Published in Microsc Res Tech on October 01, 2010
BoneJ: Free and extensible bone image analysis in ImageJ. Bone (2010) 3.91
A computational tool for quantitative analysis of vascular networks. PLoS One (2011) 1.79
Differential Growth in Periclinal and Anticlinal Walls during Lobe Formation in Arabidopsis Cotyledon Pavement Cells. Plant Cell (2015) 1.23
Regulation of cancer aggressive features in melanoma cells by microRNAs. PLoS One (2011) 1.07
DiameterJ: A validated open source nanofiber diameter measurement tool. Biomaterials (2015) 1.06
Deformable registration of the inflated and deflated lung in cone-beam CT-guided thoracic surgery: initial investigation of a combined model- and image-driven approach. Med Phys (2013) 1.02
WormScan: a technique for high-throughput phenotypic analysis of Caenorhabditis elegans. PLoS One (2012) 1.01
Myosin-X functions in polarized epithelial cells. Mol Biol Cell (2012) 0.93
Functional genomic analyses of two morphologically distinct classes of Drosophila sensory neurons: post-mitotic roles of transcription factors in dendritic patterning. PLoS One (2013) 0.93
Motor-driven marginal band coiling promotes cell shape change during platelet activation. J Cell Biol (2014) 0.92
Inhibition of insulin/IGF-1 receptor signaling protects from mitochondria-mediated kidney failure. EMBO Mol Med (2015) 0.89
A 3D interconnected microchannel network formed in gelatin by sacrificial shellac microfibers. Adv Mater (2012) 0.89
Control of perfusable microvascular network morphology using a multiculture microfluidic system. Tissue Eng Part C Methods (2013) 0.89
Nicotinamide inhibits vasculogenic mimicry, an alternative vascularization pathway observed in highly aggressive melanoma. PLoS One (2013) 0.87
A Method for 3D Histopathology Reconstruction Supporting Mouse Microvasculature Analysis. PLoS One (2015) 0.87
Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy. RNA (2015) 0.85
Dendrite architecture organized by transcriptional control of the F-actin nucleator Spire. Development (2014) 0.85
Geometric characterization and simulation of planar layered elastomeric fibrous biomaterials. Acta Biomater (2014) 0.84
Quantification of tumor vessels in glioblastoma patients using time-of-flight angiography at 7 Tesla: a feasibility study. PLoS One (2014) 0.84
Topological Analysis for Arteriovenous Malformations via Computed Tomography Angiography: Part 2: Practical Application. Plast Reconstr Surg Glob Open (2014) 0.83
Registration of whole immunohistochemical slide images: an efficient way to characterize biomarker colocalization. J Am Med Inform Assoc (2014) 0.83
Fast super-resolution imaging with ultra-high labeling density achieved by joint tagging super-resolution optical fluctuation imaging. Sci Rep (2015) 0.82
Myosin activity drives actomyosin bundle formation and organization in contractile cells of the C. elegans spermatheca. Mol Biol Cell (2017) 0.81
Effect of dexamethasone administered with magnesium sulfate on inflammation-mediated degradation of the blood-brain barrier using an in vitro model. Reprod Sci (2013) 0.81
Lens-free computational imaging of capillary morphogenesis within three-dimensional substrates. J Biomed Opt (2012) 0.81
Fluid shear triggers microvilli formation via mechanosensitive activation of TRPV6. Nat Commun (2015) 0.81
A Central Role for Sympathetic Nerves in Herpes Stromal Keratitis in Mice. Invest Ophthalmol Vis Sci (2016) 0.80
Impaired myelination and reduced brain ferric iron in the mouse model of mucolipidosis IV. Dis Model Mech (2015) 0.79
Reconstruction of 3-dimensional histology volume and its application to study mouse mammary glands. J Vis Exp (2014) 0.79
Scanning laser optical tomography for in toto imaging of the murine cochlea. PLoS One (2017) 0.78
Combining Foxc2 and Connexin37 deletions in mice leads to severe defects in lymphatic vascular growth and remodeling. Dev Biol (2015) 0.78
Analysis of tubular membrane networks in cardiac myocytes from atria and ventricles. J Vis Exp (2014) 0.78
Sertoli Cells Modulate Testicular Vascular Network Development, Structure, and Function to Influence Circulating Testosterone Concentrations in Adult Male Mice. Endocrinology (2016) 0.78
Comparison of mandibular bone microarchitecture between micro-CT and CBCT images. Dentomaxillofac Radiol (2015) 0.78
Evaluation of TgH(CX3CR1-EGFP) mice implanted with mCherry-GL261 cells as an in vivo model for morphometrical analysis of glioma-microglia interaction. BMC Cancer (2016) 0.78
FiloQuant reveals increased filopodia density during breast cancer progression. J Cell Biol (2017) 0.77
Effect of exposure parameters and voxel size on bone structure analysis in CBCT. Dentomaxillofac Radiol (2015) 0.77
