Tomoyoshi Soga

Author PubWeight™ 125.05‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom 2010 6.16
2 Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 2007 5.87
3 Quantitative metabolome profiling of colon and stomach cancer microenvironment by capillary electrophoresis time-of-flight mass spectrometry. Cancer Res 2009 3.50
4 Renal cyst formation in Fh1-deficient mice is independent of the Hif/Phd pathway: roles for fumarate in KEAP1 succination and Nrf2 signaling. Cancer Cell 2011 3.00
5 Regulation of glycolysis by Pdk functions as a metabolic checkpoint for cell cycle quiescence in hematopoietic stem cells. Cell Stem Cell 2013 2.58
6 Mitochondrial dysfunction associated with increased oxidative stress and α-synuclein accumulation in PARK2 iPSC-derived neurons and postmortem brain tissue. Mol Brain 2012 2.18
7 Autophagy protects the proximal tubule from degeneration and acute ischemic injury. J Am Soc Nephrol 2011 2.04
8 Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics 2009 2.03
9 Oncometabolites: linking altered metabolism with cancer. J Clin Invest 2013 1.78
10 SLCO4C1 transporter eliminates uremic toxins and attenuates hypertension and renal inflammation. J Am Soc Nephrol 2009 1.70
11 MathDAMP: a package for differential analysis of metabolite profiles. BMC Bioinformatics 2006 1.68
12 Analysis of liver metabolism in a rat model of heart failure. Int J Cardiol 2011 1.68
13 Visualization of three-way comparisons of omics data. BMC Bioinformatics 2007 1.66
14 Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. Plant J 2004 1.63
15 Measurement of internal body time by blood metabolomics. Proc Natl Acad Sci U S A 2009 1.56
16 Metabolome analysis by capillary electrophoresis-mass spectrometry. J Chromatogr A 2007 1.53
17 Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism. Mol Syst Biol 2009 1.52
18 A systematic survey of in vivo obligate chaperonin-dependent substrates. EMBO J 2010 1.41
19 Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS. Mol Biosyst 2007 1.41
20 Human blood metabolite timetable indicates internal body time. Proc Natl Acad Sci U S A 2012 1.37
21 Analysis of metabolic remodeling in compensated left ventricular hypertrophy and heart failure. Circ Heart Fail 2010 1.35
22 Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis. Curr Bioinform 2012 1.31
23 Cystathionine beta-synthase as a carbon monoxide-sensitive regulator of bile excretion. Hepatology 2009 1.29
24 mTORC1 is essential for leukemia propagation but not stem cell self-renewal. J Clin Invest 2012 1.27
25 Metabolomic profiling of uremic solutes in CKD patients. Hypertens Res 2010 1.26
26 Metabolomic anatomy of an animal model revealing homeostatic imbalances in dyslipidaemia. Mol Biosyst 2011 1.24
27 Roles of hemoglobin Allostery in hypoxia-induced metabolic alterations in erythrocytes: simulation and its verification by metabolome analysis. J Biol Chem 2007 1.24
28 Metabolomic profiling of lung and prostate tumor tissues by capillary electrophoresis time-of-flight mass spectrometry. Metabolomics 2012 1.17
29 Metabolomics approach for enzyme discovery. J Proteome Res 2006 1.16
30 Hepatitis C virus infection promotes hepatic gluconeogenesis through an NS5A-mediated, FoxO1-dependent pathway. J Virol 2011 1.09
31 Inhibition of mitochondrial aconitase by succination in fumarate hydratase deficiency. Cell Rep 2013 1.08
32 The emerging role of fumarate as an oncometabolite. Front Oncol 2012 1.08
33 13C-metabolic flux analysis for batch culture of Escherichia coli and its Pyk and Pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites. Biotechnol Prog 2010 1.06
34 Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks. J Proteome Res 2006 1.03
