Published in Annu Rev Biochem on January 01, 2010
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Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat Commun (2013) 1.02
Parts plus pipes: synthetic biology approaches to metabolic engineering. Metab Eng (2011) 0.97
Rational optimization of tolC as a powerful dual selectable marker for genome engineering. Nucleic Acids Res (2014) 0.92
Assessing directed evolution methods for the generation of biosynthetic enzymes with potential in drug biosynthesis. Future Med Chem (2011) 0.90
Bridging the gap: a roadmap to breaking the biological design barrier. Front Bioeng Biotechnol (2015) 0.89
A culture-independent approach to unravel uncultured bacteria and functional genes in a complex microbial community. PLoS One (2012) 0.87
Engineering an allosteric transcription factor to respond to new ligands. Nat Methods (2015) 0.87
Synthetic biosensors for precise gene control and real-time monitoring of metabolites. Nucleic Acids Res (2015) 0.86
A general strategy to construct small molecule biosensors in eukaryotes. Elife (2015) 0.86
Engineering an Acinetobacter regulon for biosensing and high-throughput enzyme screening in E. coli via flow cytometry. Nucleic Acids Res (2014) 0.85
A Sense of Balance: Experimental Investigation and Modeling of a Malonyl-CoA Sensor in Escherichia coli. Front Bioeng Biotechnol (2015) 0.85
Genetic sensor for strong methylating compounds. ACS Synth Biol (2013) 0.84
Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains. PLoS One (2014) 0.83
Genetically encoded sensors enable real-time observation of metabolite production. Proc Natl Acad Sci U S A (2016) 0.82
Economical analysis of saturation mutagenesis experiments. Sci Rep (2015) 0.82
Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry. Microb Biotechnol (2012) 0.82
Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels. Sci Rep (2014) 0.82
Transcription factor-based biosensors in biotechnology: current state and future prospects. Appl Microbiol Biotechnol (2015) 0.79
Directed Chemical Evolution with an Outsized Genetic Code. PLoS One (2016) 0.79
NADH-dependent biosensor in Saccharomyces cerevisiae: principle and validation at the single cell level. AMB Express (2014) 0.79
Harnessing natural product assembly lines: structure, promiscuity, and engineering. J Ind Microbiol Biotechnol (2015) 0.78
Protein engineering for metabolic engineering: current and next-generation tools. Biotechnol J (2013) 0.78
Biochemical detection of N-Acyl homoserine lactone from biofilm-forming uropathogenic Escherichia coli isolated from urinary tract infection samples. Rep Biochem Mol Biol (2015) 0.77
Precision metabolic engineering: The design of responsive, selective, and controllable metabolic systems. Metab Eng (2015) 0.77
Rapid prototyping of microbial cell factories via genome-scale engineering. Biotechnol Adv (2014) 0.76
Scalable plasmid transfer using engineered P1-based phagemids. ACS Synth Biol (2012) 0.76
Analytics for Metabolic Engineering. Front Bioeng Biotechnol (2015) 0.76
Review of micro/nanotechnologies for microbial biosensors. Front Bioeng Biotechnol (2015) 0.76
Development of a Recombinant Escherichia coli Strain for Overproduction of the Plant Pigment Anthocyanin. Appl Environ Microbiol (2015) 0.76
Design and application of a lactulose biosensor. Sci Rep (2017) 0.75
Analysis of amino acid substitutions in AraC variants that respond to triacetic acid lactone. Protein Sci (2016) 0.75
A Review on Microfluidic Paper-Based Analytical Devices for Glucose Detection. Sensors (Basel) (2016) 0.75
Profiling of microbial colonies for high-throughput engineering of multi-step enzymatic reactions via optically guided MALDI MS. J Am Chem Soc (2017) 0.75
Compartmentalized partnered replication for the directed evolution of genetic parts and circuits. Nat Protoc (2017) 0.75
Tailor-made transcriptional biosensors for optimizing microbial cell factories. J Ind Microbiol Biotechnol (2016) 0.75
Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature (2006) 13.86
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat Biotechnol (2003) 6.74
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature (2010) 5.84
Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol (2009) 4.11
Microbial engineering for the production of advanced biofuels. Nature (2012) 3.60
Designed divergent evolution of enzyme function. Nature (2006) 3.09
Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat Biotechnol (2006) 3.02
Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Curr Opin Biotechnol (2008) 2.80
