (2006) 1.06
Yeast sphingolipid metabolism: clues and connections. Biochem Cell Biol (2004) 1.05
Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. PLoS Comput Biol (2011) 1.02
Complex coordination of multi-scale cellular responses to environmental stress. Mol Biosyst (2010) 1.02
Optimization of biotechnological systems through geometric programming. Theor Biol Med Model (2007) 1.00
Estimation of dynamic flux profiles from metabolic time series data. BMC Syst Biol (2012) 1.00
A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose. Biochem J (2003) 0.96
Computational systems analysis of dopamine metabolism. PLoS One (2008) 0.96
Controllability of non-linear biochemical systems. Math Biosci (2005) 0.95
Constructing stochastic models from deterministic process equations by propensity adjustment. BMC Syst Biol (2011) 0.95
Probabilistic risk assessment of reproductive effects of polychlorinated biphenyls on bottlenose dolphins (Tursiops truncatus) from the Southeast United States Coast. Environ Toxicol Chem (2002) 0.92
Systems biology and its potential role in radiobiology. Radiat Environ Biophys (2007) 0.90
Yield optimization of regulated metabolic systems using deterministic branch-and-reduce methods. Biotechnol Bioeng (2008) 0.89
Computation and analysis of time-dependent sensitivities in Generalized Mass Action systems. J Theor Biol (2005) 0.88
Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach. PLoS Comput Biol (2012) 0.87
Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift. Theor Biol Med Model (2007) 0.87
Mathematical modeling and validation of the ergosterol pathway in Saccharomyces cerevisiae. PLoS One (2011) 0.84
Coordination of rapid sphingolipid responses to heat stress in yeast. PLoS Comput Biol (2013) 0.84
The internal state of medium spiny neurons varies in response to different input signals. BMC Syst Biol (2010) 0.83
Improved methods for the mathematically controlled comparison of biochemical systems. Theor Biol Med Model (2004) 0.83
Computational analysis of determinants of dopamine (DA) dysfunction in DA nerve terminals. Synapse (2009) 0.83
The potential for signal integration and processing in interacting MAP kinase cascades. J Theor Biol (2007) 0.83
Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools. PLoS One (2013) 0.83
Biochemical pathway modeling tools for drug target detection in cancer and other complex diseases. Methods Enzymol (2011) 0.83
Parameter estimation in modulated, unbranched reaction chains within biochemical systems. Comput Biol Chem (2005) 0.82
Mathematical modeling of monolignol biosynthesis in Populus xylem. Math Biosci (2010) 0.82
Biological systems modeling and analysis: a biomolecular technique of the twenty-first century. J Biomol Tech (2006) 0.82
A guide to biochemical systems modeling of sphingolipids for the biochemist. Methods Enzymol (2007) 0.81
Flux duality in nonlinear GMA systems: implications for metabolic engineering. J Biotechnol (2009) 0.80
Analysis of operating principles with S-system models. Math Biosci (2011) 0.79
Impact of delays and noise on dopamine signal transduction. Stud Health Technol Inform (2011) 0.79
New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model. Mol Biosyst (2015) 0.78
Function and design of the Nox1 system in vascular smooth muscle cells. BMC Syst Biol (2013) 0.78
Impact of delays and noise on dopamine signal transduction. In Silico Biol (2010) 0.77
A feel for systems. Mol Syst Biol (2012) 0.77
Dynamics of Positional Enrichment: Theoretical Development and Application to Carbon Labeling in Zymomonas mobilis. Biochem Eng J (2008) 0.77
Estimating parameters for generalized mass action models with connectivity information. BMC Bioinformatics (2009) 0.77
An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.76
Statistical inference methods for sparse biological time series data. BMC Syst Biol (2011) 0.76
Concentration-dependent effects on the rapid and efficient activation of the MAP kinase signaling cascade. Proteomics (2007) 0.76
Systems analysis of the role of bone morphogenic protein 4 in endothelial inflammation. Ann Biomed Eng (2009) 0.76
Stepwise Inference of Likely Dynamic Flux Distributions from Metabolic Time Series Data. Bioinformatics (2017) 0.75
It happened fifty years ago…. Math Biosci (2017) 0.75
Advanced methods in molecular systems biology. J Biotechnol (2010) 0.75