35 Quantitative metabolome analysis profiles activation of glutaminolysis in glioma with IDH1 mutation. Tumour Biol 2014 1.02
36 Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli. J Biol Chem 2009 1.00
37 A role for cytosolic fumarate hydratase in urea cycle metabolism and renal neoplasia. Cell Rep 2013 0.99
38 HIF-1alpha is necessary to support gluconeogenesis during liver regeneration. Biochem Biophys Res Commun 2009 0.98
39 Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst Biol 2008 0.97
40 Evaluation of metabolic alteration in transgenic rice overexpressing dihydroflavonol-4-reductase. Ann Bot 2006 0.97
41 Self-enhancement of hepatitis C virus replication by promotion of specific sphingolipid biosynthesis. PLoS Pathog 2012 0.96
42 In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods. J Biotechnol 2009 0.96
43 Gene knockout and metabolome analysis of carnitine/organic cation transporter OCTN1. Pharm Res 2010 0.95
44 Global metabolomic analysis of heart tissue in a hamster model for dilated cardiomyopathy. J Mol Cell Cardiol 2013 0.95
45 Metabolic profiling reveals new serum biomarkers for differentiating diabetic nephropathy. Anal Bioanal Chem 2012 0.94
46 Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus. J Biol Chem 2009 0.94
47 Two atypical L-cysteine-regulated NADPH-dependent oxidoreductases involved in redox maintenance, L-cystine and iron reduction, and metronidazole activation in the enteric protozoan Entamoeba histolytica. J Biol Chem 2010 0.92
48 Capillary electrophoresis-mass spectrometry-based metabolome analysis of serum and saliva from neurodegenerative dementia patients. Electrophoresis 2013 0.91
49 L-Carnitine prevents the development of ventricular fibrosis and heart failure with preserved ejection fraction in hypertensive heart disease. J Hypertens 2012 0.90
50 Metabolic and morphological changes of an oil accumulating trebouxiophycean alga in nitrogen-deficient conditions. Metabolomics 2012 0.89
51 Inhibition of ATP citrate lyase induces triglyceride accumulation with altered fatty acid composition in cancer cells. Int J Cancer 2013 0.88
52 Autophagy protects kidney proximal tubule epithelial cells from mitochondrial metabolic stress. Autophagy 2013 0.88
53 Concise review: genetic dissection of hypoxia signaling pathways in normal and leukemic stem cells. Stem Cells 2014 0.88
54 Dynamic simulation and metabolome analysis of long-term erythrocyte storage in adenine-guanosine solution. PLoS One 2013 0.88
55 Disruption of HIF-1α in hepatocytes impairs glucose metabolism in diet-induced obesity mice. Biochem Biophys Res Commun 2011 0.88
56 Metabolic profiling of the protozoan parasite Entamoeba invadens revealed activation of unpredicted pathway during encystation. PLoS One 2012 0.88
57 Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis. J Chromatogr A 2007 0.87
58 Hypotaurine is an Energy-Saving Hepatoprotective Compound against Ischemia-Reperfusion Injury of the Rat Liver. J Clin Biochem Nutr 2010 0.87
59 Inhibition of ATP citrate lyase induces an anticancer effect via reactive oxygen species: AMPK as a predictive biomarker for therapeutic impact. Am J Pathol 2013 0.86
60 Dramatic increase in glycerol biosynthesis upon oxidative stress in the anaerobic protozoan parasite Entamoeba histolytica. PLoS Negl Trop Dis 2012 0.86
61 Prediction of metabolite identity from accurate mass, migration time prediction and isotopic pattern information in CE-TOFMS data. Electrophoresis 2010 0.86
62 Unveiling cellular biochemical reactions via metabolomics-driven approaches. Curr Opin Microbiol 2010 0.86