Precise and reliable gene expression via standard transcription and translation initiation elements. Nat Methods (2013) 2.61
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat Biotechnol (2012) 2.55
Production of isoprenoid pharmaceuticals by engineered microbes. Nat Chem Biol (2006) 2.35
Model-driven engineering of RNA devices to quantitatively program gene expression. Science (2011) 2.33
BglBricks: A flexible standard for biological part assembly. J Biol Eng (2010) 2.32
Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab Eng (2006) 2.31
Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol. Microb Cell Fact (2008) 2.26
Biofuel alternatives to ethanol: pumping the microbial well. Trends Biotechnol (2008) 2.18
Microbially derived artemisinin: a biotechnology solution to the global problem of access to affordable antimalarial drugs. Am J Trop Med Hyg (2007) 2.15
Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin. Proc Natl Acad Sci U S A (2012) 2.06
Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods (2013) 2.03
Biosynthesis of plant isoprenoids: perspectives for microbial engineering. Annu Rev Plant Biol (2009) 1.98
Engineering microbial biofuel tolerance and export using efflux pumps. Mol Syst Biol (2011) 1.96
Advanced biofuel production in microbes. Biotechnol J (2010) 1.94
Functional cloning of TUG as a regulator of GLUT4 glucose transporter trafficking. Nature (2003) 1.88
Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes. Cell (2012) 1.87
Genes involved in long-chain alkene biosynthesis in Micrococcus luteus. Appl Environ Microbiol (2009) 1.87
High-level production of amorpha-4,11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli. PLoS One (2009) 1.83
Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene. Metab Eng (2008) 1.81
Engineering Escherichia coli for production of functionalized terpenoids using plant P450s. Nat Chem Biol (2007) 1.79
j5 DNA assembly design automation software. ACS Synth Biol (2011) 1.78
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proc Natl Acad Sci U S A (2011) 1.75
Functional genomic study of exogenous n-butanol stress in Escherichia coli. Appl Environ Microbiol (2010) 1.69
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol (2006) 1.68
Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid. BMC Biotechnol (2008) 1.68
Metabolic engineering for drug discovery and development. Nat Rev Drug Discov (2003) 1.67
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure (2011) 1.67
Identification and microbial production of a terpene-based advanced biofuel. Nat Commun (2011) 1.65
Metabolic engineering of microbial pathways for advanced biofuels production. Curr Opin Biotechnol (2011) 1.64
Metabolic engineering delivers next-generation biofuels. Nat Biotechnol (2008) 1.60
High-level production of amorpha-4,11-diene in a two-phase partitioning bioreactor of metabolically engineered Escherichia coli. Biotechnol Bioeng (2006) 1.53
Engineering static and dynamic control of synthetic pathways. Cell (2010) 1.52
Design and construction of a double inversion recombination switch for heritable sequential genetic memory. PLoS One (2008) 1.49
Identification of isopentenol biosynthetic genes from Bacillus subtilis by a screening method based on isoprenoid precursor toxicity. Appl Environ Microbiol (2007) 1.40
Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry. J Bacteriol (2006) 1.40
Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools. Nucleic Acids Res (2012) 1.39
Application of functional genomics to pathway optimization for increased isoprenoid production. Appl Environ Microbiol (2008) 1.38
Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids. Metab Eng (2006) 1.36
A tightly regulated inducible expression system utilizing the fim inversion recombination switch. Biotechnol Bioeng (2006) 1.35
Mono and diterpene production in Escherichia coli. Biotechnol Bioeng (2004) 1.35
Chemical synthesis using synthetic biology. Curr Opin Biotechnol (2009) 1.34
Membrane proteomics of phagosomes suggests a connection to autophagy. Proc Natl Acad Sci U S A (2008) 1.34
Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production. Metab Eng (2013) 1.31
Metabolic flux elucidation for large-scale models using 13C labeled isotopes. Metab Eng (2007) 1.31
Modular engineering of L-tyrosine production in Escherichia coli. Appl Environ Microbiol (2011) 1.31
Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling. Mass Spectrom Rev (2009) 1.31
A propionate-inducible expression system for enteric bacteria. Appl Environ Microbiol (2005) 1.30
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metab Eng (2012) 1.30
