Published in Nucleic Acids Res on February 25, 2010
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophys J (1992) 21.67
Crystal structure of trp repressor/operator complex at atomic resolution. Nature (1988) 7.34
DNA bending and its relation to nucleosome positioning. J Mol Biol (1985) 6.18
The role of DNA shape in protein-DNA recognition. Nature (2009) 5.52
Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target. Nature (1992) 4.12
DNA bending: the prevalence of kinkiness and the virtues of normality. Nucleic Acids Res (1998) 3.67
Structure of DNase I at 2.0 A resolution suggests a mechanism for binding to and cutting DNA. Nature (1986) 2.73
Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro. Nature (1987) 2.49
X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution. J Mol Biol (1992) 2.19
DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex. J Mol Biol (1991) 2.03
A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein. Nat Struct Biol (1996) 1.88
DNA bending by an adenine--thymine tract and its role in gene regulation. Proc Natl Acad Sci U S A (2001) 1.81
DNA structure: what's in charge? J Mol Biol (2000) 1.65
The papillomavirus E2 proteins: structure, function, and biology. Annu Rev Biophys Biomol Struct (2001) 1.63
1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J Mol Biol (2000) 1.63
DNA structure: cations in charge? Curr Opin Struct Biol (1999) 1.61
DNA-cation interactions: The major and minor grooves are flexible ionophores. Curr Opin Struct Biol (2001) 1.54
A unified model for the origin of DNA sequence-directed curvature. Biopolymers (2003) 1.41
The structural basis of DNA target discrimination by papillomavirus E2 proteins. J Biol Chem (2000) 1.32
Integration host factor: putting a twist on protein-DNA recognition. J Mol Biol (2003) 1.28
Crystal structure of the E2 DNA-binding domain from human papillomavirus type 16: implications for its DNA binding-site selection mechanism. J Mol Biol (1998) 1.23
Predicting indirect readout effects in protein-DNA interactions. Proc Natl Acad Sci U S A (2004) 1.23
DNA flexibility variation may dominate DNase I cleavage. Proc Natl Acad Sci U S A (1989) 1.20
Cations as hydrogen bond donors: a view of electrostatic interactions in DNA. Annu Rev Biophys Biomol Struct (2003) 1.10
Probing the conformations of eight cloned DNA dodecamers; CGCGAATTCGCG, CGCGTTAACGCG, CGCGTATACGCG, CGCGATATCGCG, CGCAAATTTGCG, CGCTTTAAAGCG, CGCGGATCCGCG and CGCGGTACCGCG. Nucleic Acids Res (1992) 0.98
Kinetic and equilibrium binding studies of the human papillomavirus type-16 transcription regulatory protein E2 interacting with core enhancer elements. Nucleic Acids Res (1994) 0.97
The papillomavirus E2 DNA binding domain. Front Biosci (2008) 0.88
Allergenicity resulting from functional mimicry of a Toll-like receptor complex protein. Nature (2008) 4.85
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol Cell (2005) 3.62
Structural basis of DNA recognition by p53 tetramers. Mol Cell (2006) 3.29
The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry (2005) 2.98
Single reconstituted neuronal SNARE complexes zipper in three distinct stages. Science (2012) 2.98
The P domain of norovirus capsid protein forms dimer and binds to histo-blood group antigen receptors. J Virol (2004) 2.68
Alterations of the CIB2 calcium- and integrin-binding protein cause Usher syndrome type 1J and nonsyndromic deafness DFNB48. Nat Genet (2012) 2.43
Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites. Structure (2005) 2.17
Eyes absent represents a class of protein tyrosine phosphatases. Nature (2003) 2.05
Effect of force on mononucleosomal dynamics. Proc Natl Acad Sci U S A (2006) 2.03
A direct and melanopsin-dependent fetal light response regulates mouse eye development. Nature (2013) 1.98
Structural basis for the receptor binding specificity of Norwalk virus. J Virol (2008) 1.82
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs. Nat Struct Mol Biol (2010) 1.70
Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization. Biophys J (2003) 1.55
Elucidation of strain-specific interaction of a GII-4 norovirus with HBGA receptors by site-directed mutagenesis study. Virology (2008) 1.54