63 Development of bottom-fermenting saccharomyces strains that produce high SO2 levels, using integrated metabolome and transcriptome analysis. Appl Environ Microbiol 2008 0.86
64 MMMDB: Mouse Multiple Tissue Metabolome Database. Nucleic Acids Res 2011 0.86
65 Rescue of anaemia and autoimmune responses in SOD1-deficient mice by transgenic expression of human SOD1 in erythrocytes. Biochem J 2009 0.85
66 Metabolome analysis revealed increase in S-methylcysteine and phosphatidylisopropanolamine synthesis upon L-cysteine deprivation in the anaerobic protozoan parasite Entamoeba histolytica. J Biol Chem 2010 0.85
67 The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin patterns. Mol Syst Biol 2013 0.85
68 Large-scale prediction of cationic metabolite identity and migration time in capillary electrophoresis mass spectrometry using artificial neural networks. Anal Chem 2005 0.85
69 Acetaminophen-induced hepatotoxicity in a liver tissue model consisting of primary hepatocytes assembling around an endothelial cell network. Drug Metab Dispos 2011 0.85
70 Persistent overexpression of phosphoglycerate mutase, a glycolytic enzyme, modifies energy metabolism and reduces stress resistance of heart in mice. PLoS One 2013 0.84
71 Model-based definition of population heterogeneity and its effects on metabolism in sporulating Bacillus subtilis. J Biochem 2007 0.84
72 Transcriptional regulation of organic anion transporting polypeptide SLCO4C1 as a new therapeutic modality to prevent chronic kidney disease. J Pharm Sci 2011 0.83
73 Functional expression of carnitine/organic cation transporter OCTN1/SLC22A4 in mouse small intestine and liver. Drug Metab Dispos 2010 0.83
74 Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay. Metabolomics 2012 0.83
75 Correlation between sensory evaluation scores of Japanese sake and metabolome profiles. J Agric Food Chem 2010 0.82
76 Glycogen is the primary source of glucose during the lag phase of E. coli proliferation. Biochim Biophys Acta 2012 0.82
77 Sheathless capillary electrophoresis-mass spectrometry with a high-sensitivity porous sprayer for cationic metabolome analysis. Analyst 2012 0.82
78 Metabolic profiling to identify potential serum biomarkers for gastric ulceration induced by nonsteroid anti-inflammatory drugs. J Proteome Res 2013 0.82
79 Dynamics of serum metabolites in patients with chronic hepatitis C receiving pegylated interferon plus ribavirin: a metabolomics analysis. Metabolism 2013 0.81
80 Sex-dependent hepatic transcripts and metabolites in the development of glucose intolerance and insulin resistance in Zucker diabetic fatty rats. J Mol Endocrinol 2011 0.81
81 Application of capillary electrophoresis-mass spectrometry to synthetic in vitro glycolysis studies. Electrophoresis 2004 0.81
82 Changes of metabolic profiles in an oral squamous cell carcinoma cell line induced by eugenol. In Vivo 2013 0.80
83 A metabolomic approach to clarifying the effect of AST-120 on 5/6 nephrectomized rats by capillary electrophoresis with mass spectrometry (CE-MS). Toxins (Basel) 2012 0.80
84 Metabolomic profiling rationalized pyruvate efficacy in cybrid cells harboring MELAS mitochondrial DNA mutations. Mitochondrion 2012 0.80
85 Differences in the fatty acid metabolism of visceral adipose tissue in postmenopausal women. Menopause 2014 0.80
86 Metabolomic profiling of the autosomal dominant polycystic kidney disease rat model. Clin Exp Nephrol 2011 0.80
87 Time-resolved metabolomics of a novel trebouxiophycean alga using (13)CO2 feeding. J Biosci Bioeng 2013 0.79
88 Metabolomic profiling of the response of susceptible and resistant soybean strains to foxglove aphid, Aulacorthum solani Kaltenbach. J Chromatogr B Analyt Technol Biomed Life Sci 2013 0.79
