Published in Plant Cell on October 30, 2012
Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany. Ann Bot (2013) 3.28
Image-based high-throughput field phenotyping of crop roots. Plant Physiol (2014) 1.32
Modeling regulatory networks to understand plant development: small is beautiful. Plant Cell (2012) 1.13
Branching out in roots: uncovering form, function, and regulation. Plant Physiol (2014) 1.08
Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytol (2014) 0.95
Mathematical models light up plant signaling. Plant Cell (2014) 0.93
Bridging the genotype-phenotype gap: what does it take? J Physiol (2013) 0.93
Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance. Front Plant Sci (2016) 0.90
Vertex-element models for anisotropic growth of elongated plant organs. Front Plant Sci (2013) 0.89
Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere. Plant Physiol (2013) 0.85
Tree Topology Estimation. IEEE Trans Pattern Anal Mach Intell (2015) 0.85
New insights into root gravitropic signalling. J Exp Bot (2014) 0.83
An approach to multiscale modelling with graph grammars. Ann Bot (2014) 0.80
Modelling hormonal response and development. Trends Plant Sci (2014) 0.79
Mechanosensitive control of plant growth: bearing the load, sensing, transducing, and responding. Front Plant Sci (2015) 0.78
Modeling the effects of light and sucrose on in vitro propagated plants: a multiscale system analysis using artificial intelligence technology. PLoS One (2014) 0.78
X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture. Plant Physiol (2016) 0.78
Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops. Front Plant Sci (2016) 0.77
Jasmonates: Emerging Players in Controlling Temperature Stress Tolerance. Front Plant Sci (2016) 0.77
In silico plant biology comes of age. Plant Cell (2012) 0.77
Localized auxin peaks in concentration-based transport models of the shoot apical meristem. J R Soc Interface (2015) 0.75
Models to reconcile plant science and stochasticity. Front Plant Sci (2014) 0.75
Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Front Plant Sci (2017) 0.75
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (2003) 32.92
A guided tour into subcellular colocalization analysis in light microscopy. J Microsc (2006) 16.73
An analysis of irreversible plant cell elongation. J Theor Biol (1965) 10.84
Growth of the plant cell wall. Nat Rev Mol Cell Biol (2005) 9.50
Automatic and quantitative measurement of protein-protein colocalization in live cells. Biophys J (2004) 7.62
The Osmotic Cell, Solute Diffusibility, and the Plant Water Economy. Plant Physiol (1958) 7.57
Metabolic and physical control of cell elongation rate: in vivo studies in nitella. Plant Physiol (1971) 6.92
Two endogenous proteins that induce cell wall extension in plants. Plant Cell (1992) 6.30
Growth-induced Water Potentials in Plant Cells and Tissues. Plant Physiol (1978) 5.27
Developmental patterning by mechanical signals in Arabidopsis. Science (2008) 5.04
Functional-structural plant modelling: a new versatile tool in crop science. J Exp Bot (2009) 4.98
Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell (2006) 4.87
Simulation of biological cell sorting using a two-dimensional extended Potts model. Phys Rev Lett (1992) 4.85
Light microscopy techniques for live cell imaging. Science (2003) 4.77
Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature (2007) 4.50
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nat Methods (2010) 4.47
Cellular tensegrity: defining new rules of biological design that govern the cytoskeleton. J Cell Sci (1993) 4.45
Propagation of Turgor and Other Properties Through Cell Aggregations. Plant Physiol (1958) 4.41
An auxin-driven polarized transport model for phyllotaxis. Proc Natl Acad Sci U S A (2006) 4.41
Modelling and analysis of gene regulatory networks. Nat Rev Mol Cell Biol (2008) 4.36
Simulation of the differential adhesion driven rearrangement of biological cells. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics (1993) 3.95
The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature. Plant Cell Physiol (2002) 3.74
The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nat Cell Biol (2005) 3.61
Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol (2011) 3.50
Water transport through plant tissue: the apoplasm and symplasm pathways. J Theor Biol (1976) 3.48
Evolution and development of inflorescence architectures. Science (2007) 3.33
Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol (2010) 3.30
Auxin receptors and plant development: a new signaling paradigm. Annu Rev Cell Dev Biol (2008) 3.21
A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature (2012) 2.86
Anisotropic expansion of the plant cell wall. Annu Rev Cell Dev Biol (2005) 2.86
Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis. Nature (2008) 2.84
High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol (2009) 2.78
The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol (2011) 2.74
Root system architecture from coupling cell shape to auxin transport. PLoS Biol (2008) 2.70
Growth-sustaining Water Potential Distributions in the Primary Corn Root: A NONCOMPARTMENTED CONTINUUM MODEL. Plant Physiol (1980) 2.70
Colocalization of fluorescent markers in confocal microscope images of plant cells. Nat Protoc (2008) 2.53
Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transport. PLoS Biol (2010) 2.44
EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture. Plant J (2008) 2.43
The importance of root gravitropism for inter-root competition and phosphorus acquisition efficiency: results from a geometric simulation model. Plant Soil (2000) 2.39
Combined MRI-PET dissects dynamic changes in plant structures and functions. Plant J (2009) 2.32
A novel image-analysis toolbox enabling quantitative analysis of root system architecture. Plant Physiol (2011) 2.30
The role of aquaporins in root water uptake. Ann Bot (2002) 2.18
Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis. Dev Cell (2011) 2.12
The genetics of geometry. Proc Natl Acad Sci U S A (2004) 2.10
Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils. J Exp Bot (2010) 2.01
RooTrak: automated recovery of three-dimensional plant root architecture in soil from x-ray microcomputed tomography images using visual tracking. Plant Physiol (2011) 2.00
Real-time imaging of cellulose reorientation during cell wall expansion in Arabidopsis roots. Plant Physiol (2009) 1.94
Auxin transport through non-hair cells sustains root-hair development. Nat Cell Biol (2008) 1.94
Root growth in Arabidopsis requires gibberellin/DELLA signalling in the endodermis. Nat Cell Biol (2008) 1.89
Auxin transport: a field in flux. Trends Plant Sci (2006) 1.78
A framework for three-dimensional simulation of morphogenesis. IEEE/ACM Trans Comput Biol Bioinform (2006) 1.63
Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Curr Biol (2009) 1.62
Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation. J Exp Bot (2007) 1.60
The 39 steps: a cautionary tale of quantitative 3-D fluorescence microscopy. Biotechniques (2000) 1.56
Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development. PLoS Comput Biol (2008) 1.53
Coordination of plant cell division and expansion in a simple morphogenetic system. Proc Natl Acad Sci U S A (2010) 1.52
A thermodynamic switch modulates abscisic acid receptor sensitivity. EMBO J (2011) 1.44
Auxin regulates aquaporin function to facilitate lateral root emergence. Nat Cell Biol (2012) 1.44
Turning a plant tissue into a living cell froth through isotropic growth. Proc Natl Acad Sci U S A (2009) 1.38
High-throughput feature counting and measurement of roots. Bioinformatics (2011) 1.38
Integrated genetic and computation methods for in planta cytometry. Nat Methods (2012) 1.36
Computational morphodynamics: a modeling framework to understand plant growth. Annu Rev Plant Biol (2010) 1.33
An auxin transport-based model of root branching in Arabidopsis thaliana. PLoS One (2008) 1.33
A system for modelling cell-cell interactions during plant morphogenesis. Ann Bot (2007) 1.32
Systems analysis of shoot apical meristem growth and development: integrating hormonal and mechanical signaling. Plant Cell (2012) 1.31
Mathematical models of plant-soil interaction. Philos Trans A Math Phys Eng Sci (2008) 1.30
The MYB23 gene provides a positive feedback loop for cell fate specification in the Arabidopsis root epidermis. Plant Cell (2009) 1.29
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. Plant Cell (2012) 1.27
Chemically mediated mechanical expansion of the pollen tube cell wall. Biophys J (2011) 1.27
Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Mol Syst Biol (2010) 1.26
Time-lapse analysis of stem-cell divisions in the Arabidopsis thaliana root meristem. Plant J (2006) 1.26
CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images. Plant Cell (2012) 1.26
Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. BMC Syst Biol (2010) 1.25
VirtualLeaf: an open-source framework for cell-based modeling of plant tissue growth and development. Plant Physiol (2010) 1.25
A feedback mechanism controlling SCRAMBLED receptor accumulation and cell-type pattern in Arabidopsis. Curr Biol (2008) 1.25
Gibberellin regulates PIN-FORMED abundance and is required for auxin transport-dependent growth and development in Arabidopsis thaliana. Plant Cell (2011) 1.24
A mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermis. PLoS Biol (2008) 1.24
