Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus.

Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol (2011) 1.45

Parallel evolution of transcriptome architecture during genome reorganization. Genome Res (2011) 1.14

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. Mol Biol Evol (2011) 1.08

Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles (2011) 1.00

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics (2012) 0.98

Translational recoding in archaea. Extremophiles (2012) 0.98

Identification of the nature of reading frame transitions observed in prokaryotic genomes. Nucleic Acids Res (2013) 0.86

Comparative omics-driven genome annotation refinement: application across Yersiniae. PLoS One (2012) 0.86

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res (2016) 0.82

Correlated occurrence and bypass of frame-shifting insertion-deletions (InDels) to give functional proteins. PLoS Genet (2013) 0.81

Extreme challenges and advances in archaeal proteomics. Curr Opin Microbiol (2012) 0.75

Identification of an archaeal maltooligosyltrehalose trehalohydrolase encoded by an interrupted gene. Extremophiles (2017) 0.75

Comparative metagenomics of microbial communities. Science (2005) 25.88

Genome streamlining in a cosmopolitan oceanic bacterium. Science (2005) 8.11

A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell (2004) 8.06

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature (2007) 7.42

The translation factor eIF-4E promotes tumor formation and cooperates with c-Myc in lymphomagenesis. Nat Med (2004) 5.01

Real-time observation on dynamic growth/dissolution of conductive filaments in oxide-electrolyte-based ReRAM. Adv Mater (2012) 4.23

Cultivating the uncultured. Proc Natl Acad Sci U S A (2002) 4.03

Berberine is a novel cholesterol-lowering drug working through a unique mechanism distinct from statins. Nat Med (2004) 3.92

16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis. ISME J (2009) 3.75

p27 phosphorylation by Src regulates inhibition of cyclin E-Cdk2. Cell (2007) 3.40

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One (2010) 3.38

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics (2011) 2.84

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75

Cutting edge: Salmonella AvrA effector inhibits the key proinflammatory, anti-apoptotic NF-kappa B pathway. J Immunol (2002) 2.70

Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature (2005) 2.59

Novel role of the vitamin D receptor in maintaining the integrity of the intestinal mucosal barrier. Am J Physiol Gastrointest Liver Physiol (2007) 2.45

A comprehensive mapping of HIV-1 genotypes in various risk groups and regions across China based on a nationwide molecular epidemiologic survey. PLoS One (2012) 2.44

Improved outcomes from the administration of progesterone for patients with acute severe traumatic brain injury: a randomized controlled trial. Crit Care (2008) 2.33

Proteomic survey of metabolic pathways in rice. Proc Natl Acad Sci U S A (2002) 2.27

Sox2 cooperates with inflammation-mediated Stat3 activation in the malignant transformation of foregut basal progenitor cells. Cell Stem Cell (2013) 2.23

Approaching the ideal elastic limit of metallic glasses. Nat Commun (2012) 2.05

Strong crystal size effect on deformation twinning. Nature (2010) 2.02

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Hum Mutat (2011) 1.98

Salmonella effector AvrA regulation of colonic epithelial cell inflammation by deubiquitination. Am J Pathol (2007) 1.94

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function. PLoS One (2010) 1.85

Repeated stress causes cognitive impairment by suppressing glutamate receptor expression and function in prefrontal cortex. Neuron (2012) 1.83

Generation of functional blood vessels from a single c-kit+ adult vascular endothelial stem cell. PLoS Biol (2012) 1.79

PipeAlign: A new toolkit for protein family analysis. Nucleic Acids Res (2003) 1.78

Label-free detection of biomolecular interactions using BioLayer interferometry for kinetic characterization. Comb Chem High Throughput Screen (2009) 1.78

Early hypercytokinemia is associated with interferon-induced transmembrane protein-3 dysfunction and predictive of fatal H7N9 infection. Proc Natl Acad Sci U S A (2013) 1.74

Berberine lowers blood glucose in type 2 diabetes mellitus patients through increasing insulin receptor expression. Metabolism (2009) 1.73

beta-Catenin activity negatively regulates bacteria-induced inflammation. Lab Invest (2007) 1.73

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol (2006) 1.68

A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PLoS One (2011) 1.65

Molecular momentum transport at fluid-solid interfaces in MEMS/NEMS: a review. Int J Mol Sci (2009) 1.65

Vitamin D receptor negatively regulates bacterial-stimulated NF-kappaB activity in intestine. Am J Pathol (2010) 1.57

Lactobacillus rhamnosus GG on rotavirus-induced injury of ileal epithelium in gnotobiotic pigs. J Pediatr Gastroenterol Nutr (2013) 1.52

Identification and characterization of novel microRNAs from Schistosoma japonicum. PLoS One (2008) 1.52

Structural basis for natural lactonase and promiscuous phosphotriesterase activities. J Mol Biol (2008) 1.43

Visualizing size-dependent deformation mechanism transition in Sn. Sci Rep (2013) 1.39

A multivalent assay to detect glycosaminoglycan, protein, collagen, RNA, and DNA content in milligram samples of cartilage or hydrogel-based repair cartilage. Anal Biochem (2002) 1.37

Chitosan-glycerol phosphate/blood implants improve hyaline cartilage repair in ovine microfracture defects. J Bone Joint Surg Am (2005) 1.36

Genotyping for Kidd, Kell, Duffy, Scianna, and RHCE blood group antigens polymorphisms in Jiangsu Chinese Han. Chin Med J (Engl) (2012) 1.36

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. Genome Res (2008) 1.36

Social support as a buffer for perceived unfair treatment among Filipino Americans: differences between San Francisco and Honolulu. Am J Public Health (2006) 1.36

Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation. Mol Microbiol (2003) 1.32