Concerted binding and bending of DNA by Escherichia coli integration host factor. J Mol Biol (2002) 1.49
Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method. Proc Natl Acad Sci U S A (2007) 1.49
Analyses of variant acid beta-glucosidases: effects of Gaucher disease mutations. J Biol Chem (2005) 1.45
Conservation of carbohydrate binding interfaces: evidence of human HBGA selection in norovirus evolution. PLoS One (2009) 1.42
Structural origins of adenine-tract bending. Proc Natl Acad Sci U S A (2003) 1.41
Bending and flexibility of methylated and unmethylated EcoRI DNA. J Mol Biol (2002) 1.35
Prevalence of antibiotic resistance in drinking water treatment and distribution systems. Appl Environ Microbiol (2009) 1.34
Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping. PLoS One (2006) 1.30
Statistical-mechanical theory of DNA looping. Biophys J (2005) 1.25
The RSC chromatin remodelling ATPase translocates DNA with high force and small step size. EMBO J (2011) 1.24
Predicting indirect readout effects in protein-DNA interactions. Proc Natl Acad Sci U S A (2004) 1.23
Structure of the retinal determination protein Dachshund reveals a DNA binding motif. Structure (2002) 1.22
Stepwise binding and bending of DNA by Escherichia coli integration host factor. Proc Natl Acad Sci U S A (2006) 1.17
The Eyes Absent proteins in development and disease. Cell Mol Life Sci (2012) 1.16
High-throughput approach for detection of DNA bending and flexibility based on cyclization. Proc Natl Acad Sci U S A (2003) 1.14
DNA recognition by the RUNX1 transcription factor is mediated by an allosteric transition in the RUNT domain and by DNA bending. Structure (2002) 1.12
Highly anisotropic stability and folding kinetics of a single coiled coil protein under mechanical tension. J Am Chem Soc (2011) 1.03
Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations. J Mol Biol (2008) 1.03
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations. Nucleic Acids Res (2005) 1.03
Characterization of a plant, tyrosine-specific phosphatase of the aspartyl class. Biochemistry (2005) 1.00
Severe fever with thrombocytopenia syndrome bunyavirus (SFTSV) infections in Zhejiang Province, China. Int J Infect Dis (2012) 1.00
Crystal structure of the dachshund homology domain of human SKI. Structure (2004) 0.99
Secretion of annexin A3 from ovarian cancer cells and its association with platinum resistance in ovarian cancer patients. J Cell Mol Med (2012) 0.99
Single-molecule observation of helix staggering, sliding, and coiled coil misfolding. Proc Natl Acad Sci U S A (2012) 0.98
Branchio-oto-renal syndrome associated mutations in Eyes Absent 1 result in loss of phosphatase activity. FEBS Lett (2006) 0.96
Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF. Proc Natl Acad Sci U S A (2006) 0.95
Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein. Biochemistry (2007) 0.93
DNA-binding and regulation mechanisms of the SIX family of retinal determination proteins. Biochemistry (2008) 0.91
Indirect readout of DNA sequence by papillomavirus E2 proteins depends upon net cation uptake. J Mol Biol (2006) 0.87
The role of nucleotide cofactor binding in cooperativity and specificity of MutS recognition. J Mol Biol (2008) 0.84
Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions. Nucleic Acids Res (2013) 0.84
The EYA tyrosine phosphatase activity is pro-angiogenic and is inhibited by benzbromarone. PLoS One (2012) 0.84
SAM-pointed domain ETS factor mediates epithelial cell-intrinsic innate immune signaling during airway mucous metaplasia. Proc Natl Acad Sci U S A (2012) 0.83
Silibinin ameliorates steatosis and insulin resistance during non-alcoholic fatty liver disease development partly through targeting IRS-1/PI3K/Akt pathway. Int Immunopharmacol (2013) 0.83
CRIM1 complexes with ß-catenin and cadherins, stabilizes cell-cell junctions and is critical for neural morphogenesis. PLoS One (2012) 0.83
Synthesis and characterization of unsymmetrical oxidovanadium complexes: DNA-binding, cleavage studies and antitumor activities. J Inorg Biochem (2012) 0.82
Structure-function analysis of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis. J Mol Biol (2009) 0.82
