Computational complementation: a modelling approach to study signalling mechanisms during legume autoregulation of nodulation.

PubWeight™: 0.86‹?›

🔗 View Article (PMC 2829028)

Published in PLoS Comput Biol on February 26, 2010

Authors

Liqi Han1, Jim Hanan, Peter M Gresshoff

Author Affiliations

1: ARC Centre of Excellence for Integrative Legume Research, The University of Queensland, Brisbane, Queensland, Australia.

Articles cited by this

Systems biology: a brief overview. Science (2002) 14.69

An auxin-driven polarized transport model for phyllotaxis. Proc Natl Acad Sci U S A (2006) 4.41

Legumes: importance and constraints to greater use. Plant Physiol (2003) 4.36

Isolation and properties of soybean [Glycine max (L.) Merr.] mutants that nodulate in the presence of high nitrate concentrations. Proc Natl Acad Sci U S A (1985) 3.27

Functional-structural plant modelling. New Phytol (2005) 3.06

Complexity in biological signaling systems. Science (1999) 3.05

Shoot control of root development and nodulation is mediated by a receptor-like kinase. Nature (2002) 3.04

Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science (2002) 2.99

Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.88

A Supernodulation and Nitrate-Tolerant Symbiotic (nts) Soybean Mutant. Plant Physiol (1985) 2.88

Regulation of the soybean-Rhizobium nodule symbiosis by shoot and root factors. Plant Physiol (1986) 2.80

Using L-systems for modeling source-sink interactions, architecture and physiology of growing trees: the L-PEACH model. New Phytol (2005) 2.64

The Medicago truncatula SUNN gene encodes a CLV1-like leucine-rich repeat receptor kinase that regulates nodule number and root length. Plant Mol Biol (2005) 2.12

Reviewing models of auxin canalization in the context of leaf vein pattern formation in Arabidopsis. Plant J (2005) 2.07

Rice morphogenesis and plant architecture: measurement, specification and the reconstruction of structural development by 3D architectural modelling. Ann Bot (2005) 1.98

Control of bud activation by an auxin transport switch. Proc Natl Acad Sci U S A (2009) 1.97

Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Plant Cell Physiol (2008) 1.92

Role of cytokinin and auxin in shaping root architecture: regulating vascular differentiation, lateral root initiation, root apical dominance and root gravitropism. Ann Bot (2006) 1.82

Long-distance signaling to control root nodule number. Curr Opin Plant Biol (2006) 1.39

Barley morphology, genetics and hormonal regulation of internode elongation modelled by a relational growth grammar. New Phytol (2005) 1.36

Modeling of signaling networks. Bioessays (2002) 1.31

Computational modeling and molecular physiology experiments reveal new insights into shoot branching in pea. Plant Cell (2009) 1.13

Towards the systems biology of auxin-transport-mediated patterning. Trends Plant Sci (2007) 1.11

Suppression of hypernodulation in soybean by a leaf-extracted, NARK- and Nod factor-dependent, low molecular mass fraction. New Phytol (2010) 1.08

Promoters of orthologous Glycine max and Lotus japonicus nodulation autoregulation genes interchangeably drive phloem-specific expression in transgenic plants. Mol Plant Microbe Interact (2007) 1.04

Soybean nodule autoregulation receptor kinase phosphorylates two kinase-associated protein phosphatases in vitro. J Biol Chem (2008) 1.04

A rule-based model of barley morphogenesis, with special respect to shading and gibberellic acid signal transduction. Ann Bot (2007) 1.02

Achieving the in silico plant. Systems biology and the future of plant biological research. Plant Physiol (2003) 0.97

Investigation of downstream signals of the soybean autoregulation of nodulation receptor kinase GmNARK. Mol Plant Microbe Interact (2008) 0.96

Genetic analysis of ethylene regulation of legume nodulation. Plant Signal Behav (2009) 0.95

Post-genomic insights into plant nodulation symbioses. Genome Biol (2003) 0.92

On systems thinking, systems biology, and the in silico plant. Plant Physiol (2004) 0.89

Computational analysis of flowering in pea (Pisum sativum). New Phytol (2009) 0.83

Articles by these authors

Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science (2002) 2.99

Molecular analysis of legume nodule development and autoregulation. J Integr Plant Biol (2010) 2.00

