Published in Nucleic Acids Res on March 31, 2010
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res (2012) 1.39
Candida glabrata Pwp7p and Aed1p are required for adherence to human endothelial cells. FEMS Yeast Res (2011) 0.84
Biogeographical characterization of Saccharomyces cerevisiae wine yeast by molecular methods. Front Microbiol (2013) 0.82
Genome structure and dynamics of the yeast pathogen Candida glabrata. FEMS Yeast Res (2014) 0.80
Gross karyotypic and phenotypic alterations among different progenies of the Candida glabrata CBS138/ATCC2001 reference strain. PLoS One (2012) 0.80
Detection and characterization of megasatellites in orthologous and nonorthologous genes of 21 fungal genomes. Eukaryot Cell (2013) 0.79
Genome-wide replication landscape of Candida glabrata. BMC Biol (2015) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol (1980) 113.75
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol (1985) 47.78
PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci (1997) 45.07
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res (2003) 38.75
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol (1993) 38.03
Integration of biological networks and gene expression data using Cytoscape. Nat Protoc (2007) 27.10
Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev (1999) 19.25
Selection in the evolution of gene duplications. Genome Biol (2002) 5.58
Intragenic tandem repeats generate functional variability. Nat Genet (2005) 4.02
Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol Mol Biol Rev (2008) 3.35
Expansions and contractions in a tandem repeat induced by double-strand break repair. Mol Cell Biol (1998) 2.79
The chromosome end in yeast: its mosaic nature and influence on recombinational dynamics. Genetics (1994) 2.70
Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol (2004) 1.96
Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol Biol (2004) 1.95
Efficient homologous and illegitimate recombination in the opportunistic yeast pathogen Candida glabrata. Genetics (1999) 1.69
Telomere length control and transcriptional regulation of subtelomeric adhesins in Candida glabrata. Mol Microbiol (2005) 1.56
Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres. Proc Natl Acad Sci U S A (2010) 1.50
Comparative genomics of hemiascomycete yeasts: genes involved in DNA replication, repair, and recombination. Mol Biol Evol (2005) 1.31
Structure of Kluyveromyces lactis subtelomeres: duplications and gene content. FEMS Yeast Res (2006) 1.17
Molecular evolution of minisatellites in hemiascomycetous yeasts. Mol Biol Evol (2005) 1.04
Minisatellite origins in yeast and humans. Genomics (1998) 0.96
Megasatellites: a peculiar class of giant minisatellites in genes involved in cell adhesion and pathogenicity in Candida glabrata. Nucleic Acids Res (2008) 0.94
Expansions and contractions in 36-bp minisatellites by gene conversion in yeast. Genetics (2001) 0.94
Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata. Cell Mol Life Sci (2009) 0.89
Patterns of polymorphism and divergence in stress-related yeast proteins. Yeast (2005) 0.88
Genome evolution in yeasts. Nature (2004) 10.50
Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol Mol Biol Rev (2008) 3.35
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. PLoS Genet (2008) 2.54
Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. EMBO J (2003) 2.21
Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns. Nucleic Acids Res (2003) 2.21
Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis. Gene (2002) 2.09
Comparative genomics of protoploid Saccharomycetaceae. Genome Res (2009) 1.96
Continued colonization of the human genome by mitochondrial DNA. PLoS Biol (2004) 1.93
Comparative genomics in hemiascomycete yeasts: evolution of sex, silencing, and subtelomeres. Mol Biol Evol (2004) 1.92
Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region. J Cell Biol (2006) 1.81
Genetic network interactions among replication, repair and nuclear pore deficiencies in yeast. DNA Repair (Amst) (2005) 1.65
Telomere length control and transcriptional regulation of subtelomeric adhesins in Candida glabrata. Mol Microbiol (2005) 1.56
A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization. BMC Genomics (2003) 1.51
Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres. Proc Natl Acad Sci U S A (2010) 1.50
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet (2006) 1.40
Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae. Genome Biol (2004) 1.33