89 Metabolomic profiling analysis reveals chamber-dependent metabolite patterns in the mouse heart. Am J Physiol Heart Circ Physiol 2013 0.79
90 Cytotoxic effect of amide derivatives of trifluoromethionine against the enteric protozoan parasite Entamoeba histolytica. Int J Antimicrob Agents 2009 0.79
91 Positive autoregulation delays the expression phase of mammalian clock gene Per2. PLoS One 2011 0.79
92 Metabolomic identification of the target of the filopodia protrusion inhibitor glucopiericidin A. Chem Biol 2010 0.79
93 A yeast metabolite extraction protocol optimised for time-series analyses. PLoS One 2012 0.79
94 Amino acid analysis by capillary electrophoresis-mass spectrometry. Methods Mol Biol 2012 0.78
95 Changes in the charged metabolite and sugar profiles of pasteurized and unpasteurized Japanese sake with storage. J Agric Food Chem 2012 0.78
96 Metabolomic profiles and sensory attributes of edamame under various storage duration and temperature conditions. J Agric Food Chem 2010 0.78
97 In vivo role of aldehyde reductase. Biochim Biophys Acta 2012 0.77
98 The dynamics of cellular energetics during continuous yeast culture. Conf Proc IEEE Eng Med Biol Soc 2013 0.77
99 GTP-dependent RNA 3'-terminal phosphate cyclase from the hyperthermophilic archaeon Pyrococcus furiosus. Genes Cells 2011 0.77
100 A novel mechanism regulates H(2) S and SO(2) production in Saccharomyces cerevisiae. Yeast 2010 0.77
101 A medium-chain fatty acid as an alternative energy source in mouse preimplantation development. Sci Rep 2012 0.77
102 Capillary electrophoresis-mass spectrometry. Methods Mol Biol 2015 0.76
103 Biochemical and functional characterization of novel NADH kinase in the enteric protozoan parasite Entamoeba histolytica. Biochimie 2012 0.76
104 Abundant nucleostemin expression supports the undifferentiated properties of germ cell tumors. Am J Pathol 2013 0.76
105 Mono-(2-ethylhexyl) phthalate targets glycogen debranching enzyme and affects glycogen metabolism in rat testis. Toxicol Sci 2009 0.75
106 Correction: Mitochondrial Dysfunction Plus High-Sugar Diet Provokes a Metabolic Crisis That Inhibits Growth. PLoS One 2016 0.75
107 Polymer entrapment in polymerized silicate for preparing highly stable capillary coatings for CE and CE-MS. Anal Chem 2007 0.75
108 Microelectrospray interface with coaxial sheath flow for high-resolution capillary electrophoresis/mass spectrometry separation. Rapid Commun Mass Spectrom 2007 0.75
109 Profiling of plasma metabolites in postmenopausal women with metabolic syndrome. Menopause 2016 0.75
110 HybGFS: a hybrid method for genome-fingerprint scanning. BMC Bioinformatics 2006 0.75
111 Metabolome analysis of erythrocytes from patients with chronic hepatitis C reveals the etiology of ribavirin-induced hemolysis. Int J Med Sci 2013 0.75
112 Pilot study of changes in salivary metabolic profiles induced by template therapy. In Vivo 2012 0.75
113 [Metabolomics: system for genome interacting with environments through chemical substances]. Tanpakushitsu Kakusan Koso 2005 0.75
114 P-BOSS: a new filtering method for treasure hunting in metabolomics. J Chromatogr A 2007 0.75
115 Comparative metabolite profiling of foxglove aphids (Aulacorthum solani Kaltenbach) on leaves of resistant and susceptible soybean strains. Mol Biosyst 2014 0.75
116 [Analytical system for metabolomics]. Tanpakushitsu Kakusan Koso 2004 0.75
117 Conductivity detection in capillary zone electrophoresis: inspection by PeakMaster. Electrophoresis 2005 0.75
118 Metabolome profiling of floral scent production in Petunia axillaris. Phytochemistry 2013 0.75
119 Serum glycerophosphate levels are increased in Japanese men with type 2 diabetes. Intern Med 2012 0.75