Combined versatile high-resolution optical tweezers and single-molecule fluorescence microscopy. Rev Sci Instrum (2012) 0.82
Management of complex intracranial aneurysms with bypass surgery: a technique application and experience in 93 patients. Neurosurg Rev (2014) 0.82
Variable expressivity of FGF3 mutations associated with deafness and LAMM syndrome. BMC Med Genet (2011) 0.81
High-resolution optical tweezers for single-molecule manipulation. Yale J Biol Med (2013) 0.80
Structures of the DNA-binding site of Runt-domain transcription regulators. Acta Crystallogr D Biol Crystallogr (2005) 0.79
Distributions, sources and risk assessment of polycyclic aromatic hydrocarbons (PAHs) in topsoil at Ji'nan city, China. Environ Monit Assess (2008) 0.78
Autographa californica multiple nucleopolyhedrovirus PK-1 is essential for nucleocapsid assembly. Virology (2013) 0.78
Gardenia oil increases estradiol levels and bone material density by a mechanism associated with upregulation of COX-2 expression in an ovariectomized rat model. Exp Ther Med (2013) 0.78
Parthenolide induces apoptosis and lytic cytotoxicity in Epstein-Barr virus-positive Burkitt lymphoma. Mol Med Rep (2012) 0.78
AcpM, the meromycolate extension acyl carrier protein of Mycobacterium tuberculosis, is activated by the 4'-phosphopantetheinyl transferase PptT, a potential target of the multistep mycolic acid biosynthesis. Biochemistry (2015) 0.78
Occurrence and variations of five classes of antibiotic resistance genes along the Jiulong River in southeast China. J Environ Biol (2013) 0.77
Bypass of the maxillary to proximal middle cerebral artery or proximal posterior cerebral artery with radial artery graft. Acta Neurochir (Wien) (2011) 0.77
Expression of a novel Ski-like gene in Xenopus development. Gene Expr Patterns (2005) 0.77
Fabrication of Chitosan Scaffolds with Tunable Porous Orientation Structure for Tissue Engineering. J Biomater Sci Polym Ed (2011) 0.77
[Induction of human cervical carcinoma by human papilloma virus and tumor promoters]. Zhonghua Yi Xue Za Zhi (2002) 0.77
Surgical management of vertebral and basilar artery aneurysms: a single center experience in 41 patients. Acta Neurochir (Wien) (2013) 0.77
Meta-analysis of high doses of ambroxol treatment for acute lung injury/acute respiratory distress syndrome based on randomized controlled trials. J Clin Pharmacol (2014) 0.76
Removal of arsenate with hydrous ferric oxide coprecipitation: effect of humic acid. J Environ Sci (China) (2014) 0.76
Correction: A Novel C-Terminal CIB2 (Calcium and Integrin Binding Protein 2) Mutation Associated with Non-Syndromic Hearing Loss in a Hispanic Family. PLoS One (2015) 0.75
Microbiological safety of household membrane water filter. J Environ Biol (2013) 0.75
A new haplogroup pattern displayed in Fujian Han in China. J Hum Genet (2002) 0.75
Fabrication of 3D photonic crystals from chitosan that are responsive to organic solvents. Biomacromolecules (2014) 0.75
Assessing the energy and environmental performance of algae-mediated tertiary treatment of estrogenic compounds. Environ Sci Process Impacts (2015) 0.75
Surgical experience of 179 cases with craniopharyngiomas. Beijing Da Xue Xue Bao (2003) 0.75
RUN-CBFbeta interaction in C. elegans: computational prediction and experimental verification. J Biomol Struct Dyn (2007) 0.75
In memory of Julian Munson Sturtevant. Biophys Chem (2006) 0.75
Efficiencies of different microbial parameters as indicator to assess slight metal pollutions in a farm field near a gold mining area. Environ Monit Assess (2009) 0.75
Fabrication of injectable calcium sulfate bone graft material. J Biomater Sci Polym Ed (2010) 0.75
Effects of carbon, nitrogen and pH on the growth of Aspergillus parasiticus and aflatoxins production in water. J Environ Biol (2013) 0.75
The Ac124 protein is not essential for the propagation of Autographa californica multiple nucleopolyhedrovirus, but it is a viral pathogenicity factor. Arch Virol (2014) 0.75
Facile detection of polycyclic aromatic hydrocarbons by a surface-enhanced Raman scattering sensor based on the Au coffee ring effect. ACS Appl Mater Interfaces (2014) 0.75