Published in J Ocul Biol Dis Infor on December 12, 2009
The membrane proteome of the mouse lens fiber cell. Mol Vis (2009) 1.30
A face in the crowd: recognizing peptides through database search. Mol Cell Proteomics (2011) 1.07
Distinct energy metabolism of auditory and vestibular sensory epithelia revealed by quantitative mass spectrometry using MS2 intensity. Proc Natl Acad Sci U S A (2012) 1.05
Accurate label-free protein quantitation with high- and low-resolution mass spectrometers. J Proteome Res (2013) 1.00
Na+/K+-ATPase α1 identified as an abundant protein in the blood-labyrinth barrier that plays an essential role in the barrier integrity. PLoS One (2011) 0.99
Comparative profiling of highly enriched 22L and Chandler mouse scrapie prion protein preparations. Proteomics (2010) 0.99
Recombinant filaggrin is internalized and processed to correct filaggrin deficiency. J Invest Dermatol (2013) 0.90
Monoubiquitination is critical for ovarian tumor domain-containing ubiquitin aldehyde binding protein 1 (Otub1) to suppress UbcH5 enzyme and stabilize p53 protein. J Biol Chem (2014) 0.89
Correlation of actin crosslinker and capper expression levels with stereocilia growth phases. Mol Cell Proteomics (2013) 0.87
Verification and spatial localization of aquaporin-5 in the ocular lens. Exp Eye Res (2013) 0.86
Analysis of HIV-1 Gag protein interactions via biotin ligase tagging. J Virol (2015) 0.86
Identification of a Third Mn(II) Oxidase Enzyme in Pseudomonas putida GB-1. Appl Environ Microbiol (2016) 0.83
Glutaredoxin 2 (Grx2) gene deletion induces early onset of age-dependent cataracts in mice. J Biol Chem (2014) 0.83
Identification of cisplatin-binding proteins using agarose conjugates of platinum compounds. PLoS One (2013) 0.83
Is protein methylation in the human lens a result of non-enzymatic methylation by S-adenosylmethionine? Exp Eye Res (2012) 0.81
A systems approach implicates nuclear receptor targeting in the Atp7b(-/-) mouse model of Wilson's disease. Metallomics (2012) 0.81
Improving peptide identification sensitivity in shotgun proteomics by stratification of search space. J Proteome Res (2013) 0.80
Interaction of Mycobacterium leprae with human airway epithelial cells: adherence, entry, survival, and identification of potential adhesins by surface proteome analysis. Infect Immun (2013) 0.80
The Drosophila Helicase Maleless (MLE) is Implicated in Functions Distinct From its Role in Dosage Compensation. Mol Cell Proteomics (2015) 0.79
Comparative proteomic analysis identifies age-dependent increases in the abundance of specific proteins after deletion of the small heat shock proteins αA- and αB-crystallin. Biochemistry (2013) 0.79
Shotgun proteomic analysis of S-thiolation sites of guinea pig lens nuclear crystallins following oxidative stress in vivo. Mol Vis (2013) 0.79
Carbamoylation correlates of cyanate neuropathy and cyanide poisoning: relevance to the biomarkers of cassava cyanogenesis and motor system toxicity. Springerplus (2013) 0.78
Proteomic Analysis of the Bovine and Human Ciliary Zonule. Invest Ophthalmol Vis Sci (2017) 0.77
Dissection of the human multipotent adult progenitor cell secretome by proteomic analysis. Stem Cells Transl Med (2013) 0.77
Hair-bundle proteomes of avian and mammalian inner-ear utricles. Sci Data (2015) 0.77
A Protein Complex Map of Trypanosoma brucei. PLoS Negl Trop Dis (2016) 0.77
Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function. Sci Rep (2016) 0.75
Solution-Phase Crosstalk and Regulatory Interactions Between Multipotent Adult Progenitor Cells and Peripheral Blood Mononuclear Cells. Stem Cells Transl Med (2015) 0.75
TRAIL-Based High Throughput Screening Reveals a Link between TRAIL-Mediated Apoptosis and Glutathione Reductase, a Key Component of Oxidative Stress Response. PLoS One (2015) 0.75
Role for Rab10 in Methamphetamine-Induced Behavior. PLoS One (2015) 0.75