SRS2 and SGS1 prevent chromosomal breaks and stabilize triplet repeats by restraining recombination. Nat Struct Mol Biol (2009) 1.32
Comparative genomics of hemiascomycete yeasts: genes involved in DNA replication, repair, and recombination. Mol Biol Evol (2005) 1.31
Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae. Funct Integr Genomics (2002) 1.28
The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res (2006) 1.28
Distance from the chromosome end determines the efficiency of double strand break repair in subtelomeres of haploid yeast. J Mol Biol (2003) 1.22
Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples. Eukaryot Cell (2009) 1.20
Functional analysis of yeast gene families involved in metabolism of vitamins B1 and B6. Yeast (2002) 1.19
Structure of Kluyveromyces lactis subtelomeres: duplications and gene content. FEMS Yeast Res (2006) 1.17
The asexual yeast Candida glabrata maintains distinct a and alpha haploid mating types. Eukaryot Cell (2008) 1.16
Genome-wide analysis of heteroduplex DNA in mismatch repair-deficient yeast cells reveals novel properties of meiotic recombination pathways. PLoS Genet (2011) 1.16
Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization. G3 (Bethesda) (2012) 1.12
Stability of large segmental duplications in the yeast genome. Genetics (2006) 1.11
Evolutionary role of interspecies hybridization and genetic exchanges in yeasts. Microbiol Mol Biol Rev (2012) 1.11
The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata. FEBS Lett (2003) 1.06
Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes. PLoS One (2009) 1.04
Molecular evolution of minisatellites in hemiascomycetous yeasts. Mol Biol Evol (2005) 1.04
Gene relics in the genome of the yeast Saccharomyces cerevisiae. Gene (2004) 1.00
Genome-wide nuclear morphology screen identifies novel genes involved in nuclear architecture and gene-silencing in Saccharomyces cerevisiae. J Mol Biol (2002) 0.99
Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts. FEMS Yeast Res (2008) 0.98
Genomic polymorphism in the population of Candida glabrata: gene copy-number variation and chromosomal translocations. Fungal Genet Biol (2008) 0.98
Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res (2009) 0.96
Megasatellites: a peculiar class of giant minisatellites in genes involved in cell adhesion and pathogenicity in Candida glabrata. Nucleic Acids Res (2008) 0.94
Comparative genomics of emerging pathogens in the Candida glabrata clade. BMC Genomics (2013) 0.92
The spirochetal chpK-chromosomal toxin-antitoxin locus induces growth inhibition of yeast and mycobacteria. FEMS Microbiol Lett (2003) 0.92
The complete mitochondrial genome of the yeast Kluyveromyces thermotolerans. FEBS Lett (2005) 0.91
Contractions and expansions of CAG/CTG trinucleotide repeats occur during ectopic gene conversion in yeast, by a MUS81-independent mechanism. J Mol Biol (2003) 0.90
Saccharomyces cerevisiae donor preference during mating-type switching is dependent on chromosome architecture and organization. Genetics (2006) 0.89
Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata. Cell Mol Life Sci (2009) 0.89
Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palindromic GC clusters and considerable size expansion. FEMS Yeast Res (2009) 0.89
Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis. BMC Genomics (2010) 0.87
Transcription and nuclear transport of CAG/CTG trinucleotide repeats in yeast. Nucleic Acids Res (2002) 0.86
Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina). Genome Biol Evol (2013) 0.85
Analysis of microsatellites in 13 hemiascomycetous yeast species: mechanisms involved in genome dynamics. J Mol Evol (2003) 0.83
Characterization of the I-Spom I endonuclease from fission yeast: insights into the evolution of a group I intron-encoded homing endonuclease. J Mol Evol (2002) 0.80
Yeasty clocks: dating genomic changes in yeasts. C R Biol (2011) 0.80
Detection and characterization of megasatellites in orthologous and nonorthologous genes of 21 fungal genomes. Eukaryot Cell (2013) 0.79
Population polymorphism of nuclear mitochondrial DNA insertions reveals widespread diploidy associated with loss of heterozygosity in Debaryomyces hansenii. Eukaryot Cell (2010) 0.79
Novel transporters from hemiascomycete yeasts. J Mol Microbiol Biotechnol (2003) 0.79
Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure. Yeast (2014) 0.79
Cooperative evolution in protein complexes of yeast from comparative analyses of its interaction network. Proteomics (2005) 0.77
In memoriam Piotr Slonimski (1922-2009) the unconventional yeast geneticist. Genetics (2009) 0.75