Published in Mol Cell Proteomics on January 22, 2010
Eukaryote-like serine/threonine kinases and phosphatases in bacteria. Microbiol Mol Biol Rev (2011) 1.82
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Mol Syst Biol (2012) 1.44
The bacterial phosphoenolpyruvate:carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions. Microbiol Mol Biol Rev (2014) 1.30
Tyrosine phosphorylation and bacterial virulence. Int J Oral Sci (2012) 1.11
Interaction of Mycobacterium tuberculosis elongation factor Tu with GTP is regulated by phosphorylation. J Bacteriol (2011) 1.00
Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Mol Syst Biol (2015) 0.99
A trigger enzyme in Mycoplasma pneumoniae: impact of the glycerophosphodiesterase GlpQ on virulence and gene expression. PLoS Pathog (2011) 0.99
Evaluation and properties of the budding yeast phosphoproteome. Mol Cell Proteomics (2012) 0.96
MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae. Nucleic Acids Res (2014) 0.93
An Essential Poison: Synthesis and Degradation of Cyclic Di-AMP in Bacillus subtilis. J Bacteriol (2015) 0.88
Activity control of the ClpC adaptor McsB in Bacillus subtilis. J Bacteriol (2011) 0.87
The Blueprint of a Minimal Cell: MiniBacillus. Microbiol Mol Biol Rev (2016) 0.85
Bacterial phosphoproteomic analysis reveals the correlation between protein phosphorylation and bacterial pathogenicity. Genomics Proteomics Bioinformatics (2011) 0.85
Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius. Mol Cell Proteomics (2013) 0.84
Mycoplasma pneumoniae, an underutilized model for bacterial cell biology. J Bacteriol (2014) 0.84
Data-driven integration of genome-scale regulatory and metabolic network models. Front Microbiol (2015) 0.83
A novel protein kinase-like domain in a selenoprotein, widespread in the tree of life. PLoS One (2012) 0.82
A serine/threonine phosphatase encoded by MG_207 of Mycoplasma genitalium is critical for its virulence. BMC Microbiol (2013) 0.82
Subunits of the Pyruvate Dehydrogenase Cluster of Mycoplasma pneumoniae Are Surface-Displayed Proteins that Bind and Activate Human Plasminogen. PLoS One (2015) 0.79
Temporal dynamics of the Saccharopolyspora erythraea phosphoproteome. Mol Cell Proteomics (2014) 0.78
Protein kinase/phosphatase function correlates with gliding motility in Mycoplasma pneumoniae. J Bacteriol (2013) 0.78
Phosphoproteome dynamics mediate revival of bacterial spores. BMC Biol (2015) 0.77
The unique serine/threonine phosphatase from the minimal bacterium Mycoplasma synoviae: biochemical characterization and metal dependence. J Biol Inorg Chem (2014) 0.76
Role of Protein Phosphorylation in the Regulation of Cell Cycle and DNA-Related Processes in Bacteria. Front Microbiol (2016) 0.76
Proteomics As a Tool for Studying Bacterial Virulence and Antimicrobial Resistance. Front Microbiol (2016) 0.76
Rhamnose Links Moonlighting Proteins to Membrane Phospholipid in Mycoplasmas. PLoS One (2016) 0.75
The Evolution of Advanced Molecular Diagnostics for the Detection and Characterization of Mycoplasma pneumoniae. Front Microbiol (2016) 0.75
Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase. PLoS One (2015) 0.75
Network of Surface-Displayed Glycolytic Enzymes in Mycoplasma pneumoniae and Their Interactions with Human Plasminogen. Infect Immun (2015) 0.75
Ser/Thr protein kinase PrkC-mediated regulation of GroEL is critical for biofilm formation in Bacillus anthracis. NPJ Biofilms Microbiomes (2017) 0.75
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis (1997) 57.27
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem (2002) 35.30
A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem (2003) 29.58
Essential Bacillus subtilis genes. Proc Natl Acad Sci U S A (2003) 14.01
The SWISS-MODEL Repository and associated resources. Nucleic Acids Res (2008) 11.61
Global transposon mutagenesis and a minimal Mycoplasma genome. Science (1999) 11.36
PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae. Yeast (1996) 8.45
The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res (2004) 8.23
Protein disorder prediction: implications for structural proteomics. Structure (2003) 7.93
Mycoplasma pneumoniae and its role as a human pathogen. Clin Microbiol Rev (2004) 7.51
Antibiotic-resistance cassettes for Bacillus subtilis. Gene (1995) 7.28
Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A (2006) 6.31
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol (2008) 6.24
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science (2009) 5.37
The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system. Proc Natl Acad Sci U S A (1983) 3.96
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. Nucleic Acids Res (2006) 3.76
Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis. J Bacteriol (1995) 3.66
A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments. Cell (2008) 3.57
Epidemiology, clinical manifestations, pathogenesis and laboratory detection of Mycoplasma pneumoniae infections. FEMS Microbiol Rev (2008) 3.20
Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. J Proteome Res (2007) 3.13
Proteogenomic mapping as a complementary method to perform genome annotation. Proteomics (2004) 2.76
Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. PLoS Biol (2009) 2.67
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis. Mol Cell Proteomics (2007) 2.40
Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol Cell Proteomics (2007) 2.39
Phosphoproteome analysis of Drosophila melanogaster embryos. J Proteome Res (2008) 2.33
DnaK as a thermometer: threonine-199 is site of autophosphorylation and is critical for ATPase activity. Proc Natl Acad Sci U S A (1991) 2.20
Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases. Sci Signal (2009) 2.16
Weak functional constraints on phosphoproteomes. Trends Genet (2009) 2.10
Characterization of the essential gene glmM encoding phosphoglucosamine mutase in Escherichia coli. J Biol Chem (1996) 1.97
A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics (2004) 1.78
Regulation of LiaRS-dependent gene expression in bacillus subtilis: identification of inhibitor proteins, regulator binding sites, and target genes of a conserved cell envelope stress-sensing two-component system. J Bacteriol (2006) 1.77
A eukaryotic-type Ser/Thr kinase in Enterococcus faecalis mediates antimicrobial resistance and intestinal persistence. Proc Natl Acad Sci U S A (2007) 1.55
Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors. Structure (2002) 1.49
Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes. Genome Biol (2008) 1.40
Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra. J Proteome Res (2007) 1.37
Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250. J Bacteriol (1997) 1.32
The catabolite control protein CcpA controls ammonium assimilation in Bacillus subtilis. J Mol Microbiol Biotechnol (1999) 1.31
The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins. Proteomics (2008) 1.18
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis. Proteomics (2007) 1.17
Analysis of the dynamic Bacillus subtilis Ser/Thr/Tyr phosphoproteome implicated in a wide variety of cellular processes. Proteomics (2006) 1.16
Phosphorylation of cytadherence-accessory proteins in Mycoplasma pneumoniae. J Bacteriol (1994) 1.14
Multiple-mutation reaction: a method for simultaneous introduction of multiple mutations into the glpK gene of Mycoplasma pneumoniae. Appl Environ Microbiol (2005) 1.14
Site-directed mutagenesis by combined chain reaction. Anal Biochem (1998) 1.13
Interactions of wild-type and truncated LevR of Bacillus subtilis with the upstream activating sequence of the levanase operon. J Mol Biol (1994) 1.12
Mycoplasma infections of the human respiratory tract. Wien Klin Wochenschr (1997) 1.11
Tools for the genetic analysis of Mycoplasma. Int J Med Microbiol (2007) 1.11
In vivo activity of enzymatic and regulatory components of the phosphoenolpyruvate:sugar phosphotransferase system in Mycoplasma pneumoniae. J Bacteriol (2004) 1.11
Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life. PLoS One (2009) 1.10
Towards a two-dimensional proteome map of Mycoplasma pneumoniae. Electrophoresis (2000) 1.08
CpgA, EF-Tu and the stressosome protein YezB are substrates of the Ser/Thr kinase/phosphatase couple, PrkC/PrpC, in Bacillus subtilis. Microbiology (2009) 1.06
Mycoplasma pneumoniae HPr kinase/phosphorylase. Eur J Biochem (2004) 1.02
Transcription in Mycoplasma pneumoniae: analysis of the promoters of the ackA and ldh genes. J Mol Biol (2007) 0.99
Regulatory protein phosphorylation in Mycoplasma pneumoniae. A PP2C-type phosphatase serves to dephosphorylate HPr(Ser-P). J Biol Chem (2006) 0.99
Regulation of carbon metabolism in the mollicutes and its relation to virulence. J Mol Microbiol Biotechnol (2007) 0.99
Autophosphorylation of phosphoglucosamine mutase from Escherichia coli. J Bacteriol (2000) 0.98
The stability of cytadherence proteins in Mycoplasma pneumoniae requires activity of the protein kinase PrkC. Infect Immun (2009) 0.96
Phosphoproteomics in bacteria: towards a systemic understanding of bacterial phosphorylation networks. Expert Rev Proteomics (2008) 0.93
Several enzymes of the central metabolism are phosphorylated in Staphylococcus aureus. FEMS Microbiol Lett (2007) 0.93
Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae. BMC Microbiol (2007) 0.92
A novel mode of control of Mycoplasma pneumoniae HPr kinase/phosphatase activity reflects its parasitic lifestyle. Microbiology (2002) 0.90
Phosphorylation of Mycoplasma pneumoniae cytadherence-accessory proteins in cell extracts. J Bacteriol (1995) 0.89
Crystal structure of HPr kinase/phosphatase from Mycoplasma pneumoniae. J Mol Biol (2003) 0.88
The cytoplasmic phosphoproteome of the Gram-negative bacterium Campylobacter jejuni: evidence for modification by unidentified protein kinases. Proteomics (2007) 0.87