Bioinformatics and the eye. J Ocul Biol Dis Infor (2010) 0.75
Natural Killer Cell Evasion Is Essential for Infection by Rhesus Cytomegalovirus. PLoS Pathog (2016) 0.75
Newborn mouse lens proteome and its alteration by lysine 6 mutant ubiquitin. J Proteome Res (2014) 0.75
Plastin 1 widens stereocilia by transforming actin filament packing from hexagonal to liquid. J Cell Biol (2016) 0.75
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom (1994) 45.51
Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis (1999) 45.01
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem (2002) 35.30
Mass spectrometry-based proteomics. Nature (2003) 28.94
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods (2007) 25.29
A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem (2004) 19.20
The International Protein Index: an integrated database for proteomics experiments. Proteomics (2004) 14.67
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res (2003) 12.31
Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat Methods (2007) 8.94
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics (2009) 8.87
Interpretation of shotgun proteomic data: the protein inference problem. Mol Cell Proteomics (2005) 6.28
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Commun Mass Spectrom (2004) 4.76
Ageing and vision: structure, stability and function of lens crystallins. Prog Biophys Mol Biol (2004) 4.26
IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering. J Proteome Res (2009) 3.72
Age-related nuclear cataract-oxidation is the key. Exp Eye Res (2005) 3.61
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis. Proteomics (2005) 3.51
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry. Mol Cell Proteomics (2009) 2.96
The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. J Proteome Res (2007) 2.77
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Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility? J Proteome Res (2006) 2.17
Age-related changes in human lens crystallins identified by two-dimensional electrophoresis and mass spectrometry. Exp Eye Res (1998) 1.88
Sequence analysis of betaA3, betaB3, and betaA4 crystallins completes the identification of the major proteins in young human lens. J Biol Chem (1997) 1.84
The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data. Bioinformatics (2008) 1.81
Lens proteomics: the accumulation of crystallin modifications in the mouse lens with age. Invest Ophthalmol Vis Sci (2002) 1.55
Post-translational modifications in the nuclear region of young, aged, and cataract human lenses. J Proteome Res (2007) 1.52
gammaN-crystallin and the evolution of the betagamma-crystallin superfamily in vertebrates. FEBS J (2005) 1.19
Human beta-crystallins modified by backbone cleavage, deamidation and oxidation are prone to associate. Exp Eye Res (2003) 1.17
Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics. J Proteome Res (2008) 1.17
Deamidation in human gamma S-crystallin from cataractous lenses is influenced by surface exposure. Biochemistry (2002) 1.16
Lens proteomics: analysis of rat crystallin sequences and two-dimensional electrophoresis map. Invest Ophthalmol Vis Sci (2002) 1.15
Trade-off between high sensitivity and increased potential for false positive peptide sequence matches using a two-dimensional linear ion trap for tandem mass spectrometry-based proteomics. J Proteome Res (2006) 1.10
Measurement of deamidation of intact proteins by isotopic envelope and mass defect with ion cyclotron resonance Fourier transform mass spectrometry. Rapid Commun Mass Spectrom (2006) 1.03
Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses. J Proteome Res (2007) 1.02
Eye lens proteomics. Amino Acids (2006) 1.01
Proteomic and sequence analysis of chicken lens crystallins reveals alternate splicing and translational forms of beta B2 and beta A2 crystallins. Invest Ophthalmol Vis Sci (2004) 0.90
