Published in EMBO Rep on January 08, 2010
RNA sequencing: advances, challenges and opportunities. Nat Rev Genet (2010) 8.96
Extensive alternative polyadenylation during zebrafish development. Genome Res (2012) 2.07
How cells get the message: dynamic assembly and function of mRNA-protein complexes. Nat Rev Genet (2013) 1.67
The human cytoplasmic RNA terminal U-transferase ZCCHC11 targets histone mRNAs for degradation. RNA (2010) 1.33
An overview of pre-ribosomal RNA processing in eukaryotes. Wiley Interdiscip Rev RNA (2014) 1.30
Cytoplasmic RNA: a case of the tail wagging the dog. Nat Rev Mol Cell Biol (2013) 1.24
5'-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay. Nucleic Acids Res (2010) 1.22
Specificity factors in cytoplasmic polyadenylation. Wiley Interdiscip Rev RNA (2013) 1.15
Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1. PLoS Genet (2012) 1.15
Gradual processing of the ITS1 from the nucleolus to the cytoplasm during synthesis of the human 18S rRNA. Nucleic Acids Res (2013) 1.11
Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity. Wiley Interdiscip Rev RNA (2013) 1.04
The human nuclear poly(a)-binding protein promotes RNA hyperadenylation and decay. PLoS Genet (2013) 1.01
Air1 zinc knuckles 4 and 5 and a conserved IWRXY motif are critical for the function and integrity of the Trf4/5-Air1/2-Mtr4 polyadenylation (TRAMP) RNA quality control complex. J Biol Chem (2011) 1.00
PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif. RNA (2011) 0.99
Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA. Mol Cell Biol (2010) 0.98
The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA. RNA (2014) 0.94
Nuclear noncoding RNA surveillance: is the end in sight? Trends Genet (2012) 0.92
Tri-snRNP-associated proteins interact with subunits of the TRAMP and nuclear exosome complexes, linking RNA decay and pre-mRNA splicing. RNA Biol (2012) 0.90
Inhibition of polyadenylation reduces inflammatory gene induction. RNA (2012) 0.89
A functional interface at the rDNA connects rRNA synthesis, pre-rRNA processing and nucleolar surveillance in budding yeast. PLoS One (2011) 0.89
mRNA 3' tagging is induced by nonsense-mediated decay and promotes ribosome dissociation. Mol Cell Biol (2012) 0.87
Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis. Nucleic Acids Res (2014) 0.87
Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues. BMC Biotechnol (2013) 0.84
CRM1 and its ribosome export adaptor NMD3 localize to the nucleolus and affect rRNA synthesis. Nucleus (2013) 0.83
Inhibition and avoidance of mRNA degradation by RNA viruses. Curr Opin Microbiol (2012) 0.82
Diurnal Oscillations in Liver Mass and Cell Size Accompany Ribosome Assembly Cycles. Cell (2017) 0.81
Defective structural RNA processing in relapsing-remitting multiple sclerosis. Genome Biol (2015) 0.78
The new (dis)order in RNA regulation. Cell Commun Signal (2016) 0.78
Identification of a recently active mammalian SINE derived from ribosomal RNA. Genome Biol Evol (2015) 0.78
Insight into the RNA Exosome Complex Through Modeling Pontocerebellar Hypoplasia Type 1b Disease Mutations in Yeast. Genetics (2016) 0.77
Oligoadenylation of 3' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells. RNA (2016) 0.77
Duration of the first steps of the human rRNA processing. Nucleus (2013) 0.77
Reduced expression of the mouse ribosomal protein Rpl17 alters the diversity of mature ribosomes by enhancing production of shortened 5.8S rRNA. RNA (2015) 0.76
Attacked from All Sides: RNA Decay in Antiviral Defense. Viruses (2017) 0.75
Mutations in Mtr4 Structural Domains Reveal Their Important Role in Regulating tRNAiMet Turnover in Saccharomyces cerevisiae and Mtr4p Enzymatic Activities In Vitro. PLoS One (2016) 0.75
Genome-Wide Analysis of PAPS1-Dependent Polyadenylation Identifies Novel Roles for Functionally Specialized Poly(A) Polymerases in Arabidopsis thaliana. PLoS Genet (2015) 0.75
Certain adenylated non-coding RNAs, including 5' leader sequences of primary microRNA transcripts, accumulate in mouse cells following depletion of the RNA helicase MTR4. PLoS One (2014) 0.75
Inhibition of post-transcriptional steps in ribosome biogenesis confers cytoprotection against chemotherapeutic agents in a p53-dependent manner. Sci Rep (2017) 0.75
Ribosomes Need Straight A's to Sleep. Cell (2017) 0.75
Exosome cofactor hMTR4 competes with export adaptor ALYREF to ensure balanced nuclear RNA pools for degradation and export. EMBO J (2017) 0.75
The economics of ribosome biosynthesis in yeast. Trends Biochem Sci (1999) 15.22
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases. Cell (1997) 8.94
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell (2005) 8.55
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell (2001) 7.79
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell (2005) 7.37
Calcium phosphate-mediated gene transfer: a highly efficient transfection system for stably transforming cells with plasmid DNA. Biotechniques (1990) 6.90