Dual phosphorylation of Mycoplasma pneumoniae HPr by Enzyme I and HPr kinase suggests an extended phosphoryl group susceptibility of HPr. FEMS Microbiol Lett (2005) 0.86
Essential role of the hprK gene in Ralstonia eutropha H16. J Mol Microbiol Biotechnol (2009) 0.84
Autophosphorylation of the 16 kDa and 70 kDa antigens (Hsp 16.3 and Hsp 70) of Mycobacterium tuberculosis. Microbiology (2004) 0.79
Phosphorylation of Mycobacterium leprae heat-shock 70 protein at threonine 175 alters its substrate binding characteristics. Biochim Biophys Acta (1998) 0.77
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol (2008) 6.24
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science (2012) 4.41
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science (2012) 4.11
Guidelines for the next 10 years of proteomics. Proteomics (2006) 3.61
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila. Science (2007) 3.03
Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol Mol Biol Rev (2004) 2.67
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis. J Bacteriol (2002) 2.47
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science (2012) 2.38
Repair of global regulators in Staphylococcus aureus 8325 and comparative analysis with other clinical isolates. Infect Immun (2010) 2.33
Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Mol Cell Proteomics (2009) 2.08
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology (2004) 1.96
Anaerobic gene expression in Staphylococcus aureus. J Bacteriol (2007) 1.95
Role of the Fur regulon in iron transport in Bacillus subtilis. J Bacteriol (2006) 1.84
Proteomic approach to understanding antibiotic action. Antimicrob Agents Chemother (2003) 1.78
A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics (2004) 1.78
Influence of the two-component system SaeRS on global gene expression in two different Staphylococcus aureus strains. J Bacteriol (2006) 1.76
Global characterization of disulfide stress in Bacillus subtilis. J Bacteriol (2003) 1.75
Polysulfides link H2S to protein thiol oxidation. Antioxid Redox Signal (2013) 1.70
Physiological characterization of a heme-deficient mutant of Staphylococcus aureus by a proteomic approach. J Bacteriol (2003) 1.69
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways. Metab Eng (2003) 1.64
Molecular discrimination of responders and nonresponders to anti-TNF alpha therapy in rheumatoid arthritis by etanercept. Arthritis Res Ther (2008) 1.59
Two minimal Tat translocases in Bacillus. Mol Microbiol (2004) 1.58
An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PLoS One (2012) 1.57
Genome engineering reveals large dispensable regions in Bacillus subtilis. Mol Biol Evol (2003) 1.55
Host imprints on bacterial genomes--rapid, divergent evolution in individual patients. PLoS Pathog (2010) 1.54
Spx is a global effector impacting stress tolerance and biofilm formation in Staphylococcus aureus. J Bacteriol (2006) 1.52
Elevated type I interferon-like activity in a subset of multiple sclerosis patients: molecular basis and clinical relevance. J Neuroinflammation (2012) 1.52
The influence of agr and sigmaB in growth phase dependent regulation of virulence factors in Staphylococcus aureus. Proteomics (2004) 1.51
Redox sensing by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus. Mol Microbiol (2010) 1.49
Cyclic di-AMP homeostasis in bacillus subtilis: both lack and high level accumulation of the nucleotide are detrimental for cell growth. J Biol Chem (2012) 1.49
S-bacillithiolation protects against hypochlorite stress in Bacillus subtilis as revealed by transcriptomics and redox proteomics. Mol Cell Proteomics (2011) 1.48
Bacillus subtilis: from soil bacterium to super-secreting cell factory. Microb Cell Fact (2013) 1.46
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Mol Syst Biol (2012) 1.44
The sigmaB regulon in Staphylococcus aureus and its regulation. Int J Med Microbiol (2006) 1.43
Regulatory links between carbon and nitrogen metabolism. Curr Opin Microbiol (2006) 1.40
Characterization of riboflavin (vitamin B2) transport proteins from Bacillus subtilis and Corynebacterium glutamicum. J Bacteriol (2007) 1.39
Trigger enzymes: bifunctional proteins active in metabolism and in controlling gene expression. Mol Microbiol (2007) 1.37
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis. J Bacteriol (2005) 1.35
A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation. J Bacteriol (2009) 1.35
S-cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress. J Biol Chem (2007) 1.33
A tyrosine kinase and its activator control the activity of the CtsR heat shock repressor in B. subtilis. EMBO J (2005) 1.33
Expression of the glycolytic gapA operon in Bacillus subtilis: differential syntheses of proteins encoded by the operon. Microbiology (2003) 1.33
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases. Mol Microbiol (2012) 1.32
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics (2007) 1.32