Genetic variation in retinal vascular patterning predicts variation in pial collateral extent and stroke severity. Angiogenesis (2014) 0.77
Application of Sholl analysis to quantify changes in growth and development in rat mammary gland whole mounts. Reprod Toxicol (2014) 0.77
Phenotypic clustering: a novel method for microglial morphology analysis. J Neuroinflammation (2016) 0.77
Vascular pathology of 20-month-old hypercholesterolemia mice in comparison to triple-transgenic and APPSwDI Alzheimer's disease mouse models. Mol Cell Neurosci (2014) 0.77
The Ellipsoid Factor for Quantification of Rods, Plates, and Intermediate Forms in 3D Geometries. Front Endocrinol (Lausanne) (2015) 0.76
Glial metabotropic glutamate receptor-4 increases maturation and survival of oligodendrocytes. Front Cell Neurosci (2015) 0.76
Sex differences in astrocyte and microglia responses immediately following middle cerebral artery occlusion in adult mice. Neuroscience (2016) 0.76
Transformation diffusion reconstruction of three-dimensional histology volumes from two-dimensional image stacks. Med Image Anal (2017) 0.75
Hemodynamic Influence on Smooth Muscle Cell Kinetics and Phenotype During Early Vein Graft Adaptation. Ann Biomed Eng (2016) 0.75
Kinetic analyses of vasculogenesis inform mechanistic studies. Am J Physiol Cell Physiol (2017) 0.75
Computer-aided three-dimensional reconstruction of main vessels in hemangiomas. Int J Clin Exp Med (2015) 0.75
An Automated Image Analysis System to Quantify Endosomal Tubulation. PLoS One (2016) 0.75
Induction of hippocampal long-term potentiation increases the morphological dynamics of microglial processes and prolongs their contacts with dendritic spines. Sci Rep (2016) 0.75
Optimization of the dorsal skinfold window chamber model and multi-parametric characterization of tumor-associated vasculature. Intravital (2014) 0.75
LobeFinder: A Convex Hull-Based Method for Quantitative Boundary Analyses of Lobed Plant Cells. Plant Physiol (2016) 0.75
Stathmin-like 4 is critical for the maintenance of neural progenitor cells in dorsal midbrain of zebrafish larvae. Sci Rep (2016) 0.75
MicroCT angiography detects vascular formation and regression in skin wound healing. Microvasc Res (2016) 0.75
Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. Neuroinformatics (2016) 0.75
Exploiting Self-organization in Bioengineered Systems: A Computational Approach. Front Bioeng Biotechnol (2017) 0.75
Quantitative microglia analyses reveal diverse morphologic responses in the rat cortex after diffuse brain injury. Sci Rep (2017) 0.75
Crumpling-based soft metamaterials: the effects of sheet pore size and porosity. Sci Rep (2017) 0.75
Decoupling the effects of stiffness and fiber density on cellular behaviors via an interpenetrating network of gelatin-methacrylate and collagen. Biomaterials (2017) 0.75
DYNAMIC REGISTRATION FOR GIGAPIXEL SERIAL WHOLE SLIDE IMAGES. Proc IEEE Int Symp Biomed Imaging (2017) 0.75
Functionally and morphologically damaged mitochondria observed in auditory cells under senescence-inducing stress. NPJ Aging Mech Dis (2017) 0.75
New strategies for echocardiographic evaluation of left ventricular function in a mouse model of long-term myocardial infarction. PLoS One (2012) 1.00
Adiposoft: automated software for the analysis of white adipose tissue cellularity in histological sections. J Lipid Res (2012) 0.98
Segmentation and shape tracking of whole fluorescent cells based on the Chan-Vese model. IEEE Trans Med Imaging (2013) 0.92
Quantitative in vivo microscopy: the return from the 'omics'. Curr Opin Biotechnol (2006) 0.90
Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. Med Image Anal (2013) 0.89
System for combined three-dimensional morphological and molecular analysis of thick tissue specimens. Microsc Res Tech (2002) 0.89
Longitudinal study of a mouse model of chronic pulmonary inflammation using breath hold gated micro-CT. Eur Radiol (2010) 0.88
Robust, standardized quantification of pulmonary emphysema in low dose CT exams. Acad Radiol (2011) 0.83
Smokers with CT detected emphysema and no airway obstruction have decreased plasma levels of EGF, IL-15, IL-8 and IL-1ra. PLoS One (2013) 0.80
Efficient blind spectral unmixing of fluorescently labeled samples using multi-layer non-negative matrix factorization. PLoS One (2013) 0.80
Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray. BMC Bioinformatics (2012) 0.78
Multiscale in situ analysis of the role of dyskerin in lung cancer cells. Integr Biol (Camb) (2013) 0.77
MODELING AIRWAY PROBABILITY. Proc IEEE Int Symp Biomed Imaging (2013) 0.75