Published in Mol Ecol on February 08, 2010
Harnessing genomics for delineating conservation units. Trends Ecol Evol (2012) 1.67
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics (2011) 1.43
Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow. Philos Trans R Soc Lond B Biol Sci (2012) 1.35
Estimates of genetic differentiation measured by F(ST) do not necessarily require large sample sizes when using many SNP markers. PLoS One (2012) 1.32
Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature. Nature (2015) 1.14
Invasive cyprinid fish in Europe originate from the single introduction of an admixed source population followed by a complex pattern of spread. PLoS One (2011) 1.07
Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti is a genetically distinct population. PLoS Genet (2012) 1.00
Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies. ISME J (2015) 0.93
Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping. Mol Ecol (2013) 0.90
Can diversifying selection be distinguished from history in geographic clines? A population genomic study of killifish (Fundulus heteroclitus). PLoS One (2012) 0.87
Gene duplication and divergence of long wavelength-sensitive opsin genes in the guppy, Poecilia reticulata. J Mol Evol (2010) 0.84
Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome. BMC Genomics (2012) 0.84
Reintroductions and genetic introgression from domestic pigs have shaped the genetic population structure of Northwest European wild boar. BMC Genet (2013) 0.83
Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome. BMC Genomics (2013) 0.82
Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata. BMC Genomics (2014) 0.82
Pigment pattern formation in the guppy, Poecilia reticulata, involves the Kita and Csf1ra receptor tyrosine kinases. Genetics (2013) 0.82
Nuclear and mitochondrial genetic structure in the Eurasian beaver (Castor fiber) - implications for future reintroductions. Evol Appl (2014) 0.82
Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes. Evol Appl (2014) 0.81
Applications in the search for genomic selection signatures in fish. Front Genet (2015) 0.81
Are host-parasite interactions influenced by adaptation to predators? A test with guppies and Gyrodactylus in experimental stream channels. Oecologia (2012) 0.80
Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago. Heredity (Edinb) (2014) 0.80
Reasons for the invasive success of a guppy (Poecilia reticulata) population in Trinidad. PLoS One (2012) 0.80
Inference of selection based on temporal genetic differentiation in the study of highly polymorphic multigene families. PLoS One (2012) 0.79
Genetic-geographic correlation revealed across a broad European ecotypic sample of perennial ryegrass (Lolium perenne) using array-based SNP genotyping. Theor Appl Genet (2015) 0.79
Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Mol Ecol (2016) 0.78
Gene flow from an adaptively divergent source causes rescue through genetic and demographic factors in two wild populations of Trinidadian guppies. Evol Appl (2016) 0.77
Genetic analysis of population differentiation and adaptation in Leuciscus waleckii. Genetica (2013) 0.76
Evidence for cryptic speciation in directly transmitted gyrodactylid parasites of Trinidadian guppies. PLoS One (2015) 0.76
Population structure of guppies in north-eastern Venezuela, the area of putative incipient speciation. BMC Evol Biol (2014) 0.76
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
A gene expression map of Arabidopsis thaliana development. Nat Genet (2005) 17.39
Control of leaf morphogenesis by microRNAs. Nature (2003) 11.36
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature (2010) 10.66
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (2007) 9.85
Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet (2007) 9.48
Specific effects of microRNAs on the plant transcriptome. Dev Cell (2005) 8.48
Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res (2008) 8.44
Criteria for annotation of plant MicroRNAs. Plant Cell (2008) 7.49
Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell (2006) 7.06
Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet (2011) 6.59
Integration of spatial and temporal information during floral induction in Arabidopsis. Science (2005) 6.24
Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res (2003) 6.04
Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet (2007) 5.69
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell (2009) 5.52
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science (2010) 5.19
The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet (2002) 4.96
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell (2009) 4.95
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A (2009) 4.65
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol (2007) 4.30
SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods (2009) 4.01
Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell (2007) 3.84
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature (2011) 3.66
Dissection of floral induction pathways using global expression analysis. Development (2003) 3.43
Next-generation genetics in plants. Nature (2008) 3.27
Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol (2013) 3.20
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell (2005) 3.12
The scale of population structure in Arabidopsis thaliana. PLoS Genet (2010) 3.12
A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science (2014) 3.11