The mechanics behind plant development. New Phytol (2009) 1.23
Spatio-temporal sequence of cross-regulatory events in root meristem growth. Proc Natl Acad Sci U S A (2010) 1.23
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proc Natl Acad Sci U S A (2012) 1.22
The mechanical basis of cell rearrangement. I. Epithelial morphogenesis during Fundulus epiboly. Development (1990) 1.20
Calcium pectate chemistry controls growth rate of Chara corallina. J Exp Bot (2006) 1.18
Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research. Plant J (2010) 1.13
Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proc Natl Acad Sci U S A (2012) 1.12
Auxin transport-feedback models of patterning in plants. Plant Cell Environ (2009) 1.11
Root growth models: towards a new generation of continuous approaches. J Exp Bot (2010) 1.10
Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. Mol Syst Biol (2010) 1.08
Growth-induced hormone dilution can explain the dynamics of plant root cell elongation. Proc Natl Acad Sci U S A (2012) 1.06
Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model. BMC Syst Biol (2008) 1.06
Auxin-regulated cell polarity: an inside job? Trends Plant Sci (2009) 1.06
An introduction to the mechanics of morphogenesis for plant biologists. Trends Plant Sci (2010) 1.04
A plausible mechanism for auxin patterning along the developing root. BMC Syst Biol (2010) 1.04
Auxin carriers localization drives auxin accumulation in plant cells infected by Frankia in Casuarina glauca actinorhizal nodules. Plant Physiol (2010) 1.03
Modeling the hydraulics of root growth in three dimensions with phloem water sources. Plant Physiol (2009) 1.02
A model of cell wall expansion based on thermodynamics of polymer networks. Biophys J (1998) 1.02
A model of crosslink kinetics in the expanding plant cell wall: yield stress and enzyme action. J Theor Biol (2012) 1.01
Quantitative control of organ shape by combinatorial gene activity. PLoS Biol (2010) 1.00
Characterization of cytokinin and adenine transport in Arabidopsis cell cultures. Plant Physiol (2008) 0.97
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nat Methods (2010) 4.47
The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nat Cell Biol (2005) 3.61
Dissecting Arabidopsis lateral root development. Trends Plant Sci (2003) 3.52
Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development (2007) 3.31
Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation. Plant Cell (2007) 3.14
Arabidopsis lateral root development: an emerging story. Trends Plant Sci (2009) 3.08
Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.88
A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature (2012) 2.86
A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr Biol (2010) 2.81
High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol (2009) 2.78
The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol (2011) 2.74
Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol (2003) 2.73
Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell (2004) 2.55
Colocalization of fluorescent markers in confocal microscope images of plant cells. Nat Protoc (2008) 2.53
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science (2009) 2.52
RooTrak: automated recovery of three-dimensional plant root architecture in soil from x-ray microcomputed tomography images using visual tracking. Plant Physiol (2011) 2.00
Auxin transport through non-hair cells sustains root-hair development. Nat Cell Biol (2008) 1.94
Root growth in Arabidopsis requires gibberellin/DELLA signalling in the endodermis. Nat Cell Biol (2008) 1.89
Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell (2014) 1.87
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell (2012) 1.86
Bimodular auxin response controls organogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2010) 1.78
Auxin transport: a field in flux. Trends Plant Sci (2006) 1.78
Lateral root emergence: a difficult birth. J Exp Bot (2009) 1.64
Brassinosteroid perception in the epidermis controls root meristem size. Development (2011) 1.62
Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Curr Biol (2009) 1.62
RootNav: navigating images of complex root architectures. Plant Physiol (2013) 1.61
A protocol to analyse cellular dynamics during plant development. Plant J (2005) 1.55
Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development. PLoS Comput Biol (2008) 1.53
Clinical evaluation of a non-immersive virtual environment in stroke rehabilitation. Clin Rehabil (2009) 1.47
Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. Plant Cell (2013) 1.46
Auxin regulates aquaporin function to facilitate lateral root emergence. Nat Cell Biol (2012) 1.44
Cell polarity signaling in Arabidopsis involves a BFA-sensitive auxin influx pathway. Curr Biol (2002) 1.41
Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis. Plant Physiol (2010) 1.38
Floral organ abscission peptide IDA and its HAE/HSL2 receptors control cell separation during lateral root emergence. Proc Natl Acad Sci U S A (2013) 1.38
An auxin transport-based model of root branching in Arabidopsis thaliana. PLoS One (2008) 1.33
Systems analysis of shoot apical meristem growth and development: integrating hormonal and mechanical signaling. Plant Cell (2012) 1.31
Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues. Proc Natl Acad Sci U S A (2013) 1.27
The case for morphogens in plants. Nat Cell Biol (2003) 1.26
CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images. Plant Cell (2012) 1.26
Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. BMC Syst Biol (2010) 1.25
Hormonal regulation of root growth: integrating local activities into global behaviour. Trends Plant Sci (2012) 1.24
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol (2013) 1.23
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proc Natl Acad Sci U S A (2012) 1.22
Post-embryonic root organogenesis in cereals: branching out from model plants. Trends Plant Sci (2013) 1.13
Auxin reflux between the endodermis and pericycle promotes lateral root initiation. EMBO J (2012) 1.12
Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proc Natl Acad Sci U S A (2012) 1.12
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Mol Syst Biol (2013) 1.08
Growth-induced hormone dilution can explain the dynamics of plant root cell elongation. Proc Natl Acad Sci U S A (2012) 1.06
L-py: an L-system simulation framework for modeling plant architecture development based on a dynamic language. Front Plant Sci (2012) 1.06
New insight into the biochemical mechanisms regulating auxin transport in plants. Biochem J (2007) 1.04
Recovering the dynamics of root growth and development using novel image acquisition and analysis methods. Philos Trans R Soc Lond B Biol Sci (2012) 1.04
Comprehensive metabolic profiling of mono- and polyglutamated folates and their precursors in plant and animal tissue using liquid chromatography/negative ion electrospray ionisation tandem mass spectrometry. Rapid Commun Mass Spectrom (2005) 1.04
Plant systems biology: network matters. Plant Cell Environ (2011) 1.03
On the role of stress anisotropy in the growth of stems. J Exp Bot (2013) 1.03
Conserved Arabidopsis ECHIDNA protein mediates trans-Golgi-network trafficking and cell elongation. Proc Natl Acad Sci U S A (2011) 1.03
Auxin carriers localization drives auxin accumulation in plant cells infected by Frankia in Casuarina glauca actinorhizal nodules. Plant Physiol (2010) 1.03
Mathematical modelling of engineered tissue growth using a multiphase porous flow mixture theory. J Math Biol (2006) 1.02
Elucidating the interactions between the adhesive and transcriptional functions of beta-catenin in normal and cancerous cells. J Theor Biol (2007) 1.01
Folate biofortification in food plants. Trends Plant Sci (2007) 1.01
Similarities and gradients in growth unit branching patterns during ontogeny in "Fuji" apple trees: a stochastic approach. J Exp Bot (2006) 0.99
SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle. Plant Physiol (2010) 0.98
A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes. J Exp Bot (2014) 0.98
Mathematical modelling of drug transport in tumour multicell spheroids and monolayer cultures. Math Biosci (2003) 0.97
Theoretical models for coronary vascular biomechanics: progress & challenges. Prog Biophys Mol Biol (2010) 0.96
Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography. PLoS One (2013) 0.96
Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots. Proc Natl Acad Sci U S A (2013) 0.95
Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytol (2014) 0.95
A data-driven integrative model of sepal primordium polarity in Arabidopsis. Plant Cell (2011) 0.94
MicroFilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule organization during gravitropism. Plant J (2013) 0.94
Functional analysis of folate polyglutamylation and its essential role in plant metabolism and development. Plant J (2010) 0.94
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture. BMC Syst Biol (2011) 0.93
The binding of auxin to the Arabidopsis auxin influx transporter AUX1. Plant Physiol (2008) 0.92
Smooth 3-D reconstruction for 2-D histological images. Inf Process Med Imaging (2009) 0.92
Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses. Appl Environ Microbiol (2006) 0.91
How young trees cope with removal of whole or parts of shoots: an analysis of local and distant responses to pruning in 1-year-old apple (Malus xdomestica; Rosaceae) trees. Am J Bot (2011) 0.91