Bioinformatic analysis of the CLE signaling peptide family. BMC Plant Biol (2008) 1.66

Agrobacterium rhizogenes-mediated transformation of soybean to study root biology. Nat Protoc (2007) 1.64

Inoculation- and nitrate-induced CLE peptides of soybean control NARK-dependent nodule formation. Mol Plant Microbe Interact (2011) 1.47

Common regulatory themes in meristem development and whole-plant homeostasis. Curr Opin Plant Biol (2006) 1.39

Molecular mechanisms controlling legume autoregulation of nodulation. Ann Bot (2011) 1.29

A canopy architectural model to study the competitive ability of chickpea with sowthistle. Ann Bot (2008) 1.25

Genetics of symbiosis in Lotus japonicus: recombinant inbred lines, comparative genetic maps, and map position of 35 symbiotic loci. Mol Plant Microbe Interact (2006) 1.21

Using the canonical modelling approach to simplify the simulation of function in functional-structural plant models. New Phytol (2005) 1.18

Silver staining DNA in polyacrylamide gels. Nat Protoc (2007) 1.15

Computational modeling and molecular physiology experiments reveal new insights into shoot branching in pea. Plant Cell (2009) 1.13

Suppression of hypernodulation in soybean by a leaf-extracted, NARK- and Nod factor-dependent, low molecular mass fraction. New Phytol (2010) 1.08

The glycine max xylem sap and apoplast proteome. J Proteome Res (2007) 1.07

Fast, efficient and reproducible genetic transformation of Phaseolus spp. by Agrobacterium rhizogenes. Nat Protoc (2007) 1.05

Asparagine as a major factor in the N-feedback regulation of N2 fixation in Medicago truncatula. Physiol Plant (2010) 1.05

Soybean nodule autoregulation receptor kinase phosphorylates two kinase-associated protein phosphatases in vitro. J Biol Chem (2008) 1.04

Promoters of orthologous Glycine max and Lotus japonicus nodulation autoregulation genes interchangeably drive phloem-specific expression in transgenic plants. Mol Plant Microbe Interact (2007) 1.04

Inactivation of duplicated nod factor receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.). Plant Cell Physiol (2009) 1.03

Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation. Funct Integr Genomics (2009) 1.03

Towards aspect-oriented functional--structural plant modelling. Ann Bot (2011) 1.02

Nodulation factor receptor kinase 1α controls nodule organ number in soybean (Glycine max L. Merr). Plant J (2010) 1.02

Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots. Plant Biotechnol J (2012) 1.02

A functional-structural kiwifruit vine model integrating architecture, carbon dynamics and effects of the environment. Ann Bot (2010) 1.01

Models of long-distance transport: how is carrier-dependent auxin transport regulated in the stem? New Phytol (2012) 1.01

Genomic expression profiling of mature soybean (Glycine max) pollen. BMC Plant Biol (2009) 1.00

Molecular analysis of the pathway for the synthesis of thiol tripeptides in the model legume Lotus japonicus. Mol Plant Microbe Interact (2003) 1.00

An efficient petiole-feeding bioassay for introducing aqueous solutions into dicotyledonous plants. Nat Protoc (2010) 1.00

Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata. PLoS One (2012) 0.98

Investigation of downstream signals of the soybean autoregulation of nodulation receptor kinase GmNARK. Mol Plant Microbe Interact (2008) 0.96

The Q-type C2H2 zinc finger subfamily of transcription factors in Triticum aestivum is predominantly expressed in roots and enriched with members containing an EAR repressor motif and responsive to drought stress. Plant Mol Biol (2008) 0.95

Structure-function analysis of the GmRIC1 signal peptide and CLE domain required for nodulation control in soybean. J Exp Bot (2013) 0.92

Ethylene insensitivity conferred by a mutated Arabidopsis ethylene receptor gene alters nodulation in transgenic Lotus japonicus. Ann Bot (2009) 0.92

pGFPGUSPlus, a new binary vector for gene expression studies and optimising transformation systems in plants. Biotechnol Lett (2007) 0.91

Systemic regulation of soybean nodulation by acidic growth conditions. Plant Physiol (2012) 0.91