The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet (2006) 3.11
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol (2008) 3.09
Transcriptional control of gene expression by microRNAs. Cell (2010) 3.05
Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J (2008) 3.03
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature (2008) 3.00
A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat Genet (2003) 2.95
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell (2007) 2.90
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell (2008) 2.87
Move on up, it's time for change--mobile signals controlling photoperiod-dependent flowering. Genes Dev (2007) 2.82
Simultaneous alignment of short reads against multiple genomes. Genome Biol (2009) 2.79
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genet (2005) 2.74
Launching eLife, Part 1. Elife (2012) 2.72
Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genet (2006) 2.69
Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc Natl Acad Sci U S A (2011) 2.67
Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nat Rev Genet (2007) 2.55
Identifying Canadian freshwater fishes through DNA barcodes. PLoS One (2008) 2.49
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A (2005) 2.47
Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua). Proc Biol Sci (2003) 2.42
Selective epigenetic control of retrotransposition in Arabidopsis. Nature (2009) 2.41
Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature (2010) 2.34
FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics (2005) 2.32
Building beauty: the genetic control of floral patterning. Dev Cell (2002) 2.30
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.29
A divergent external loop confers antagonistic activity on floral regulators FT and TFL1. EMBO J (2006) 2.29
The role of JAGGED in shaping lateral organs. Development (2004) 2.22
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell (2010) 2.22
Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics (2002) 2.22
Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell (2011) 2.17
Launching eLife, Part 2. Elife (2012) 2.04
Deep sequencing to reveal new variants in pooled DNA samples. Hum Mutat (2009) 2.04
A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet (2010) 2.01
Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history. Proc Biol Sci (2008) 1.99
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development (2010) 1.93
Stem cells that make stems. Nature (2002) 1.87
Highly specific gene silencing by artificial miRNAs in rice. PLoS One (2008) 1.85
The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. Elife (2013) 1.84
Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing. Plant Cell (2003) 1.83
Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Res (2008) 1.82
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci U S A (2011) 1.82
Modes of intercellular transcription factor movement in the Arabidopsis apex. Development (2003) 1.80
Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Curr Biol (2005) 1.80
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J (2009) 1.75
Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. Plant J (2009) 1.74
MSQT for choosing SNP assays from multiple DNA alignments. Bioinformatics (2007) 1.71
The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet (2013) 1.69
miRNA control of vegetative phase change in trees. PLoS Genet (2011) 1.67
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci U S A (2013) 1.63
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol (2008) 1.62
The evolution of selfing in Arabidopsis thaliana. Science (2007) 1.62
Sex chromosomes and sexual selection in poeciliid fishes. Am Nat (2002) 1.61
Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci U S A (2012) 1.59
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc Natl Acad Sci U S A (2009) 1.57
Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics (2004) 1.55
The relative influence of natural selection and geography on gene flow in guppies. Mol Ecol (2006) 1.52
The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science (2005) 1.52
Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiol (2007) 1.52
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. BMC Biol (2011) 1.51
MicroRNA networks and developmental plasticity in plants. Trends Plant Sci (2011) 1.50
Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA (2008) 1.50
Fast-forward genetics enabled by new sequencing technologies. Trends Plant Sci (2011) 1.48
Beyond lifetime reproductive success: the posthumous reproductive dynamics of male Trinidadian guppies. Proc Biol Sci (2013) 1.48
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol (2010) 1.46
Regulation and functional specialization of small RNA-target nodes during plant development. Curr Opin Plant Biol (2009) 1.45
Increased leaf size: different means to an end. Plant Physiol (2010) 1.45
Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genet (2010) 1.45
Female preference for conspecific males based on olfactory cues in a Lake Malawi cichlid fish. Biol Lett (2005) 1.45
Structure determinants for accurate processing of miR172a in Arabidopsis thaliana. Curr Biol (2010) 1.43
Balancing selection, random genetic drift, and genetic variation at the major histocompatibility complex in two wild populations of guppies (Poecilia reticulata). Evolution (2006) 1.42
Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Rep (2009) 1.42