Selective contribution of the twin-arginine translocation pathway to protein secretion in Bacillus subtilis. J Biol Chem (2002) 1.32
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol (2011) 1.31
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. Database (Oxford) (2009) 1.30
Control of the Bacillus subtilis antiterminator protein GlcT by phosphorylation. Elucidation of the phosphorylation chain leading to inactivation of GlcT. J Biol Chem (2003) 1.30
SPINE: a method for the rapid detection and analysis of protein-protein interactions in vivo. Proteomics (2007) 1.28
Nitric oxide stress induces different responses but mediates comparable protein thiol protection in Bacillus subtilis and Staphylococcus aureus. J Bacteriol (2008) 1.27
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome. PLoS One (2009) 1.27
Proteomics uncovers extreme heterogeneity in the Staphylococcus aureus exoproteome due to genomic plasticity and variant gene regulation. Proteomics (2010) 1.27
Glycerol metabolism is important for cytotoxicity of Mycoplasma pneumoniae. J Bacteriol (2008) 1.26
Proteomic characterization of the whole secretome of Legionella pneumophila and functional analysis of outer membrane vesicles. Infect Immun (2008) 1.24
Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes. J Bacteriol (2004) 1.24
Control of the glycolytic gapA operon by the catabolite control protein A in Bacillus subtilis: a novel mechanism of CcpA-mediated regulation. Mol Microbiol (2002) 1.24
SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis. Nucleic Acids Res (2011) 1.24
Structure-function analysis of PrsA reveals roles for the parvulin-like and flanking N- and C-terminal domains in protein folding and secretion in Bacillus subtilis. J Biol Chem (2004) 1.24
Insufficient expression of the ilv-leu operon encoding enzymes of branched-chain amino acid biosynthesis limits growth of a Bacillus subtilis ccpA mutant. J Bacteriol (2002) 1.23
Fluorescence thiol modification assay: oxidatively modified proteins in Bacillus subtilis. Mol Microbiol (2005) 1.23
A regulatory protein-protein interaction governs glutamate biosynthesis in Bacillus subtilis: the glutamate dehydrogenase RocG moonlights in controlling the transcription factor GltC. Mol Microbiol (2007) 1.22
Small cationic antimicrobial peptides delocalize peripheral membrane proteins. Proc Natl Acad Sci U S A (2014) 1.22
The RsbRST stress module in bacteria: a signalling system that may interact with different output modules. J Mol Microbiol Biotechnol (2005) 1.22
Proteomic analysis of antioxidant strategies of Staphylococcus aureus: diverse responses to different oxidants. Proteomics (2008) 1.21
The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA. Microbiology (2003) 1.21
Staphylococcus aureus carriers neutralize superantigens by antibodies specific for their colonizing strain: a potential explanation for their improved prognosis in severe sepsis. J Infect Dis (2006) 1.21
MurAA, catalysing the first committed step in peptidoglycan biosynthesis, is a target of Clp-dependent proteolysis in Bacillus subtilis. Mol Microbiol (2004) 1.20
Fine-tuning in regulation of Clp protein content in Bacillus subtilis. J Bacteriol (2004) 1.20
In-depth profiling of the LiaR response of Bacillus subtilis. J Bacteriol (2010) 1.20
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis. Nat Commun (2010) 1.19
Protein aggregation in Escherichia coli: role of proteases. FEMS Microbiol Lett (2002) 1.19
The extracellular proteome of Bacillus subtilis under secretion stress conditions. Mol Microbiol (2003) 1.18
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis. Proteomics (2007) 1.17
Carbon catabolite repression in Bacillus subtilis: quantitative analysis of repression exerted by different carbon sources. J Bacteriol (2008) 1.17
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis. Microbiology (2009) 1.17
Bacillus subtilis during feast and famine: visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis. Genome Res (2003) 1.17
SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information. Nucleic Acids Res (2013) 1.16
Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol-dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR-family regulator YraB (AdhR). Mol Microbiol (2008) 1.16
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution. PLoS Pathog (2012) 1.16
The general stress protein Ctc of Bacillus subtilis is a ribosomal protein. J Mol Microbiol Biotechnol (2002) 1.15
Expression of CD83 is regulated by HuR via a novel cis-active coding region RNA element. J Biol Chem (2006) 1.15
RNase Y in Bacillus subtilis: a Natively disordered protein that is the functional equivalent of RNase E from Escherichia coli. J Bacteriol (2011) 1.15
Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. Proc Natl Acad Sci U S A (2012) 1.14
Proteome analyses of Staphylococcus aureus in growing and non-growing cells: a physiological approach. Int J Med Microbiol (2005) 1.14