RNA exosome depletion reveals transcription upstream of active human promoters. Science (2008) 6.80
Regulation of HDM2 activity by the ribosomal protein L11. Cancer Cell (2003) 5.44
A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol (2005) 5.43
Ribosome assembly in eukaryotes. Gene (2003) 5.37
The many pathways of RNA degradation. Cell (2009) 5.31
RNA-quality control by the exosome. Nat Rev Mol Cell Biol (2006) 5.26
The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases. Genes Dev (1999) 4.95
The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell Mol Life Sci (2008) 4.87
Ribosomal protein L11 negatively regulates oncoprotein MDM2 and mediates a p53-dependent ribosomal-stress checkpoint pathway. Mol Cell Biol (2003) 4.61
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev (2004) 4.61
Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell (2006) 4.30
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J (2002) 4.13
Inhibition of RNA synthesis by actinomycin D: characteristic dose-response of different RNA species. J Cell Physiol (1970) 3.98
Processing of eukaryotic ribosomal RNA. Prog Nucleic Acid Res Mol Biol (1994) 2.97
RNA quality control in eukaryotes. Cell (2007) 2.83
Degradation of RNA in bacteria: comparison of mRNA and stable RNA. Nucleic Acids Res (2006) 2.80
Essential role of ribosomal protein L11 in mediating growth inhibition-induced p53 activation. EMBO J (2004) 2.59
A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p. Mol Cell Biol (2000) 2.56
The exosome: a multipurpose RNA-decay machine. Trends Biochem Sci (2008) 2.40
Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific. Mol Cell Biol (1987) 2.28
RNA-specific ribonucleotidyl transferases. RNA (2007) 2.15
Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines. Curr Opin Cell Biol (2009) 1.96
Polyadenylation of ribosomal RNA in human cells. Nucleic Acids Res (2006) 1.93
MDMX regulation of p53 response to ribosomal stress. EMBO J (2006) 1.77
Origins and activities of the eukaryotic exosome. J Cell Sci (2009) 1.68
Adenylation and exosome-mediated degradation of cotranscriptionally cleaved pre-messenger RNA in human cells. Mol Cell (2006) 1.67
Persistent synthesis of 5S RNA when production of 28S and 18S ribosomal RNA is inhibited by low doses of actinomycin D. J Cell Physiol (1968) 1.62
Transcription elongation by RNA polymerase I is linked to efficient rRNA processing and ribosome assembly. Mol Cell (2007) 1.59
The nuclear RNA surveillance machinery: the link between ncRNAs and genome structure in budding yeast? Biochim Biophys Acta (2008) 1.45
The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm. Eur J Cell Biol (2004) 1.44
Assays for ribosomal RNA processing and ribosome assembly. Curr Protoc Cell Biol (2008) 1.27
The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance. RNA (2009) 1.24
The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA (2008) 1.09
Actinomycin D stimulates the transcription of rRNA minigenes transfected into mouse cells. Implications for the in vivo hypersensitivity of rRNA gene transcription. Eur J Biochem (1995) 0.98
Processing of the external transcribed spacer of murine rRNA and site of action of actinomycin D. Nucleic Acids Res (1984) 0.89
The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Plant Physiol (2007) 1.50
Functional inactivation of the mouse nucleolar protein Bop1 inhibits multiple steps in pre-rRNA processing and blocks cell cycle progression. J Biol Chem (2002) 1.45
Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis. Mol Cell (2004) 1.42
Assays for ribosomal RNA processing and ribosome assembly. Curr Protoc Cell Biol (2008) 1.27
5'-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay. Nucleic Acids Res (2010) 1.22
The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA (2008) 1.09
Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA. Mol Cell Biol (2010) 0.98
Polarization of host immune responses by helminth-expressed glycans. Ann N Y Acad Sci (2012) 0.97
Restricting conformational flexibility of the switch II region creates a dominant-inhibitory phenotype in Obg GTPase Nog1. Mol Cell Biol (2007) 0.91
Early transcriptional arrest at Escherichia coli rplN and ompX promoters. J Biol Chem (2009) 0.87
Ubiquitin and ubiquitin-like proteins in the nucleolus: multitasking tools for a ribosome factory. Genes Cancer (2010) 0.86
Separation of long RNA by agarose-formaldehyde gel electrophoresis. Anal Biochem (2013) 0.86
The ubiquitin ligase Rsp5 is required for ribosome stability in Saccharomyces cerevisiae. RNA (2011) 0.83
The WD-repeat protein GRWD1: potential roles in myeloid differentiation and ribosome biogenesis. Genomics (2005) 0.83
Kinetic studies of constitutive human granulocyte-macrophage colony stimulating factor (hGM-CSF) expression in continuous culture of Pichia pastoris. Biotechnol Lett (2007) 0.79