Targeted proteomics for metabolic pathway optimization: application to terpene production. Metab Eng (2011) 1.29
Engineering dynamic pathway regulation using stress-response promoters. Nat Biotechnol (2013) 1.27
Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters. Appl Environ Microbiol (2007) 1.26
Developing Aspergillus as a host for heterologous expression. Biotechnol Adv (2008) 1.26
Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Biotechnol Bioeng (2005) 1.23
Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. J Bacteriol (2009) 1.22
Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl Environ Microbiol (2006) 1.22
Lutein accumulation in the absence of zeaxanthin restores nonphotochemical quenching in the Arabidopsis thaliana npq1 mutant. Plant Cell (2009) 1.20
Synthesis: A constructive debate. Nature (2012) 1.19
Catabolite repression of the propionate catabolic genes in Escherichia coli and Salmonella enterica: evidence for involvement of the cyclic AMP receptor protein. J Bacteriol (2005) 1.19
Process design for microbial plastic factories: metabolic engineering of polyhydroxyalkanoates. Curr Opin Biotechnol (2003) 1.18
Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling. J Bacteriol (2006) 1.17
Engineering of bacterial methyl ketone synthesis for biofuels. Appl Environ Microbiol (2011) 1.16
Importance of systems biology in engineering microbes for biofuel production. Curr Opin Biotechnol (2008) 1.16
Biosynthesis and engineering of isoprenoid small molecules. Appl Microbiol Biotechnol (2006) 1.15
Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth Biol (2012) 1.15
Combinatorial expression of bacterial whole mevalonate pathway for the production of beta-carotene in E. coli. J Biotechnol (2009) 1.15
Redirection of flux through the FPP branch-point in Saccharomyces cerevisiae by down-regulating squalene synthase. Biotechnol Bioeng (2008) 1.15
Enhanced lycopene production in Escherichia coli engineered to synthesize isopentenyl diphosphate and dimethylallyl diphosphate from mevalonate. Biotechnol Bioeng (2006) 1.14
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2007) 1.14
Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal. Appl Environ Microbiol (2002) 1.13
Engineering cotton (+)-delta-cadinene synthase to an altered function: germacrene D-4-ol synthase. Chem Biol (2006) 1.12
Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. Plant Physiol (2012) 1.10
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Appl Environ Microbiol (2009) 1.10
A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3). ACS Chem Biol (2009) 1.10
XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A (2012) 1.09
Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics. Brief Funct Genomic Proteomic (2006) 1.09
Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid. Appl Environ Microbiol (2007) 1.09
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. PLoS One (2012) 1.09
Engineering triterpene production in Saccharomyces cerevisiae-beta-amyrin synthase from Artemisia annua. FEBS J (2008) 1.07
Metabolic engineering of microorganisms for isoprenoid production. Nat Prod Rep (2008) 1.07
Synergies between synthetic biology and metabolic engineering. Nat Biotechnol (2011) 1.06
Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification. Plant Physiol (2013) 1.06
Optimization of DsRed production in Escherichia coli: effect of ribosome binding site sequestration on translation efficiency. Biotechnol Bioeng (2005) 1.05
Polyphosphate kinase genes from full-scale activated sludge plants. Appl Microbiol Biotechnol (2007) 1.04
Effect of lacY expression on homogeneity of induction from the P(tac) and P(trc) promoters by natural and synthetic inducers. Biotechnol Prog (2002) 1.04
A model for improving microbial biofuel production using a synthetic feedback loop. Syst Synth Biol (2010) 1.04
Global analysis of host response to induction of a latent bacteriophage. BMC Microbiol (2007) 1.03
Analysis of amino acid isotopomers using FT-ICR MS. Anal Chem (2007) 1.03
HipA-triggered growth arrest and β-lactam tolerance in Escherichia coli are mediated by RelA-dependent ppGpp synthesis. J Bacteriol (2013) 1.03
Microbial sensors for small molecules: development of a mevalonate biosensor. Metab Eng (2006) 1.02
Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain. Biotechnol Bioeng (2009) 1.00
Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant Biotechnol J (2012) 1.00
Charge-associated effects of fullerene derivatives on microbial structural integrity and central metabolism. Nano Lett (2007) 1.00