Drilling and microfracture lead to different bone structure and necrosis during bone-marrow stimulation for cartilage repair. J Orthop Res (2009) 1.29

Gastrodin inhibits expression of inducible NO synthase, cyclooxygenase-2 and proinflammatory cytokines in cultured LPS-stimulated microglia via MAPK pathways. PLoS One (2011) 1.28

Oligosaccharide synthesis by glycosynthases. Trends Biotechnol (2004) 1.28

Salmonella type III effector AvrA stabilizes cell tight junctions to inhibit inflammation in intestinal epithelial cells. PLoS One (2008) 1.28

A thermostable phosphotriesterase from the archaeon Sulfolobus solfataricus: cloning, overexpression and properties. Extremophiles (2005) 1.27

Berberine reduces insulin resistance through protein kinase C-dependent up-regulation of insulin receptor expression. Metabolism (2009) 1.26

Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1. Proc Natl Acad Sci U S A (2011) 1.26

Salmonella regulation of intestinal stem cells through the Wnt/beta-catenin pathway. FEBS Lett (2010) 1.25

OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinformatics (2011) 1.25

Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.25

Allosteric control of ligand selectivity between estrogen receptors alpha and beta: implications for other nuclear receptors. Mol Cell (2004) 1.24

Src promotes estrogen-dependent estrogen receptor alpha proteolysis in human breast cancer. J Clin Invest (2007) 1.24

Structural analysis of the Sulfolobus solfataricus MCM protein N-terminal domain. Nucleic Acids Res (2008) 1.22

Unusual microbial xylanases from insect guts. Appl Environ Microbiol (2004) 1.22

The hydroxyurea-induced small GTP-binding protein SAR modulates gamma-globin gene expression in human erythroid cells. Blood (2005) 1.19

Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.18

Adding an unnatural covalent bond to proteins through proximity-enhanced bioreactivity. Nat Methods (2013) 1.17

PVF2, a PDGF/VEGF-like growth factor, induces hemocyte proliferation in Drosophila larvae. EMBO Rep (2002) 1.17

Geobacter sulfurreducens strain engineered for increased rates of respiration. Metab Eng (2008) 1.17

Crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus at 1.85 A resolution. J Mol Biol (2002) 1.17

Vitamin D, vitamin D receptor, and macroautophagy in inflammation and infection. Discov Med (2011) 1.17

Photoreceptor IFT complexes containing chaperones, guanylyl cyclase 1 and rhodopsin. Traffic (2009) 1.16

Erythropoietin protects intestinal epithelial barrier function and lowers the incidence of experimental neonatal necrotizing enterocolitis. J Biol Chem (2011) 1.16

Proteins from extremophiles as stable tools for advanced biotechnological applications of high social interest. J R Soc Interface (2007) 1.15

MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia. Nucleic Acids Res (2012) 1.15

Global proteome discovery using an online three-dimensional LC-MS/MS. J Proteome Res (2005) 1.14

The human GINS complex binds to and specifically stimulates human DNA polymerase alpha-primase. EMBO Rep (2006) 1.12

The archaeal eIF2 homologue: functional properties of an ancient translation initiation factor. Nucleic Acids Res (2005) 1.12

An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum. PLoS Negl Trop Dis (2010) 1.11

Archaeal DNA replication: spotlight on a rapidly moving field. Extremophiles (2002) 1.09

Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? Genome Biol (2007) 1.07

WW domain binding protein-2, an E6-associated protein interacting protein, acts as a coactivator of estrogen and progesterone receptors. Mol Endocrinol (2006) 1.07

Characterization of subchondral bone repair for marrow-stimulated chondral defects and its relationship to articular cartilage resurfacing. Am J Sports Med (2011) 1.07

Depth of subchondral perforation influences the outcome of bone marrow stimulation cartilage repair. J Orthop Res (2011) 1.07

Recoding in archaea. Mol Microbiol (2005) 1.07

Translation initiation in Archaea: conserved and domain-specific features. Biochem Soc Trans (2011) 1.06

Pathophysiological and psychosocial study in patients with functional vomiting. J Neurogastroenterol Motil (2010) 1.06

Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus. Biochemistry (2003) 1.06

Genetic and temporal dynamics of human immunodeficiency virus type 1 CRF07_BC in Xinjiang, China. J Gen Virol (2009) 1.05

Chronic effects of a Salmonella type III secretion effector protein AvrA in vivo. PLoS One (2010) 1.05

Salmonella typhimurium infection increases p53 acetylation in intestinal epithelial cells. Am J Physiol Gastrointest Liver Physiol (2010) 1.05

Plasma membrane phospholipid scramblase 1 promotes EGF-dependent activation of c-Src through the epidermal growth factor receptor. J Biol Chem (2003) 1.05

Discovery of pectin-degrading enzymes and directed evolution of a novel pectate lyase for processing cotton fabric. J Biol Chem (2004) 1.05

Biochemical characterization of a CDC6-like protein from the crenarchaeon Sulfolobus solfataricus. J Biol Chem (2003) 1.05

Triple negative breast cancer initiating cell subsets differ in functional and molecular characteristics and in γ-secretase inhibitor drug responses. EMBO Mol Med (2013) 1.04

ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res (2006) 1.04

Prevalence of Parkinson's disease and related disorders in the elderly population of greater Beijing, China. Mov Disord (2003) 1.04

mTORC1 links protein quality and quantity control by sensing chaperone availability. J Biol Chem (2010) 1.04

Resveratrol inhibits LPS-induced MAPKs activation via activation of the phosphatidylinositol 3-kinase pathway in murine RAW 264.7 macrophage cells. PLoS One (2012) 1.03

First report on co-occurrence knockdown resistance mutations and susceptibility to beta-cypermethrin in Anopheles sinensis from Jiangsu Province, China. PLoS One (2012) 1.02