Autoregulation of nodulation (AON) in Pisum sativum (pea) involves signalling events associated with both nodule primordia development and nitrogen fixation. J Plant Physiol (2009) 0.88

A novel ABA insensitive mutant of Lotus japonicus with a wilty phenotype displays unaltered nodulation regulation. Mol Plant (2009) 0.88

Molecular analysis of lipoxygenases associated with nodule development in soybean. Mol Plant Microbe Interact (2008) 0.87

A standardized method for analysis of Medicago truncatula phenotypic development. Plant Physiol (2006) 0.86

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway. Plant Biotechnol J (2012) 0.86

Mechanistic action of gibberellins in legume nodulation. J Integr Plant Biol (2014) 0.86

pHairyRed: a novel binary vector containing the DsRed2 reporter gene for visual selection of transgenic hairy roots. Mol Plant (2011) 0.86

A novel cis-acting element, ESP, contributes to high-level endosperm-specific expression in an oat globulin promoter. Plant Mol Biol (2006) 0.85

A functional-structural modelling approach to autoregulation of nodulation. Ann Bot (2010) 0.83

Computational analysis of flowering in pea (Pisum sativum). New Phytol (2009) 0.83

Agrobacterium rhizogenes transformation of the Phaseolus spp.: a tool for functional genomics. Mol Plant Microbe Interact (2006) 0.82

The REDUCED LEAFLET genes encode key components of the trans-acting small interfering RNA pathway and regulate compound leaf and flower development in Lotus japonicus. Plant Physiol (2009) 0.82

Nodulation deficiency caused by fast neutron mutagenesis of the model legume Lotus japonicus. J Plant Physiol (2007) 0.81

Seed shape in model legumes: approximation by a cardioid reveals differences in ethylene insensitive mutants of Lotus japonicus and Medicago truncatula. J Plant Physiol (2012) 0.81

Rhizobial and mycorrhizal symbioses in Lotus japonicus require lectin nucleotide phosphohydrolase, which acts upstream of calcium signaling. Plant Physiol (2012) 0.81

Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization. Genome Biol (2013) 0.79

Classical ethylene insensitive mutants of the Arabidopsis EIN2 orthologue lack the expected 'hypernodulation' response in Lotus japonicus. J Integr Plant Biol (2013) 0.79

Tree legumes as feedstock for sustainable biofuel production: Opportunities and challenges. J Plant Physiol (2011) 0.78

Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts. Proc Biol Sci (2013) 0.78

Glycine max non-nodulation locus rj1: a recombinogenic region encompassing a SNP in a lysine motif receptor-like kinase (GmNFR1α). Theor Appl Genet (2010) 0.77

Regulation of legume nodulation by acidic growth conditions. Plant Signal Behav (2013) 0.77

The soybean (Glycine max) nodulation-suppressive CLE peptide, GmRIC1, functions interspecifically in common white bean (Phaseolus vulgaris), but not in a supernodulating line mutated in the receptor PvNARK. Plant Biotechnol J (2014) 0.76

Evolutionary duplication of lipo-oligochitin-like receptor genes in soybean differentiates their function in cell division and cell invasion. Plant Signal Behav (2011) 0.75

Vermiculite's strong buffer capacity renders it unsuitable for studies of acidity on soybean (Glycine max L.) nodulation and growth. BMC Res Notes (2013) 0.75

Agrobacterium rhizogenes transformed soybean roots differ in their nodulation and nitrogen fixation response to genistein and salt stress. World J Microbiol Biotechnol (2013) 0.75

Ultrasensitive determination of absolute mRNA amounts at attomole levels of nearly identical plant genes with high-throughput mass spectrometry (MassARRAY). Plant Cell Physiol (2007) 0.75

Partial automation of database processing of simulation outputs from L-systems models of plant morphogenesis. Biosystems (2002) 0.75

Modeling the fitness of plant morphologies across three levels of complexity. Biosystems (2008) 0.75

11th International Congress on Molecular Plant-Microbe Interactions held at St. Petersburg--a report. Indian J Exp Biol (2003) 0.75

A chimeric cry8Ea1 gene flanked by MARs efficiently controls Holotrichia parallela. Plant Cell Rep (2013) 0.75