Susceptibility of ovine lens crystallins to proteolytic cleavage during formation of hereditary cataract. Invest Ophthalmol Vis Sci (2008) 0.87
Expressed sequence tag analysis of guinea pig (Cavia porcellus) eye tissues for NEIBank. Mol Vis (2008) 0.84
Proteome analysis of human foetal, aged and advanced nuclear cataract lenses. Proteomics Clin Appl (2008) 0.84
Human and monkey lenses cultured with calcium ionophore form alphaB-crystallin lacking the C-terminal lysine, a prominent feature of some human cataracts. Invest Ophthalmol Vis Sci (2009) 0.82
Aldosterone mediates activation of the thiazide-sensitive Na-Cl cotransporter through an SGK1 and WNK4 signaling pathway. J Clin Invest (2009) 1.59
Lens proteomics: the accumulation of crystallin modifications in the mouse lens with age. Invest Ophthalmol Vis Sci (2002) 1.55
Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm. J Proteome Res (2005) 1.54
The R109H variant of fascin-2, a developmentally regulated actin crosslinker in hair-cell stereocilia, underlies early-onset hearing loss of DBA/2J mice. J Neurosci (2010) 1.54
Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61, TRAP, and two potential new subunits. Biochemistry (2005) 1.51
Molecular architecture of the chick vestibular hair bundle. Nat Neurosci (2013) 1.43
High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results. Anal Chem (2004) 1.42
Two-dimensional liquid chromatography study of the human whole saliva proteome. J Proteome Res (2004) 1.35
On the biomarkers and mechanisms of konzo, a distinct upper motor neuron disease associated with food (cassava) cyanogenic exposure. Food Chem Toxicol (2010) 1.34
Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res (2007) 1.30
The membrane proteome of the mouse lens fiber cell. Mol Vis (2009) 1.30
Deamidation, but not truncation, decreases the urea stability of a lens structural protein, betaB1-crystallin. Biochemistry (2002) 1.25
Lens proteomics: analysis of rat crystallin sequences and two-dimensional electrophoresis map. Invest Ophthalmol Vis Sci (2002) 1.15
Decreased heat stability and increased chaperone requirement of modified human betaB1-crystallins. Mol Vis (2002) 1.14
Ectopic Pax6 expression disturbs lens fiber cell differentiation. Invest Ophthalmol Vis Sci (2004) 1.08
Distinct energy metabolism of auditory and vestibular sensory epithelia revealed by quantitative mass spectrometry using MS2 intensity. Proc Natl Acad Sci U S A (2012) 1.05
Methionine sulfoxide reductase A (MsrA) restores alpha-crystallin chaperone activity lost upon methionine oxidation. Biochim Biophys Acta (2009) 1.05
Role of Hsp90 in biogenesis of the beta-cell ATP-sensitive potassium channel complex. Mol Biol Cell (2010) 1.03
Proteomic profiling of human retinal and choroidal endothelial cells reveals molecular heterogeneity related to tissue of origin. Mol Vis (2007) 1.02
Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses. J Proteome Res (2007) 1.02
Laser light-scattering evidence for an altered association of beta B1-crystallin deamidated in the connecting peptide. Protein Sci (2004) 1.02
Mass measurements of C-terminally truncated alpha-crystallins from two-dimensional gels identify Lp82 as a major endopeptidase in rat lens. Mol Cell Proteomics (2002) 1.00
Calpain-specific proteolysis in primate retina: Contribution of calpains in cell death. Invest Ophthalmol Vis Sci (2006) 0.99
Na+/K+-ATPase α1 identified as an abundant protein in the blood-labyrinth barrier that plays an essential role in the barrier integrity. PLoS One (2011) 0.99
Role of the retinal vascular endothelial cell in ocular disease. Prog Retin Eye Res (2012) 0.99
The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes Dev (2010) 0.98
Biophysical properties of gammaC-crystallin in human and mouse eye lens: the role of molecular dipoles. J Mol Biol (2007) 0.98
Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets. J Am Chem Soc (2014) 0.97
HIF1α protein stability is increased by acetylation at lysine 709. J Biol Chem (2012) 0.96
Stable liquid glucagon formulations for rescue treatment and bi-hormonal closed-loop pancreas. Curr Diab Rep (2012) 0.95
Quantification of isotopically overlapping deamidated and 18o-labeled peptides using isotopic envelope mixture modeling. J Proteome Res (2009) 0.94
Mechanisms of glucagon degradation at alkaline pH. Peptides (2013) 0.93
Proteome analysis of lens epithelia, fibers, and the HLE B-3 cell line. Invest Ophthalmol Vis Sci (2003) 0.92
The PAK system links Rho GTPase signaling to thrombin-mediated platelet activation. Am J Physiol Cell Physiol (2013) 0.92
Role of Hsc70 binding cycle in CFTR folding and endoplasmic reticulum-associated degradation. Mol Biol Cell (2011) 0.91
Proteomic and sequence analysis of chicken lens crystallins reveals alternate splicing and translational forms of beta B2 and beta A2 crystallins. Invest Ophthalmol Vis Sci (2004) 0.90
Monoubiquitination is critical for ovarian tumor domain-containing ubiquitin aldehyde binding protein 1 (Otub1) to suppress UbcH5 enzyme and stabilize p53 protein. J Biol Chem (2014) 0.89
Calreticulin binds to gentamicin and reduces drug-induced ototoxicity. Toxicol Sci (2011) 0.88
Protein database and quantitative analysis considerations when integrating genetics and proteomics to compare mouse strains. J Proteome Res (2011) 0.88
Correlation of actin crosslinker and capper expression levels with stereocilia growth phases. Mol Cell Proteomics (2013) 0.87
Susceptibility of ovine lens crystallins to proteolytic cleavage during formation of hereditary cataract. Invest Ophthalmol Vis Sci (2008) 0.87
Verification and spatial localization of aquaporin-5 in the ocular lens. Exp Eye Res (2013) 0.86
Proteomics and phosphoproteomics analysis of human lens fiber cell membranes. Invest Ophthalmol Vis Sci (2013) 0.85
Altered patterns of phosphorylation in cultured mouse lenses during development of buthionine sulfoximine cataracts. Exp Eye Res (2002) 0.85
General utility of the chicken betaB1-crystallin promoter to drive protein expression in lens fiber cells of transgenic mice. Transgenic Res (2002) 0.84
Expressed sequence tag analysis of guinea pig (Cavia porcellus) eye tissues for NEIBank. Mol Vis (2008) 0.84
Human and monkey lenses cultured with calcium ionophore form alphaB-crystallin lacking the C-terminal lysine, a prominent feature of some human cataracts. Invest Ophthalmol Vis Sci (2009) 0.82
Changes in solvent accessibility of wild-type and deamidated βB2-crystallin following complex formation with αA-crystallin. Exp Eye Res (2012) 0.81
Is protein methylation in the human lens a result of non-enzymatic methylation by S-adenosylmethionine? Exp Eye Res (2012) 0.81
A systems approach implicates nuclear receptor targeting in the Atp7b(-/-) mouse model of Wilson's disease. Metallomics (2012) 0.81
Biochemical stabilization of glucagon at alkaline pH. Diabetes Technol Ther (2014) 0.80
Solvent accessibility of betaB2-crystallin and local structural changes due to deamidation at the dimer interface. Exp Eye Res (2010) 0.80
Fibrinogen Hershey IV: a novel dysfibrinogen with a gammaV411I mutation in the integrin alpha(IIb)beta(3) binding site. Thromb Haemost (2008) 0.79
Proteomic analysis of biopsied human colonic mucosa. J Pediatr Gastroenterol Nutr (2010) 0.79
Shotgun proteomic analysis of S-thiolation sites of guinea pig lens nuclear crystallins following oxidative stress in vivo. Mol Vis (2013) 0.79
Sequence and peptide map of guinea pig aquaporin 0. Mol Vis (2004) 0.79
Dissection of the human multipotent adult progenitor cell secretome by proteomic analysis. Stem Cells Transl Med (2013) 0.77
Newborn mouse lens proteome and its alteration by lysine 6 mutant ubiquitin. J Proteome Res (2014) 0.75